Cow genome map

Conread name: Pig3-SRG8027B03

Conread position: 1-452
Cow position: chr17:1882145-1881690 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 137

Conread position: 2-296
Cow position: chr17:1388175-1388467 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 196
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 44, 122

Conread position: 2-441
Cow position: chr17:4345713-4346144 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 130

Conread position: 4-347
Cow position: chr17:8210518-8210173 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 209

Conread position: 4-369
Cow position: chr17:34574620-34574254 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 209

Conread position: 4-398
Cow position: chr17:14215162-14215563 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 278

Conread position: 4-399
Cow position: chr17:45271242-45271641 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 209

Conread position: 4-417
Cow position: chr17:19266967-19267386 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 271

Conread position: 4-417
Cow position: chr17:34159605-34159187 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 272

Conread position: 4-447
Cow position: chr17:19980262-19980706 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 209

Conread position: 4-459
Cow position: chr17:14294679-14295139 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 309
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 46, 71

Conread position: 4-469
Cow position: chr17:2554398-2554865 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 65

Conread position: 4-484
Cow position: chr17:15327154-15326674 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 131

Conread position: 4-485
Cow position: chr17:4083880-4083413 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 332
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 47, 20

Conread position: 4-485
Cow position: chr17:6070406-6069937 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 209

Conread position: 4-485
Cow position: chr17:15437661-15437178 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 209

Conread position: 4-485
Cow position: chr17:20490185-20489707 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 121

Conread position: 4-485
Cow position: chr17:28026630-28027110 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 270

Conread position: 4-485
Cow position: chr17:40806683-40806201 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 136

Conread position: 4-490
Cow position: chr17:40317-39830 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 209

Conread position: 4-490
Cow position: chr17:11784744-11784248 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 209

Conread position: 4-490
Cow position: chr17:14936096-14936581 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 210

Conread position: 4-490
Cow position: chr17:23322571-23323058 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 209

Conread position: 4-490
Cow position: chr17:24784038-24783552 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 123

Conread position: 4-498
Cow position: chr17:6121663-6121167 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 209

Conread position: 4-500
Cow position: chr17:20085904-20086399 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 33

Conread position: 4-500
Cow position: chr17:20098612-20099102 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 115

Conread position: 4-502
Cow position: chr17:136503-136002 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 126

Conread position: 4-502
Cow position: chr17:183448-182945 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 209

Conread position: 4-502
Cow position: chr17:2246212-2246714 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 125

Conread position: 4-502
Cow position: chr17:6261725-6261233 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 78

Conread position: 4-502
Cow position: chr17:27792909-27793409 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 8

Conread position: 4-502
Cow position: chr17:43990371-43989874 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 50

Conread position: 6-310
Cow position: chr17:240139-239833 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 219
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 44, 6

Conread position: 6-490
Cow position: chr17:2170293-2169810 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 6

Conread position: 6-490
Cow position: chr17:4782939-4783432 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 6

Conread position: 11-324
Cow position: chr17:13690529-13690860 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 236
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 40, 209

Conread position: 12-417
Cow position: chr17:22561764-22561357 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 170

Conread position: 12-489
Cow position: chr17:20404274-20403810 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 68

Conread position: 12-490
Cow position: chr17:15141481-15141965 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 313

Conread position: 12-490
Cow position: chr17:29302634-29302146 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 197

Conread position: 12-497
Cow position: chr17:5999636-6000117 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 72

Conread position: 12-502
Cow position: chr17:3706958-3707417 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 330
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 20, 27

Conread position: 14-480
Cow position: chr17:15373060-15372611 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 33

Conread position: 15-505
Cow position: chr17:9751569-9751073 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 121

Conread position: 19-490
Cow position: chr17:39050079-39049605 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 194

Conread position: 23-372
Cow position: chr17:8069752-8070101 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 249
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 10, 48

Conread position: 24-468
Cow position: chr17:22236402-22235950 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 295
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 23, 67

Conread position: 26-416
Cow position: chr17:17068177-17067793 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 275
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 24, 87

Conread position: 26-440
Cow position: chr17:19367128-19366694 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 103

Conread position: 29-323
Cow position: chr17:6077950-6077664 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 208
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 212, 113

Conread position: 32-328
Cow position: chr17:4169005-4168709 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 204
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 15, 68

Conread position: 32-400
Cow position: chr17:31534954-31534578 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 262
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 21, 62

Conread position: 66-490
Cow position: chr17:17256876-17257300 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 138

Conread position: 69-368
Cow position: chr17:33283879-33284180 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 216
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 61, 137

Conread position: 90-491
Cow position: chr17:2150167-2149790 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 261
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 41, 0

Conread position: 100-403
Cow position: chr17:44925566-44925867 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 212
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 52, 103

Conread position: 102-309
Cow position: chr17:3283571-3283375 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 151
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 82, 111

Conread position: 114-463
Cow position: chr17:6627055-6626720 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 227
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 150, 14

Conread position: 114-490
Cow position: chr17:2263905-2263529 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 159

Conread position: 114-490
Cow position: chr17:13967692-13967317 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 159

Conread position: 116-325
Cow position: chr17:1705128-1704921 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 154
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 114, 18

Conread position: 118-375
Cow position: chr17:2175683-2175423 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 197
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 33, 85

Conread position: 119-444
Cow position: chr17:20414699-20415028 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 93

Conread position: 119-490
Cow position: chr17:34157881-34157512 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 71

Conread position: 124-505
Cow position: chr17:3640149-3640534 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 149

Conread position: 130-505
Cow position: chr17:11085977-11086356 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 74

Conread position: 133-310
Cow position: chr17:18589961-18589781 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 138
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 107, 67

Conread position: 185-490
Cow position: chr17:5228317-5228013 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 206
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 40, 17

Conread position: 239-490
Cow position: chr17:9079783-9080030 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 181
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 26, 31

Conread position: 247-485
Cow position: chr17:3654659-3654895 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 172
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 18, 23

Conread position: 247-501
Cow position: chr17:42267286-42267035 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 175
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 17, 23

Show alignments to all cow chromosomes.