Cow genome map
| Conread name: | Pig3-SRG8027B03 |
| Conread position: | 1-449 |
| Cow position: | chr21:17224525-17224983 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 280 |
| Conread position: | 2-485 |
| Cow position: | chr21:25125760-25125290 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 321 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 13, 36 |
| Conread position: | 2-501 |
| Cow position: | chr21:4712829-4712361 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 343 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 10, 44 |
| Conread position: | 2-502 |
| Cow position: | chr21:2538906-2539421 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 210 |
| Conread position: | 3-484 |
| Cow position: | chr21:36978741-36979230 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 55 |
| Conread position: | 4-312 |
| Cow position: | chr21:8836150-8835851 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 218 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 43, 123 |
| Conread position: | 4-327 |
| Cow position: | chr21:28614481-28614151 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 191 |
| Conread position: | 4-349 |
| Cow position: | chr21:32832061-32832408 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 56 |
| Conread position: | 4-353 |
| Cow position: | chr21:4096841-4096490 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 209 |
| Conread position: | 4-374 |
| Cow position: | chr21:45783596-45783224 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 78 |
| Conread position: | 4-414 |
| Cow position: | chr21:37150144-37149729 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 178 |
| Conread position: | 4-432 |
| Cow position: | chr21:38805239-38805668 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 288 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 27, 127 |
| Conread position: | 4-438 |
| Cow position: | chr21:31251154-31250717 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 78 |
| Conread position: | 4-441 |
| Cow position: | chr21:42915967-42915528 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 209 |
| Conread position: | 4-471 |
| Cow position: | chr21:31640069-31639607 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 66 |
| Conread position: | 4-476 |
| Cow position: | chr21:29003361-29003844 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 138 |
| Conread position: | 4-485 |
| Cow position: | chr21:31183-30719 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 111 |
| Conread position: | 4-485 |
| Cow position: | chr21:148083-147602 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 294 |
| Conread position: | 4-485 |
| Cow position: | chr21:5019305-5018820 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 270 |
| Conread position: | 4-485 |
| Cow position: | chr21:10568854-10568379 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 116 |
| Conread position: | 4-485 |
| Cow position: | chr21:26837350-26836870 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 22 |
| Conread position: | 4-485 |
| Cow position: | chr21:30597305-30597790 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 272 |
| Conread position: | 4-485 |
| Cow position: | chr21:31514154-31514636 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 270 |
| Conread position: | 4-485 |
| Cow position: | chr21:34655987-34655508 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 123 |
| Conread position: | 4-485 |
| Cow position: | chr21:40269510-40269992 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 85 |
| Conread position: | 4-485 |
| Cow position: | chr21:44763791-44764272 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 270 |
| Conread position: | 4-485 |
| Cow position: | chr21:47647496-47647011 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 271 |
| Conread position: | 4-489 |
| Cow position: | chr21:37373389-37372902 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 199 |
| Conread position: | 4-490 |
| Cow position: | chr21:11507770-11507290 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 204 |
| Conread position: | 4-490 |
| Cow position: | chr21:19612919-19612436 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 67 |
| Conread position: | 4-490 |
| Cow position: | chr21:33711296-33710825 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 212 |
| Conread position: | 4-493 |
| Cow position: | chr21:3780935-3780444 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 41 |
| Conread position: | 4-493 |
| Cow position: | chr21:30563826-30563340 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 154 |
| Conread position: | 4-497 |
| Cow position: | chr21:33999912-34000425 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 27 |
| Conread position: | 4-502 |
| Cow position: | chr21:1286052-1286557 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 68 |
| Conread position: | 4-502 |
| Cow position: | chr21:2513012-2512508 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 138 |
| Conread position: | 4-502 |
| Cow position: | chr21:26634995-26635499 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 8 |
| Conread position: | 4-502 |
| Cow position: | chr21:28257581-28257084 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 123 |
| Conread position: | 5-432 |
| Cow position: | chr21:361825-361405 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 7 |
| Conread position: | 6-308 |
| Cow position: | chr21:45907539-45907837 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 40, 10 |
| Conread position: | 6-309 |
| Cow position: | chr21:4865704-4866004 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 212 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 225, 6 |
| Conread position: | 6-493 |
| Cow position: | chr21:38024263-38023803 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 113 |
| Conread position: | 11-414 |
| Cow position: | chr21:2418358-2417953 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 109 |
| Conread position: | 12-414 |
| Cow position: | chr21:7154488-7154084 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 117 |
| Conread position: | 12-483 |
| Cow position: | chr21:7591814-7591340 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 144 |
| Conread position: | 12-485 |
| Cow position: | chr21:13298733-13298273 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 134 |
| Conread position: | 12-485 |
| Cow position: | chr21:21702060-21701590 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 103 |
| Conread position: | 16-496 |
| Cow position: | chr21:39427215-39426739 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 183 |
| Conread position: | 23-485 |
| Cow position: | chr21:13185751-13185294 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 307 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 23, 7 |
| Conread position: | 26-280 |
| Cow position: | chr21:35404429-35404689 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 199 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 21, 80 |
| Conread position: | 26-490 |
| Cow position: | chr21:5011597-5012034 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 38 |
| Conread position: | 28-296 |
| Cow position: | chr21:11469883-11469606 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 18, 41 |
| Conread position: | 32-485 |
| Cow position: | chr21:4565589-4565141 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 80 |
| Conread position: | 37-479 |
| Cow position: | chr21:26566141-26566579 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 288 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 10, 86 |
| Conread position: | 52-435 |
| Cow position: | chr21:9864963-9865334 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 378, 63 |
| Conread position: | 66-468 |
| Cow position: | chr21:21139800-21139409 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 273 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 175, 30 |
| Conread position: | 100-476 |
| Cow position: | chr21:3170461-3170091 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 260 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 141, 100 |
| Conread position: | 101-497 |
| Cow position: | chr21:29257040-29257428 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 268 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 29, 85 |
| Conread position: | 103-476 |
| Cow position: | chr21:29633827-29633463 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 260 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 23, 42 |
| Conread position: | 115-480 |
| Cow position: | chr21:21917276-21916924 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 251 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 27, 91 |
| Conread position: | 119-296 |
| Cow position: | chr21:12537435-12537256 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 119-485 |
| Cow position: | chr21:22751399-22751763 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 258 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 121, 189 |
| Conread position: | 125-370 |
| Cow position: | chr21:41885503-41885751 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 24, 91 |
| Conread position: | 125-505 |
| Cow position: | chr21:1688132-1688514 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 118, 87 |
| Conread position: | 130-401 |
| Cow position: | chr21:49092381-49092662 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 95, 14 |
| Conread position: | 130-498 |
| Cow position: | chr21:9894003-9893641 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 251 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 59, 13 |
| Conread position: | 134-375 |
| Cow position: | chr21:1194468-1194224 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 96, 139 |
| Conread position: | 134-490 |
| Cow position: | chr21:6413992-6414348 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 78 |
| Conread position: | 135-424 |
| Cow position: | chr21:23652193-23651903 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 169, 199 |
| Conread position: | 137-310 |
| Cow position: | chr21:27567804-27567628 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 104, 76 |
| Conread position: | 159-441 |
| Cow position: | chr21:23803846-23804129 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 83, 53 |
| Conread position: | 208-490 |
| Cow position: | chr21:27150445-27150156 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 33, 68 |
| Conread position: | 238-443 |
| Cow position: | chr21:26648789-26648993 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 26, 32 |
| Conread position: | 247-484 |
| Cow position: | chr21:10851993-10851758 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 17, 27 |
| Conread position: | 247-490 |
| Cow position: | chr21:38802353-38802113 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 18, 23 |
| Conread position: | 268-492 |
| Cow position: | chr21:218902-218682 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 69, 44 |
Show alignments to all cow chromosomes.