Cow genome map

Conread name: Pig3-SRG8027B03

Conread position: 1-435
Cow position: chr22:13662455-13662033 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 294
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 5, 64

Conread position: 1-491
Cow position: chr22:44347887-44348363 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 119

Conread position: 1-502
Cow position: chr22:5314281-5313771 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 11

Conread position: 2-369
Cow position: chr22:36562443-36562820 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 204

Conread position: 4-296
Cow position: chr22:10548637-10548342 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 201

Conread position: 4-305
Cow position: chr22:13208403-13208100 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 220
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 46, 127

Conread position: 4-348
Cow position: chr22:25969429-25969770 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 123

Conread position: 4-369
Cow position: chr22:23429899-23430264 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 201

Conread position: 4-375
Cow position: chr22:8326236-8325871 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 163

Conread position: 4-386
Cow position: chr22:29853845-29853458 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 209

Conread position: 4-388
Cow position: chr22:1313014-1313401 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 123

Conread position: 4-414
Cow position: chr22:18029261-18028848 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 199

Conread position: 4-432
Cow position: chr22:44493040-44492608 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 305

Conread position: 4-444
Cow position: chr22:34609675-34609228 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 69

Conread position: 4-454
Cow position: chr22:44459650-44459189 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 169

Conread position: 4-471
Cow position: chr22:28784105-28783637 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 270

Conread position: 4-475
Cow position: chr22:15955040-15955509 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 261

Conread position: 4-480
Cow position: chr22:15853407-15852936 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 136

Conread position: 4-483
Cow position: chr22:34170327-34169846 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 271

Conread position: 4-484
Cow position: chr22:5936174-5936663 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 33

Conread position: 4-485
Cow position: chr22:95420-95886 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 308
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 221, 43

Conread position: 4-485
Cow position: chr22:325192-325676 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 79

Conread position: 4-485
Cow position: chr22:558716-559200 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 178

Conread position: 4-485
Cow position: chr22:30129571-30129089 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 78

Conread position: 4-485
Cow position: chr22:30147220-30146738 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 78

Conread position: 4-485
Cow position: chr22:31333061-31333540 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 50

Conread position: 4-485
Cow position: chr22:33352640-33352172 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 126

Conread position: 4-485
Cow position: chr22:36859560-36860039 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 226, 47

Conread position: 4-485
Cow position: chr22:37291685-37292169 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 270

Conread position: 4-485
Cow position: chr22:39467523-39468009 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 271

Conread position: 4-485
Cow position: chr22:42993162-42992684 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 210

Conread position: 4-485
Cow position: chr22:44398428-44397938 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 319

Conread position: 4-485
Cow position: chr22:45015337-45014854 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 199

Conread position: 4-485
Cow position: chr22:47328860-47328359 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 334
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 33, 18

Conread position: 4-489
Cow position: chr22:8664008-8664479 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 329
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 49, 101

Conread position: 4-490
Cow position: chr22:539097-538614 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 187

Conread position: 4-490
Cow position: chr22:1880797-1880309 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 271

Conread position: 4-490
Cow position: chr22:11803063-11803547 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 187

Conread position: 4-490
Cow position: chr22:30676722-30677209 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 270

Conread position: 4-490
Cow position: chr22:35669679-35670161 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 270

Conread position: 4-490
Cow position: chr22:46579730-46580213 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 41

Conread position: 4-490
Cow position: chr22:46584576-46585064 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 97

Conread position: 4-502
Cow position: chr22:297439-296933 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 178

Conread position: 4-502
Cow position: chr22:695610-695103 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 187

Conread position: 4-502
Cow position: chr22:3276362-3276870 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 212

Conread position: 4-502
Cow position: chr22:11806758-11807254 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 70

Conread position: 4-503
Cow position: chr22:1324141-1323639 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 26

Conread position: 4-503
Cow position: chr22:36277557-36277063 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 344
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 127, 44

Conread position: 5-444
Cow position: chr22:9046569-9046123 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 181

Conread position: 5-471
Cow position: chr22:14987773-14988235 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 122

Conread position: 6-310
Cow position: chr22:36574027-36574323 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 152

Conread position: 6-441
Cow position: chr22:6500936-6501364 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 225, 6

Conread position: 6-493
Cow position: chr22:20238851-20239338 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 6

Conread position: 6-496
Cow position: chr22:34601568-34601089 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 6

Conread position: 6-505
Cow position: chr22:41473708-41474221 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 190

Conread position: 7-502
Cow position: chr22:6022638-6022139 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 9

Conread position: 10-502
Cow position: chr22:4228472-4228958 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 341
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 42, 116

Conread position: 11-361
Cow position: chr22:36544964-36545298 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 249
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 35, 119

Conread position: 11-432
Cow position: chr22:48274362-48274779 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 231, 115

Conread position: 11-490
Cow position: chr22:2562783-2563250 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 230, 43

Conread position: 11-490
Cow position: chr22:44367497-44367977 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 202

Conread position: 12-381
Cow position: chr22:2849611-2849978 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 118

Conread position: 12-401
Cow position: chr22:34595724-34595343 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 91

Conread position: 12-458
Cow position: chr22:15280284-15279836 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 316
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 229, 33

Conread position: 12-485
Cow position: chr22:46615284-46614812 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 70

Conread position: 12-502
Cow position: chr22:3804158-3803667 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 49

Conread position: 12-509
Cow position: chr22:29499524-29499023 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 201

Conread position: 20-362
Cow position: chr22:36560093-36560440 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 256
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 27, 67

Conread position: 21-310
Cow position: chr22:40383012-40382721 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 216
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 18, 11

Conread position: 23-297
Cow position: chr22:40746310-40746046 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 185
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 23, 14

Conread position: 26-401
Cow position: chr22:23800268-23800638 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 260
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 18, 148

Conread position: 26-502
Cow position: chr22:289730-290212 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 47

Conread position: 32-471
Cow position: chr22:44935924-44935485 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 80

Conread position: 38-389
Cow position: chr22:36585867-36586228 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 120

Conread position: 44-490
Cow position: chr22:35911518-35911951 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 297
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 197, 84

Conread position: 48-414
Cow position: chr22:37413617-37413262 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 244
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 194, 21

Conread position: 55-443
Cow position: chr22:46421950-46422326 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 268
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 182, 26

Conread position: 56-310
Cow position: chr22:3272133-3272386 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 76

Conread position: 64-430
Cow position: chr22:317415-317043 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 136

Conread position: 77-438
Cow position: chr22:1862323-1861952 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 258
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 46, 70

Conread position: 91-500
Cow position: chr22:29011373-29011787 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 112

Conread position: 93-473
Cow position: chr22:14879559-14879937 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 249
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 55, 108

Conread position: 99-490
Cow position: chr22:32282786-32283177 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 113

Conread position: 107-473
Cow position: chr22:37142389-37142037 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 259
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 124, 19

Conread position: 111-441
Cow position: chr22:21336836-21336504 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 39

Conread position: 114-490
Cow position: chr22:27307899-27308273 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 192
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 16, 157

Conread position: 118-441
Cow position: chr22:8880972-8880647 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 226
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 110, 66

Conread position: 125-485
Cow position: chr22:14823832-14824193 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 248
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 14, 80

Conread position: 127-308
Cow position: chr22:5013935-5013751 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 138
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 104, 77

Conread position: 188-490
Cow position: chr22:10908031-10908331 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 177
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 61, 128

Conread position: 198-484
Cow position: chr22:37268961-37268677 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 166
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 29, 104

Conread position: 213-502
Cow position: chr22:16202692-16202400 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 211
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 7, 58

Conread position: 236-429
Cow position: chr22:46563424-46563233 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 134
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 100, 70

Conread position: 239-490
Cow position: chr22:21194744-21194993 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 184
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 25, 31

Conread position: 239-500
Cow position: chr22:869907-870173 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 186
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 75, 211

Conread position: 247-503
Cow position: chr22:38960852-38960592 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 187
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 108, 202

Conread position: 250-493
Cow position: chr22:521649-521894 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 175
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 14, 20

Conread position: 274-500
Cow position: chr22:8120064-8120291 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 162
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 89, 40

Conread position: 307-500
Cow position: chr22:3272401-3272593 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 138
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 55, 143

Show alignments to all cow chromosomes.