Cow genome map

Conread name: Pig3-SRG8027B03

Conread position: 1-296
Cow position: chr9:33951310-33951597 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 217
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 6, 116

Conread position: 1-420
Cow position: chr9:27691030-27691455 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 288
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 6, 17

Conread position: 1-432
Cow position: chr9:47004627-47004189 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 320

Conread position: 1-485
Cow position: chr9:5005874-5005392 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 99

Conread position: 1-485
Cow position: chr9:21411199-21410714 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 274

Conread position: 1-485
Cow position: chr9:37160925-37161407 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 32

Conread position: 1-496
Cow position: chr9:8403245-8402751 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 99

Conread position: 1-500
Cow position: chr9:1994514-1995013 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 75

Conread position: 2-485
Cow position: chr9:46041368-46041840 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 119

Conread position: 2-490
Cow position: chr9:30828632-30828144 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 252

Conread position: 2-490
Cow position: chr9:44385142-44384666 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 214

Conread position: 3-493
Cow position: chr9:129305-129793 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 210

Conread position: 4-296
Cow position: chr9:4648764-4649051 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 214
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 115, 41

Conread position: 4-310
Cow position: chr9:32970948-32970645 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 171

Conread position: 4-312
Cow position: chr9:31113003-31112703 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 232
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 43, 87

Conread position: 4-316
Cow position: chr9:3728723-3728403 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 26

Conread position: 4-360
Cow position: chr9:54988441-54988796 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 255
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 33, 114

Conread position: 4-375
Cow position: chr9:34770045-34769658 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 33

Conread position: 4-381
Cow position: chr9:31091068-31090686 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 248

Conread position: 4-386
Cow position: chr9:14001945-14001561 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 209

Conread position: 4-403
Cow position: chr9:52722334-52721922 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 125

Conread position: 4-417
Cow position: chr9:203404-203821 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 209

Conread position: 4-417
Cow position: chr9:8781038-8781455 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 209

Conread position: 4-429
Cow position: chr9:32294474-32294894 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 288
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 78, 33

Conread position: 4-432
Cow position: chr9:9328117-9328540 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 87

Conread position: 4-432
Cow position: chr9:29026041-29026465 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 141

Conread position: 4-441
Cow position: chr9:6709846-6709406 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 123

Conread position: 4-469
Cow position: chr9:59509281-59509738 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 101

Conread position: 4-471
Cow position: chr9:56302558-56303031 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 213

Conread position: 4-480
Cow position: chr9:35594202-35594671 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 136

Conread position: 4-483
Cow position: chr9:3935598-3936047 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 66

Conread position: 4-484
Cow position: chr9:2872220-2871741 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 123

Conread position: 4-485
Cow position: chr9:4718051-4717575 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 260, 41

Conread position: 4-485
Cow position: chr9:9014959-9014480 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 100

Conread position: 4-485
Cow position: chr9:9313273-9313733 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 119

Conread position: 4-485
Cow position: chr9:17304086-17304568 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 312

Conread position: 4-485
Cow position: chr9:18507943-18508419 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 16

Conread position: 4-485
Cow position: chr9:26737814-26737317 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 411

Conread position: 4-485
Cow position: chr9:37969336-37969802 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 201

Conread position: 4-485
Cow position: chr9:51180290-51180772 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 270

Conread position: 4-485
Cow position: chr9:64027319-64026840 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 211

Conread position: 4-489
Cow position: chr9:53529368-53528890 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 125

Conread position: 4-490
Cow position: chr9:778934-779416 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 66

Conread position: 4-490
Cow position: chr9:3310503-3310017 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 199

Conread position: 4-490
Cow position: chr9:4307469-4307959 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 113

Conread position: 4-490
Cow position: chr9:4941913-4942405 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 274

Conread position: 4-490
Cow position: chr9:17062499-17062981 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 229

Conread position: 4-490
Cow position: chr9:28679845-28679368 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 209

Conread position: 4-490
Cow position: chr9:38678030-38677547 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 136

Conread position: 4-490
Cow position: chr9:45875402-45874920 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 28

Conread position: 4-490
Cow position: chr9:47043850-47043363 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 148

Conread position: 4-490
Cow position: chr9:50792605-50792116 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 209

Conread position: 4-490
Cow position: chr9:64014783-64015267 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 123

Conread position: 4-494
Cow position: chr9:3223767-3224242 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 33

Conread position: 4-498
Cow position: chr9:54680862-54681352 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 167

Conread position: 4-500
Cow position: chr9:827227-827721 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 67

Conread position: 4-501
Cow position: chr9:29788805-29789297 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 18

Conread position: 4-502
Cow position: chr9:1250109-1250612 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 123

Conread position: 4-502
Cow position: chr9:2680166-2679652 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 8

Conread position: 4-502
Cow position: chr9:27784073-27783570 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 134

Conread position: 5-381
Cow position: chr9:37066748-37066364 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 146

Conread position: 6-381
Cow position: chr9:29333470-29333091 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 6

Conread position: 6-485
Cow position: chr9:6978210-6977728 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 331
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 40, 8

Conread position: 6-485
Cow position: chr9:26082665-26083161 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 205

Conread position: 7-500
Cow position: chr9:12182543-12183043 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 342
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 39, 8

Conread position: 11-485
Cow position: chr9:1074292-1074769 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 189

Conread position: 11-490
Cow position: chr9:2213023-2212543 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 264

Conread position: 12-435
Cow position: chr9:20175831-20176270 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 99

Conread position: 12-490
Cow position: chr9:31066598-31066121 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 138

Conread position: 13-373
Cow position: chr9:2496862-2497223 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 19

Conread position: 14-485
Cow position: chr9:19157666-19158126 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 116

Conread position: 15-495
Cow position: chr9:50699164-50698693 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 21

Conread position: 23-432
Cow position: chr9:2000283-2000691 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 273
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 15, 68

Conread position: 26-372
Cow position: chr9:50774613-50774262 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 252

Conread position: 39-306
Cow position: chr9:22440927-22440655 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 196
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 16, 164

Conread position: 48-485
Cow position: chr9:2866151-2866572 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 295
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 96, 11

Conread position: 54-415
Cow position: chr9:28701520-28701177 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 248
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 62, 76

Conread position: 54-441
Cow position: chr9:30190467-30190871 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 22

Conread position: 66-501
Cow position: chr9:26101443-26101884 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 63

Conread position: 76-485
Cow position: chr9:30674194-30673786 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 227
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 142, 195

Conread position: 90-351
Cow position: chr9:49302923-49303178 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 190
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 151, 36

Conread position: 90-484
Cow position: chr9:2172745-2172348 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 113

Conread position: 91-493
Cow position: chr9:59428802-59428400 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 283
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 39, 151

Conread position: 92-444
Cow position: chr9:4283757-4283405 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 242
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 128, 34

Conread position: 92-494
Cow position: chr9:49456953-49456538 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 286
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 28, 54

Conread position: 93-435
Cow position: chr9:29043965-29044308 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 112

Conread position: 99-490
Cow position: chr9:51212475-51212086 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 67

Conread position: 101-505
Cow position: chr9:54926317-54925921 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 232, 39

Conread position: 115-490
Cow position: chr9:25904298-25903927 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 19

Conread position: 124-500
Cow position: chr9:6251053-6250674 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 259
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 106, 191

Conread position: 129-505
Cow position: chr9:29333020-29332628 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 283
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 113, 75

Conread position: 130-486
Cow position: chr9:17069176-17069518 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 237
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 7, 59

Conread position: 132-485
Cow position: chr9:12913543-12913185 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 255
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 99, 51

Conread position: 140-476
Cow position: chr9:9647889-9647558 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 238
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 101, 23

Conread position: 141-490
Cow position: chr9:25033815-25034158 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 249
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 90, 71

Conread position: 144-485
Cow position: chr9:5142443-5142104 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 233
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 84, 58

Conread position: 149-417
Cow position: chr9:17313118-17312852 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 191
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 98, 38

Conread position: 166-485
Cow position: chr9:4666893-4666586 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 218
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 78, 37

Conread position: 176-466
Cow position: chr9:3168886-3168608 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 201
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 179, 28

Conread position: 208-490
Cow position: chr9:50093549-50093834 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 211
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 23, 67

Conread position: 209-369
Cow position: chr9:35106179-35106013 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 125
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 25, 101

Conread position: 239-447
Cow position: chr9:3805000-3804795 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 147
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 25, 31

Conread position: 239-485
Cow position: chr9:28001175-28000925 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 178
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 25, 31

Conread position: 239-490
Cow position: chr9:10976766-10976518 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 188
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 26, 31

Conread position: 239-490
Cow position: chr9:27936031-27935783 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 186
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 26, 31

Conread position: 239-493
Cow position: chr9:26568246-26568000 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 174
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 192, 73

Show alignments to all cow chromosomes.