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Cow genome map

           
Conread name:
           
Pig3-SRG8028A22
        

               
Conread position:
               
83-321
               

               
Cow position:
               
chr11:63640617-63640872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
14, 224
               

               
Conread position:
               
88-434
               

               
Cow position:
               
chr11:29659794-29659452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
39, 115
               

               
Conread position:
               
91-316
               

               
Cow position:
               
chr11:63849726-63849946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
74, 10
               

               
Conread position:
               
93-360
               

               
Cow position:
               
chr11:37435755-37436024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
13, 125
               

               
Conread position:
               
94-614
               

               
Cow position:
               
chr11:83357621-83357106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 7
               

               
Conread position:
               
95-614
               

               
Cow position:
               
chr11:31413678-31413164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 7
               

               
Conread position:
               
96-548
               

               
Cow position:
               
chr11:2925081-2925511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 117
               

               
Conread position:
               
97-446
               

               
Cow position:
               
chr11:29308804-29308451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
72, 27
               

               
Conread position:
               
97-484
               

               
Cow position:
               
chr11:45435298-45434926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
79, 18
               

               
Conread position:
               
99-486
               

               
Cow position:
               
chr11:83926254-83925883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
48, 71
               

               
Conread position:
               
100-483
               

               
Cow position:
               
chr11:2575687-2576063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
30, 16
               

               
Conread position:
               
102-445
               

               
Cow position:
               
chr11:35536793-35536462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
190, 29
               

               
Conread position:
               
102-615
               

               
Cow position:
               
chr11:26066968-26067467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 75
               

               
Conread position:
               
103-407
               

               
Cow position:
               
chr11:64105211-64104913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
62, 111
               

               
Conread position:
               
103-519
               

               
Cow position:
               
chr11:48383747-48383333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 18
               

               
Conread position:
               
103-576
               

               
Cow position:
               
chr11:2084363-2083899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 109
               

               
Conread position:
               
104-450
               

               
Cow position:
               
chr11:13940405-13940065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
28, 89
               

               
Conread position:
               
106-342
               

               
Cow position:
               
chr11:17517614-17517378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
76, 105
               

               
Conread position:
               
106-347
               

               
Cow position:
               
chr11:32782654-32782909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
106-454
               

               
Cow position:
               
chr11:64867800-64868145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
39, 91
               

               
Conread position:
               
106-487
               

               
Cow position:
               
chr11:42919001-42919391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
69, 331
               

               
Conread position:
               
106-511
               

               
Cow position:
               
chr11:66572278-66572688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 36
               

               
Conread position:
               
107-289
               

               
Cow position:
               
chr11:27413598-27413782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
62, 39
               

               
Conread position:
               
107-334
               

               
Cow position:
               
chr11:58111732-58111967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
59, 17
               

               
Conread position:
               
107-342
               

               
Cow position:
               
chr11:84775303-84775054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
78, 29
               

               
Conread position:
               
107-413
               

               
Cow position:
               
chr11:67312998-67312681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 29
               

               
Conread position:
               
107-614
               

               
Cow position:
               
chr11:44032219-44031713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 35
               

               
Conread position:
               
107-623
               

               
Cow position:
               
chr11:65826540-65827029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 92
               

               
Conread position:
               
108-551
               

               
Cow position:
               
chr11:70422382-70422793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
58, 103
               

               
Conread position:
               
109-334
               

               
Cow position:
               
chr11:25604167-25603935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
109-595
               

               
Cow position:
               
chr11:36940381-36940868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 106
               

               
Conread position:
               
111-532
               

               
Cow position:
               
chr11:38334731-38334310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 102
               

               
Conread position:
               
111-614
               

               
Cow position:
               
chr11:18699081-18698588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 104
               

               
Conread position:
               
113-459
               

               
Cow position:
               
chr11:43008104-43008441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
69, 10
               

               
Conread position:
               
114-416
               

               
Cow position:
               
chr11:63397020-63396724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
18, 50
               

               
Conread position:
               
114-565
               

               
Cow position:
               
chr11:27404862-27405306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 111
               

               
Conread position:
               
114-607
               

               
Cow position:
               
chr11:84385433-84385922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 97
               

               
Conread position:
               
114-615
               

               
Cow position:
               
chr11:7924396-7924876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 57
               

               
Conread position:
               
115-352
               

               
Cow position:
               
chr11:30867380-30867153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
51, 9
               

               
Conread position:
               
115-356
               

               
Cow position:
               
chr11:32260737-32260500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
53, 99
               

               
Conread position:
               
115-547
               

               
Cow position:
               
chr11:15772508-15772942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 27
               

               
Conread position:
               
115-612
               

               
Cow position:
               
chr11:1380884-1380408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
27, 100
               

               
Conread position:
               
115-614
               

               
Cow position:
               
chr11:85723901-85723415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 16
               

               
Conread position:
               
116-328
               

               
Cow position:
               
chr11:12555100-12555312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
53, 26
               

               
Conread position:
               
116-333
               

               
Cow position:
               
chr11:25968649-25968862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
52, 15
               

               
Conread position:
               
116-439
               

               
Cow position:
               
chr11:39060402-39060716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
53, 25
               

               
Conread position:
               
116-463
               

               
Cow position:
               
chr11:69978170-69977838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
21, 5
               

               
Conread position:
               
116-535
               

               
Cow position:
               
chr11:71492659-71493068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 95
               

               
Conread position:
               
116-601
               

               
Cow position:
               
chr11:55744674-55744200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 98
               

               
Conread position:
               
116-603
               

               
Cow position:
               
chr11:15285400-15285893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 53
               

               
Conread position:
               
116-615
               

               
Cow position:
               
chr11:13500215-13499727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 51
               

               
Conread position:
               
117-289
               

               
Cow position:
               
chr11:81175802-81175630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
49, 96
               

               
Conread position:
               
117-332
               

               
Cow position:
               
chr11:41979998-41980215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
13, 99
               

               
Conread position:
               
117-367
               

               
Cow position:
               
chr11:11523239-11523513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
59, 24
               

               
Conread position:
               
117-457
               

               
Cow position:
               
chr11:62742443-62742766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
24, 97
               

               
Conread position:
               
117-476
               

               
Cow position:
               
chr11:32254007-32254371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
19, 102
               

               
Conread position:
               
117-497
               

               
Cow position:
               
chr11:76890247-76889875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
21, 43
               

               
Conread position:
               
117-535
               

               
Cow position:
               
chr11:72375463-72375896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 19
               

               
Conread position:
               
117-548
               

               
Cow position:
               
chr11:14470569-14470146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 91
               

               
Conread position:
               
117-602
               

               
Cow position:
               
chr11:6399860-6400346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 97
               

               
Conread position:
               
117-613
               

               
Cow position:
               
chr11:77745044-77745539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 110
               

               
Conread position:
               
117-614
               

               
Cow position:
               
chr11:17889524-17890009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 19
               

               
Conread position:
               
117-615
               

               
Cow position:
               
chr11:14649105-14649600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 99
               

               
Conread position:
               
117-620
               

               
Cow position:
               
chr11:63519198-63518723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 45
               

               
Conread position:
               
118-309
               

               
Cow position:
               
chr11:68570180-68570368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
51, 13
               

               
Conread position:
               
118-361
               

               
Cow position:
               
chr11:48248009-48248255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
53, 12
               

               
Conread position:
               
119-605
               

               
Cow position:
               
chr11:43643907-43644376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
54, 83
               

               
Conread position:
               
120-320
               

               
Cow position:
               
chr11:44620154-44619956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
62, 101
               

               
Conread position:
               
120-361
               

               
Cow position:
               
chr11:63485133-63484907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
9, 17
               

               
Conread position:
               
120-436
               

               
Cow position:
               
chr11:48086117-48085805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
49, 21
               

               
Conread position:
               
120-459
               

               
Cow position:
               
chr11:59024152-59024489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
49, 171
               

               
Conread position:
               
120-472
               

               
Cow position:
               
chr11:23407663-23407313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 91
               

               
Conread position:
               
120-560
               

               
Cow position:
               
chr11:33347998-33348417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 55
               

               
Conread position:
               
120-589
               

               
Cow position:
               
chr11:30165711-30165249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 11
               

               
Conread position:
               
120-597
               

               
Cow position:
               
chr11:53773884-53773403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 106
               

               
Conread position:
               
120-614
               

               
Cow position:
               
chr11:62490623-62490147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 88
               

               
Conread position:
               
121-321
               

               
Cow position:
               
chr11:80007864-80008067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
46, 20
               

               
Conread position:
               
121-325
               

               
Cow position:
               
chr11:23220559-23220358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
48, 10
               

               
Conread position:
               
121-326
               

               
Cow position:
               
chr11:57767390-57767186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
20, 93
               

               
Conread position:
               
121-327
               

               
Cow position:
               
chr11:81614322-81614519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
15, 49
               

               
Conread position:
               
121-330
               

               
Cow position:
               
chr11:23278765-23278972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
61, 20
               

               
Conread position:
               
121-337
               

               
Cow position:
               
chr11:37099972-37100184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
48, 93
               

               
Conread position:
               
121-340
               

               
Cow position:
               
chr11:66099655-66099881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
121-342
               

               
Cow position:
               
chr11:46884579-46884353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
33, 97
               

               
Conread position:
               
121-345
               

               
Cow position:
               
chr11:54428820-54428596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
47, 94
               

               
Conread position:
               
121-355
               

               
Cow position:
               
chr11:66939388-66939626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
15, 96
               

               
Conread position:
               
121-356
               

               
Cow position:
               
chr11:897864-897639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
61, 81
               

               
Conread position:
               
121-360
               

               
Cow position:
               
chr11:62889691-62889932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
21, 94
               

               
Conread position:
               
121-366
               

               
Cow position:
               
chr11:15369591-15369344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
17, 95
               

               
Conread position:
               
121-370
               

               
Cow position:
               
chr11:25119735-25119978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
8, 94
               

               
Conread position:
               
121-413
               

               
Cow position:
               
chr11:36914365-36914657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
47, 92
               

               
Conread position:
               
121-415
               

               
Cow position:
               
chr11:36978009-36977714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
11, 95
               

               
Conread position:
               
121-417
               

               
Cow position:
               
chr11:8437490-8437783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
61, 104
               

               
Conread position:
               
121-422
               

               
Cow position:
               
chr11:30370298-30370009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
11, 44
               

               
Conread position:
               
121-425
               

               
Cow position:
               
chr11:16315074-16314771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
45, 93
               

               
Conread position:
               
121-446
               

               
Cow position:
               
chr11:42067062-42066738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
48, 20
               

               
Conread position:
               
121-460
               

               
Cow position:
               
chr11:52690326-52690659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 10
               

               
Conread position:
               
121-473
               

               
Cow position:
               
chr11:45742570-45742232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
59, 27
               

               
Conread position:
               
121-474
               

               
Cow position:
               
chr11:71805966-71806294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
45, 83
               

               
Conread position:
               
121-483
               

               
Cow position:
               
chr11:3175868-3175531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
22, 10
               

               
Conread position:
               
121-491
               

               
Cow position:
               
chr11:45619549-45619182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
47, 10
               

               
Conread position:
               
121-493
               

               
Cow position:
               
chr11:41133880-41134235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
48, 93
               

               
Conread position:
               
121-503
               

               
Cow position:
               
chr11:36058998-36058625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
48, 93
               

               
Conread position:
               
121-517
               

               
Cow position:
               
chr11:27913487-27913080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 95
               

               
Conread position:
               
121-562
               

               
Cow position:
               
chr11:5961510-5961078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
17, 95
               

               
Conread position:
               
121-578
               

               
Cow position:
               
chr11:36112609-36112166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 48
               

               
Conread position:
               
121-590
               

               
Cow position:
               
chr11:36194495-36194030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 72
               

               
Conread position:
               
121-590
               

               
Cow position:
               
chr11:55053061-55052610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 10
               

               
Conread position:
               
121-601
               

               
Cow position:
               
chr11:76369329-76369795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 45
               

               
Conread position:
               
121-604
               

               
Cow position:
               
chr11:17278481-17278938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 70
               

               
Conread position:
               
121-606
               

               
Cow position:
               
chr11:30476194-30475721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 10
               

               
Conread position:
               
121-614
               

               
Cow position:
               
chr11:49210617-49211117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 124
               

               
Conread position:
               
121-615
               

               
Cow position:
               
chr11:44223079-44222613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 15
               

               
Conread position:
               
121-619
               

               
Cow position:
               
chr11:38831169-38831662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
44, 122
               

               
Conread position:
               
121-628
               

               
Cow position:
               
chr11:31866779-31866298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
69, 52
               

               
Conread position:
               
121-645
               

               
Cow position:
               
chr11:20762052-20761527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 180
               

               
Conread position:
               
122-486
               

               
Cow position:
               
chr11:11647295-11646907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
47, 13
               

               
Conread position:
               
122-590
               

               
Cow position:
               
chr11:27747116-27746655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 9
               

               
Conread position:
               
123-534
               

               
Cow position:
               
chr11:9464035-9463622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 87
               

               
Conread position:
               
123-614
               

               
Cow position:
               
chr11:70483651-70484148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 65
               

               
Conread position:
               
123-615
               

               
Cow position:
               
chr11:11125863-11125375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 123
               

               
Conread position:
               
124-285
               

               
Cow position:
               
chr11:2830853-2830694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
45, 87
               

               
Conread position:
               
124-321
               

               
Cow position:
               
chr11:42206611-42206422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
58, 17
               

               
Conread position:
               
124-337
               

               
Cow position:
               
chr11:19578131-19577926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
166, 51
               

               
Conread position:
               
124-350
               

               
Cow position:
               
chr11:43914489-43914263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
45, 7
               

               
Conread position:
               
124-351
               

               
Cow position:
               
chr11:17638322-17638564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
45, 18
               

               
Conread position:
               
124-355
               

               
Cow position:
               
chr11:3896503-3896732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
45, 17
               

               
Conread position:
               
124-361
               

               
Cow position:
               
chr11:71934750-71934994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
27, 74
               

               
Conread position:
               
124-363
               

               
Cow position:
               
chr11:4225281-4225056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
20, 26
               

               
Conread position:
               
124-367
               

               
Cow position:
               
chr11:3715018-3714780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
45, 7
               

               
Conread position:
               
124-368
               

               
Cow position:
               
chr11:28078685-28078457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
41, 7
               

               
Conread position:
               
124-378
               

               
Cow position:
               
chr11:62811493-62811239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
43, 88
               

               
Conread position:
               
124-401
               

               
Cow position:
               
chr11:48233035-48232745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
58, 18
               

               
Conread position:
               
124-404
               

               
Cow position:
               
chr11:62230386-62230093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
14, 138
               

               
Conread position:
               
124-414
               

               
Cow position:
               
chr11:21508207-21507913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
45, 18
               

               
Conread position:
               
124-419
               

               
Cow position:
               
chr11:8670213-8669912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
45, 7
               

               
Conread position:
               
124-441
               

               
Cow position:
               
chr11:63998895-63999207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
46, 17
               

               
Conread position:
               
124-457
               

               
Cow position:
               
chr11:70756671-70756348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 80
               

               
Conread position:
               
124-460
               

               
Cow position:
               
chr11:261060-261399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
41, 249
               

               
Conread position:
               
124-471
               

               
Cow position:
               
chr11:49057579-49057255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 7
               

               
Conread position:
               
124-513
               

               
Cow position:
               
chr11:6245517-6245123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 7
               

               
Conread position:
               
124-537
               

               
Cow position:
               
chr11:63433867-63434268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 84
               

               
Conread position:
               
124-575
               

               
Cow position:
               
chr11:42884588-42885018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
45, 91
               

               
Conread position:
               
124-593
               

               
Cow position:
               
chr11:35347554-35348023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 90
               

               
Conread position:
               
124-602
               

               
Cow position:
               
chr11:79728475-79728948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 41
               

               
Conread position:
               
124-603
               

               
Cow position:
               
chr11:53778816-53778337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 18
               

               
Conread position:
               
124-610
               

               
Cow position:
               
chr11:21549681-21549213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
18, 90
               

               
Conread position:
               
124-614
               

               
Cow position:
               
chr11:1485662-1486155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 91
               

               
Conread position:
               
124-614
               

               
Cow position:
               
chr11:5418063-5418550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
49, 79
               

               
Conread position:
               
124-614
               

               
Cow position:
               
chr11:15467643-15467183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
45, 82
               

               
Conread position:
               
124-614
               

               
Cow position:
               
chr11:42016441-42016925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 35
               

               
Conread position:
               
124-614
               

               
Cow position:
               
chr11:77750564-77751052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 25
               

               
Conread position:
               
124-615
               

               
Cow position:
               
chr11:33414424-33413946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 53
               

               
Conread position:
               
125-334
               

               
Cow position:
               
chr11:49396330-49396538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
19, 6
               

               
Conread position:
               
125-346
               

               
Cow position:
               
chr11:47784976-47784750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
125-384
               

               
Cow position:
               
chr11:17990043-17990300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
41, 10
               

               
Conread position:
               
125-447
               

               
Cow position:
               
chr11:372516-372818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
8, 46
               

               
Conread position:
               
125-537
               

               
Cow position:
               
chr11:65607491-65607903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 95
               

               
Conread position:
               
125-579
               

               
Cow position:
               
chr11:20238873-20238421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 90
               

               
Conread position:
               
126-446
               

               
Cow position:
               
chr11:53510312-53510620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
56, 16
               

               
Conread position:
               
126-540
               

               
Cow position:
               
chr11:35212976-35213379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 78
               

               
Conread position:
               
126-602
               

               
Cow position:
               
chr11:52380679-52381145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 15
               

               
Conread position:
               
128-359
               

               
Cow position:
               
chr11:53717598-53717844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
41, 62
               

               
Conread position:
               
128-447
               

               
Cow position:
               
chr11:57874002-57873706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
7, 84
               

               
Conread position:
               
128-503
               

               
Cow position:
               
chr11:26143906-26144278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 37
               

               
Conread position:
               
128-597
               

               
Cow position:
               
chr11:30708697-30708234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 14
               

               
Conread position:
               
128-605
               

               
Cow position:
               
chr11:258979-259456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 85
               

               
Conread position:
               
128-607
               

               
Cow position:
               
chr11:17321861-17321382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 124
               

               
Conread position:
               
128-614
               

               
Cow position:
               
chr11:21893956-21894440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 135
               

               
Conread position:
               
128-615
               

               
Cow position:
               
chr11:45283120-45282649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 66
               

               
Conread position:
               
128-616
               

               
Cow position:
               
chr11:38236439-38235955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 38
               

               
Conread position:
               
128-616
               

               
Cow position:
               
chr11:87155709-87155230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 20
               

               
Conread position:
               
129-352
               

               
Cow position:
               
chr11:49255602-49255374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
40, 150
               

               
Conread position:
               
129-361
               

               
Cow position:
               
chr11:71111089-71110852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
40, 13
               

               
Conread position:
               
129-371
               

               
Cow position:
               
chr11:78820341-78820107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
38, 86
               

               
Conread position:
               
129-373
               

               
Cow position:
               
chr11:41213244-41212990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
37, 96
               

               
Conread position:
               
129-406
               

               
Cow position:
               
chr11:4429930-4430210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
14, 74
               

               
Conread position:
               
129-418
               

               
Cow position:
               
chr11:7013536-7013838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
38, 177
               

               
Conread position:
               
129-449
               

               
Cow position:
               
chr11:27719148-27719448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
38, 7
               

               
Conread position:
               
129-459
               

               
Cow position:
               
chr11:13863908-13864233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
25, 87
               

               
Conread position:
               
129-552
               

               
Cow position:
               
chr11:29960483-29960080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 17
               

               
Conread position:
               
129-603
               

               
Cow position:
               
chr11:18508839-18509284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 34
               

               
Conread position:
               
129-603
               

               
Cow position:
               
chr11:58102566-58103050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 7
               

               
Conread position:
               
129-608
               

               
Cow position:
               
chr11:83043175-83043641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 88
               

               
Conread position:
               
129-623
               

               
Cow position:
               
chr11:3283233-3282763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 178
               

               
Conread position:
               
130-350
               

               
Cow position:
               
chr11:2900522-2900749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
130-356
               

               
Cow position:
               
chr11:21886021-21885799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
52, 79
               

               
Conread position:
               
130-481
               

               
Cow position:
               
chr11:30808406-30808759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
52, 39
               

               
Conread position:
               
130-482
               

               
Cow position:
               
chr11:6202648-6202288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 252
               

               
Conread position:
               
130-492
               

               
Cow position:
               
chr11:55494855-55494514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
162, 35
               

               
Conread position:
               
130-513
               

               
Cow position:
               
chr11:68841400-68841015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
39, 83
               

               
Conread position:
               
130-547
               

               
Cow position:
               
chr11:39462810-39462398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 79
               

               
Conread position:
               
130-601
               

               
Cow position:
               
chr11:48429309-48428821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
32, 21
               

               
Conread position:
               
130-609
               

               
Cow position:
               
chr11:22977692-22978138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 16
               

               
Conread position:
               
130-614
               

               
Cow position:
               
chr11:77705943-77705478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 85
               

               
Conread position:
               
131-286
               

               
Cow position:
               
chr11:7928867-7928710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
51, 44
               

               
Conread position:
               
131-309
               

               
Cow position:
               
chr11:74839792-74839623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
51, 11
               

               
Conread position:
               
131-317
               

               
Cow position:
               
chr11:74152558-74152750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
131-334
               

               
Cow position:
               
chr11:60296928-60296718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
38, 132
               

               
Conread position:
               
131-336
               

               
Cow position:
               
chr11:42786492-42786698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
36, 111
               

               
Conread position:
               
131-352
               

               
Cow position:
               
chr11:34968423-34968644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
35, 83
               

               
Conread position:
               
131-360
               

               
Cow position:
               
chr11:30172489-30172271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
38, 84
               

               
Conread position:
               
131-361
               

               
Cow position:
               
chr11:35669776-35669991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
51, 38
               

               
Conread position:
               
131-361
               

               
Cow position:
               
chr11:37778627-37778870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
42, 206
               

               
Conread position:
               
131-361
               

               
Cow position:
               
chr11:46922697-46922925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
37, 80
               

               
Conread position:
               
131-363
               

               
Cow position:
               
chr11:29699497-29699741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
38, 205
               

               
Conread position:
               
131-366
               

               
Cow position:
               
chr11:47883013-47882759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
38, 17
               

               
Conread position:
               
131-410
               

               
Cow position:
               
chr11:72871087-72870814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
51, 38
               

               
Conread position:
               
131-413
               

               
Cow position:
               
chr11:6643004-6642719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
35, 83
               

               
Conread position:
               
131-418
               

               
Cow position:
               
chr11:1067249-1067537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
34, 18
               

               
Conread position:
               
131-433
               

               
Cow position:
               
chr11:19946611-19946327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
31, 42
               

               
Conread position:
               
131-435
               

               
Cow position:
               
chr11:31024611-31024921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
37, 137
               

               
Conread position:
               
131-447
               

               
Cow position:
               
chr11:7385625-7385306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
11, 83
               

               
Conread position:
               
131-449
               

               
Cow position:
               
chr11:47837509-47837188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 67
               

               
Conread position:
               
131-453
               

               
Cow position:
               
chr11:41293613-41293948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 244
               

               
Conread position:
               
131-454
               

               
Cow position:
               
chr11:67614735-67615059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
38, 84
               

               
Conread position:
               
131-457
               

               
Cow position:
               
chr11:61526270-61525935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
14, 138
               

               
Conread position:
               
131-465
               

               
Cow position:
               
chr11:49872698-49873029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
38, 11
               

               
Conread position:
               
131-515
               

               
Cow position:
               
chr11:37804362-37804746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 83
               

               
Conread position:
               
131-518
               

               
Cow position:
               
chr11:20684380-20684770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
38, 83
               

               
Conread position:
               
131-521
               

               
Cow position:
               
chr11:5075040-5075416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
38, 70
               

               
Conread position:
               
131-521
               

               
Cow position:
               
chr11:70600637-70601017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 69
               

               
Conread position:
               
131-526
               

               
Cow position:
               
chr11:15339245-15338876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
51, 35
               

               
Conread position:
               
131-561
               

               
Cow position:
               
chr11:25620200-25620629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 81
               

               
Conread position:
               
131-575
               

               
Cow position:
               
chr11:30638762-30639196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 70
               

               
Conread position:
               
131-576
               

               
Cow position:
               
chr11:7458090-7458534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
37, 81
               

               
Conread position:
               
131-582
               

               
Cow position:
               
chr11:49153130-49152699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
329, 42
               

               
Conread position:
               
131-597
               

               
Cow position:
               
chr11:66041462-66041004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 107
               

               
Conread position:
               
131-602
               

               
Cow position:
               
chr11:15504299-15503826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 83
               

               
Conread position:
               
131-603
               

               
Cow position:
               
chr11:61454312-61454810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 62
               

               
Conread position:
               
131-603
               

               
Cow position:
               
chr11:81138402-81137946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 83
               

               
Conread position:
               
131-607
               

               
Cow position:
               
chr11:67931301-67931774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 83
               

               
Conread position:
               
131-608
               

               
Cow position:
               
chr11:81143354-81143839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 73
               

               
Conread position:
               
131-612
               

               
Cow position:
               
chr11:70382499-70382979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 83
               

               
Conread position:
               
131-614
               

               
Cow position:
               
chr11:10095533-10095056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 83
               

               
Conread position:
               
131-614
               

               
Cow position:
               
chr11:40459295-40458834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 34
               

               
Conread position:
               
131-619
               

               
Cow position:
               
chr11:18484011-18484451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 80
               

               
Conread position:
               
132-285
               

               
Cow position:
               
chr11:84748047-84748203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
36, 48
               

               
Conread position:
               
132-326
               

               
Cow position:
               
chr11:29482252-29482440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
158, 45
               

               
Conread position:
               
132-338
               

               
Cow position:
               
chr11:87171887-87172093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
34, 73
               

               
Conread position:
               
132-347
               

               
Cow position:
               
chr11:73983802-73984029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
36, 10
               

               
Conread position:
               
132-355
               

               
Cow position:
               
chr11:69417592-69417370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
37, 83
               

               
Conread position:
               
132-363
               

               
Cow position:
               
chr11:58173824-58173584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
33, 179
               

               
Conread position:
               
132-428
               

               
Cow position:
               
chr11:31228142-31227864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
159, 29
               

               
Conread position:
               
132-440
               

               
Cow position:
               
chr11:11994528-11994822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
50, 19
               

               
Conread position:
               
132-462
               

               
Cow position:
               
chr11:40608404-40608734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
37, 73
               

               
Conread position:
               
132-503
               

               
Cow position:
               
chr11:9270548-9270907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 38
               

               
Conread position:
               
132-513
               

               
Cow position:
               
chr11:34646783-34646402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 10
               

               
Conread position:
               
132-520
               

               
Cow position:
               
chr11:47638835-47639223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
35, 85
               

               
Conread position:
               
132-548
               

               
Cow position:
               
chr11:35724159-35723756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 81
               

               
Conread position:
               
132-573
               

               
Cow position:
               
chr11:57724634-57725074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 87
               

               
Conread position:
               
132-582
               

               
Cow position:
               
chr11:40818444-40818893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 19
               

               
Conread position:
               
132-582
               

               
Cow position:
               
chr11:48650175-48649706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 244
               

               
Conread position:
               
132-582
               

               
Cow position:
               
chr11:66188131-66188576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 81
               

               
Conread position:
               
132-597
               

               
Cow position:
               
chr11:13061063-13061493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 56
               

               
Conread position:
               
132-601
               

               
Cow position:
               
chr11:65495155-65495601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 80
               

               
Conread position:
               
132-606
               

               
Cow position:
               
chr11:46746827-46746357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 62
               

               
Conread position:
               
132-611
               

               
Cow position:
               
chr11:67804925-67804469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 11
               

               
Conread position:
               
132-614
               

               
Cow position:
               
chr11:45276960-45277442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 10
               

               
Conread position:
               
132-615
               

               
Cow position:
               
chr11:68909665-68910136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 17
               

               
Conread position:
               
132-619
               

               
Cow position:
               
chr11:17831017-17831519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 202
               

               
Conread position:
               
132-619
               

               
Cow position:
               
chr11:62226200-62225708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
12, 223
               

               
Conread position:
               
132-629
               

               
Cow position:
               
chr11:80923136-80923636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 80
               

               
Conread position:
               
133-323
               

               
Cow position:
               
chr11:80296671-80296854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
49, 73
               

               
Conread position:
               
133-367
               

               
Cow position:
               
chr11:82730796-82731043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
133-370
               

               
Cow position:
               
chr11:71854094-71854327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
21, 82
               

               
Conread position:
               
133-399
               

               
Cow position:
               
chr11:68883908-68883646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
34, 81
               

               
Conread position:
               
133-420
               

               
Cow position:
               
chr11:17676187-17676467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
35, 78
               

               
Conread position:
               
133-437
               

               
Cow position:
               
chr11:31875277-31874979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
49, 24
               

               
Conread position:
               
133-445
               

               
Cow position:
               
chr11:47310796-47311106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
33, 84
               

               
Conread position:
               
133-458
               

               
Cow position:
               
chr11:75285568-75285902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
34, 85
               

               
Conread position:
               
133-467
               

               
Cow position:
               
chr11:21421750-21422079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
40, 82
               

               
Conread position:
               
133-486
               

               
Cow position:
               
chr11:32693306-32693634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
325, 36
               

               
Conread position:
               
133-499
               

               
Cow position:
               
chr11:32054997-32055360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
36, 66
               

               
Conread position:
               
133-516
               

               
Cow position:
               
chr11:7874329-7873957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
15, 82
               

               
Conread position:
               
133-529
               

               
Cow position:
               
chr11:64077314-64077703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
36, 93
               

               
Conread position:
               
133-533
               

               
Cow position:
               
chr11:19591808-19592203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 78
               

               
Conread position:
               
133-571
               

               
Cow position:
               
chr11:50073143-50072718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
34, 45
               

               
Conread position:
               
133-614
               

               
Cow position:
               
chr11:2788583-2788093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 81
               

               
Conread position:
               
133-614
               

               
Cow position:
               
chr11:24438031-24438523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
35, 65
               

               
Conread position:
               
133-619
               

               
Cow position:
               
chr11:41549150-41549617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 12
               

               
Conread position:
               
134-404
               

               
Cow position:
               
chr11:17721613-17721885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
10, 81
               

               
Conread position:
               
134-602
               

               
Cow position:
               
chr11:17227464-17227914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 67
               

               
Conread position:
               
134-603
               

               
Cow position:
               
chr11:23251412-23251878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 67
               

               
Conread position:
               
134-614
               

               
Cow position:
               
chr11:27248674-27248206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 9
               

               
Conread position:
               
135-302
               

               
Cow position:
               
chr11:71192158-71191990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
34, 66
               

               
Conread position:
               
135-369
               

               
Cow position:
               
chr11:20205672-20205899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
91, 34
               

               
Conread position:
               
135-415
               

               
Cow position:
               
chr11:62812766-62813041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
22, 79
               

               
Conread position:
               
135-449
               

               
Cow position:
               
chr11:83032863-83032558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
34, 81
               

               
Conread position:
               
135-531
               

               
Cow position:
               
chr11:27932488-27932062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 302
               

               
Conread position:
               
135-614
               

               
Cow position:
               
chr11:30721286-30720811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
34, 84
               

               
Conread position:
               
135-619
               

               
Cow position:
               
chr11:74316892-74316415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 78
               

               
Conread position:
               
135-623
               

               
Cow position:
               
chr11:4436518-4436037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 41
               

               
Conread position:
               
136-346
               

               
Cow position:
               
chr11:79466407-79466187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
136-362
               

               
Cow position:
               
chr11:46427222-46427448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
47, 79
               

               
Conread position:
               
136-412
               

               
Cow position:
               
chr11:32398826-32398548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
37, 96
               

               
Conread position:
               
136-431
               

               
Cow position:
               
chr11:6194573-6194300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
31, 78
               

               
Conread position:
               
136-473
               

               
Cow position:
               
chr11:6633911-6633562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 264
               

               
Conread position:
               
136-496
               

               
Cow position:
               
chr11:70978550-70978907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
30, 80
               

               
Conread position:
               
136-537
               

               
Cow position:
               
chr11:36286889-36286489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 18
               

               
Conread position:
               
136-541
               

               
Cow position:
               
chr11:33286770-33287175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
62, 49
               

               
Conread position:
               
136-545
               

               
Cow position:
               
chr11:65762400-65762814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 16
               

               
Conread position:
               
136-562
               

               
Cow position:
               
chr11:11469472-11469868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 19
               

               
Conread position:
               
136-585
               

               
Cow position:
               
chr11:1848980-1849423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 36
               

               
Conread position:
               
136-603
               

               
Cow position:
               
chr11:84890542-84891027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 219
               

               
Conread position:
               
136-607
               

               
Cow position:
               
chr11:4207496-4207019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 25
               

               
Conread position:
               
136-613
               

               
Cow position:
               
chr11:55334104-55333622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 236
               

               
Conread position:
               
136-614
               

               
Cow position:
               
chr11:17859968-17860440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 125
               

               
Conread position:
               
136-614
               

               
Cow position:
               
chr11:43360602-43361087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 72
               

               
Conread position:
               
136-619
               

               
Cow position:
               
chr11:49149231-49148758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 66
               

               
Conread position:
               
136-626
               

               
Cow position:
               
chr11:52297038-52297523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 74
               

               
Conread position:
               
137-309
               

               
Cow position:
               
chr11:37042158-37041984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
29, 77
               

               
Conread position:
               
137-312
               

               
Cow position:
               
chr11:434676-434864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
45, 131
               

               
Conread position:
               
137-320
               

               
Cow position:
               
chr11:41278371-41278187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
32, 77
               

               
Conread position:
               
137-329
               

               
Cow position:
               
chr11:36300400-36300585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
45, 73
               

               
Conread position:
               
137-332
               

               
Cow position:
               
chr11:47110440-47110242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
36, 159
               

               
Conread position:
               
137-360
               

               
Cow position:
               
chr11:71345131-71345362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
13, 55
               

               
Conread position:
               
137-364
               

               
Cow position:
               
chr11:72292745-72292509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
32, 108
               

               
Conread position:
               
137-370
               

               
Cow position:
               
chr11:1932304-1932538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
30, 71
               

               
Conread position:
               
137-413
               

               
Cow position:
               
chr11:3715423-3715146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
45, 91
               

               
Conread position:
               
137-443
               

               
Cow position:
               
chr11:375643-375335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
15, 60
               

               
Conread position:
               
137-462
               

               
Cow position:
               
chr11:81167847-81168169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
32, 77
               

               
Conread position:
               
137-463
               

               
Cow position:
               
chr11:50472502-50472177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
32, 77
               

               
Conread position:
               
137-493
               

               
Cow position:
               
chr11:68770547-68770191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
113, 53
               

               
Conread position:
               
137-495
               

               
Cow position:
               
chr11:16906847-16907214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 187
               

               
Conread position:
               
137-519
               

               
Cow position:
               
chr11:13592923-13592542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 77
               

               
Conread position:
               
137-529
               

               
Cow position:
               
chr11:68913327-68912941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 78
               

               
Conread position:
               
137-558
               

               
Cow position:
               
chr11:28367895-28367471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
32, 82
               

               
Conread position:
               
137-570
               

               
Cow position:
               
chr11:82940446-82940860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 32
               

               
Conread position:
               
137-579
               

               
Cow position:
               
chr11:18706634-18707065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 159
               

               
Conread position:
               
137-580
               

               
Cow position:
               
chr11:35153636-35154080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 58
               

               
Conread position:
               
137-595
               

               
Cow position:
               
chr11:77758577-77759027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 60
               

               
Conread position:
               
137-601
               

               
Cow position:
               
chr11:26535968-26535502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 72
               

               
Conread position:
               
137-603
               

               
Cow position:
               
chr11:6233694-6234154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 82
               

               
Conread position:
               
137-603
               

               
Cow position:
               
chr11:51687552-51688001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 39
               

               
Conread position:
               
137-603
               

               
Cow position:
               
chr11:65157221-65157683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 77
               

               
Conread position:
               
137-607
               

               
Cow position:
               
chr11:50152629-50153097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 85
               

               
Conread position:
               
137-614
               

               
Cow position:
               
chr11:64029083-64029542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 77
               

               
Conread position:
               
137-615
               

               
Cow position:
               
chr11:41985864-41986331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 76
               

               
Conread position:
               
137-616
               

               
Cow position:
               
chr11:38194361-38193863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 397
               

               
Conread position:
               
137-616
               

               
Cow position:
               
chr11:48932405-48932871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 117
               

               
Conread position:
               
137-618
               

               
Cow position:
               
chr11:35580445-35579965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 77
               

               
Conread position:
               
137-623
               

               
Cow position:
               
chr11:67600962-67600472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 103
               

               
Conread position:
               
138-333
               

               
Cow position:
               
chr11:18119685-18119490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
31, 75
               

               
Conread position:
               
138-350
               

               
Cow position:
               
chr11:30842842-30843047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
33, 72
               

               
Conread position:
               
138-352
               

               
Cow position:
               
chr11:30894820-30895034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
36, 76
               

               
Conread position:
               
138-355
               

               
Cow position:
               
chr11:6395936-6395722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
44, 31
               

               
Conread position:
               
138-365
               

               
Cow position:
               
chr11:15382312-15382548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
138-381
               

               
Cow position:
               
chr11:35351850-35352099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
32, 159
               

               
Conread position:
               
138-420
               

               
Cow position:
               
chr11:53817038-53816762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
29, 76
               

               
Conread position:
               
138-459
               

               
Cow position:
               
chr11:62789310-62788993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
29, 74
               

               
Conread position:
               
138-462
               

               
Cow position:
               
chr11:69307713-69307362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
29, 303
               

               
Conread position:
               
138-463
               

               
Cow position:
               
chr11:67615069-67615382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 70
               

               
Conread position:
               
138-475
               

               
Cow position:
               
chr11:70251097-70250774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
29, 74
               

               
Conread position:
               
138-479
               

               
Cow position:
               
chr11:5201463-5201805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
33, 105
               

               
Conread position:
               
138-489
               

               
Cow position:
               
chr11:48296208-48295867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 73
               

               
Conread position:
               
138-499
               

               
Cow position:
               
chr11:30830440-30830791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 27
               

               
Conread position:
               
138-506
               

               
Cow position:
               
chr11:64009908-64009535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
31, 11
               

               
Conread position:
               
138-521
               

               
Cow position:
               
chr11:41215916-41215550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 75
               

               
Conread position:
               
138-540
               

               
Cow position:
               
chr11:5486199-5485795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
31, 65
               

               
Conread position:
               
138-607
               

               
Cow position:
               
chr11:78380886-78381322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 71
               

               
Conread position:
               
138-614
               

               
Cow position:
               
chr11:42291657-42292122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 76
               

               
Conread position:
               
138-622
               

               
Cow position:
               
chr11:75479840-75480323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 11
               

               
Conread position:
               
138-623
               

               
Cow position:
               
chr11:46580531-46580071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 35
               

               
Conread position:
               
139-337
               

               
Cow position:
               
chr11:42084491-42084691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
26, 70
               

               
Conread position:
               
139-410
               

               
Cow position:
               
chr11:33409084-33409347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
43, 86
               

               
Conread position:
               
139-521
               

               
Cow position:
               
chr11:2874584-2874192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
28, 119
               

               
Conread position:
               
139-612
               

               
Cow position:
               
chr11:6594047-6594532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
30, 125
               

               
Conread position:
               
139-612
               

               
Cow position:
               
chr11:42835771-42836247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 36
               

               
Conread position:
               
140-289
               

               
Cow position:
               
chr11:9691190-9691038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
140-359
               

               
Cow position:
               
chr11:29786312-29786536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
29, 84
               

               
Conread position:
               
140-483
               

               
Cow position:
               
chr11:71390393-71390723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 39
               

               
Conread position:
               
140-606
               

               
Cow position:
               
chr11:45646416-45646869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 21
               

               
Conread position:
               
141-597
               

               
Cow position:
               
chr11:19247025-19247465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 72
               

               
Conread position:
               
141-612
               

               
Cow position:
               
chr11:46747679-46748153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 73
               

               
Conread position:
               
142-385
               

               
Cow position:
               
chr11:11533756-11533993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
152, 34
               

               
Conread position:
               
142-407
               

               
Cow position:
               
chr11:41313483-41313740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
28, 68
               

               
Conread position:
               
142-416
               

               
Cow position:
               
chr11:4199453-4199180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
23, 72
               

               
Conread position:
               
142-421
               

               
Cow position:
               
chr11:24599220-24599487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
40, 10
               

               
Conread position:
               
142-421
               

               
Cow position:
               
chr11:42159883-42160158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
27, 69
               

               
Conread position:
               
142-425
               

               
Cow position:
               
chr11:46999165-46998883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
31, 155
               

               
Conread position:
               
142-425
               

               
Cow position:
               
chr11:80412830-80413113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
27, 89
               

               
Conread position:
               
142-495
               

               
Cow position:
               
chr11:30209644-30209992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
27, 70
               

               
Conread position:
               
142-516
               

               
Cow position:
               
chr11:68112080-68112453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
31, 76
               

               
Conread position:
               
142-614
               

               
Cow position:
               
chr11:58990690-58990224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 161
               

               
Conread position:
               
142-623
               

               
Cow position:
               
chr11:21843960-21844428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 73
               

               
Conread position:
               
144-291
               

               
Cow position:
               
chr11:30597212-30597059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
144-321
               

               
Cow position:
               
chr11:4436938-4436748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
144-425
               

               
Cow position:
               
chr11:18910706-18910979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
7, 68
               

               
Conread position:
               
144-585
               

               
Cow position:
               
chr11:45872132-45872576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 71
               

               
Conread position:
               
144-604
               

               
Cow position:
               
chr11:17036355-17036828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 67
               

               
Conread position:
               
146-444
               

               
Cow position:
               
chr11:26274791-26275078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
21, 52
               

               
Conread position:
               
146-583
               

               
Cow position:
               
chr11:2907359-2907781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 65
               

               
Conread position:
               
146-661
               

               
Cow position:
               
chr11:13042973-13043476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 69
               

               
Conread position:
               
147-333
               

               
Cow position:
               
chr11:60486242-60486430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
21, 31
               

               
Conread position:
               
147-399
               

               
Cow position:
               
chr11:35109366-35109611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
35, 64
               

               
Conread position:
               
149-400
               

               
Cow position:
               
chr11:36920406-36920656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
33, 26
               

               
Conread position:
               
149-463
               

               
Cow position:
               
chr11:5211554-5211878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
18, 115
               

               
Conread position:
               
149-614
               

               
Cow position:
               
chr11:71868433-71868890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 49
               

               
Conread position:
               
149-623
               

               
Cow position:
               
chr11:48474881-48474413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 216
               

               
Conread position:
               
150-340
               

               
Cow position:
               
chr11:35149573-35149380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
19, 80
               

               
Conread position:
               
150-499
               

               
Cow position:
               
chr11:28993577-28993904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 68
               

               
Conread position:
               
150-612
               

               
Cow position:
               
chr11:36981736-36981283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 63
               

               
Conread position:
               
151-463
               

               
Cow position:
               
chr11:47772212-47772531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 217
               

               
Conread position:
               
155-360
               

               
Cow position:
               
chr11:44017150-44016936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
20, 109
               

               
Conread position:
               
155-365
               

               
Cow position:
               
chr11:5249350-5249570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
14, 165
               

               
Conread position:
               
155-479
               

               
Cow position:
               
chr11:63435688-63435362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 59
               

               
Conread position:
               
155-544
               

               
Cow position:
               
chr11:34144753-34145133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 140
               

               
Conread position:
               
155-582
               

               
Cow position:
               
chr11:34121361-34120944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 56
               

               
Conread position:
               
155-614
               

               
Cow position:
               
chr11:24602123-24601680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 56
               

               
Conread position:
               
155-614
               

               
Cow position:
               
chr11:32199109-32198654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
13, 63
               

               
Conread position:
               
155-616
               

               
Cow position:
               
chr11:83066658-83066207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 63
               

               
Conread position:
               
160-365
               

               
Cow position:
               
chr11:26632854-26633057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
23, 51
               

               
Conread position:
               
165-337
               

               
Cow position:
               
chr11:18791910-18792083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
17, 63
               

               
Conread position:
               
165-343
               

               
Cow position:
               
chr11:8683925-8684101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
17, 46
               

               
Conread position:
               
165-361
               

               
Cow position:
               
chr11:34136394-34136204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
17, 37
               

               
Conread position:
               
165-366
               

               
Cow position:
               
chr11:58927726-58927539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
17, 46
               

               
Conread position:
               
165-412
               

               
Cow position:
               
chr11:82289741-82289486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
17, 131
               

               
Conread position:
               
165-481
               

               
Cow position:
               
chr11:39499508-39499201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
17, 44
               

               
Conread position:
               
165-497
               

               
Cow position:
               
chr11:8544863-8545186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 31
               

               
Conread position:
               
165-521
               

               
Cow position:
               
chr11:63202094-63202433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
17, 46
               

               
Conread position:
               
165-623
               

               
Cow position:
               
chr11:9221569-9222021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 59
               

               
Conread position:
               
165-636
               

               
Cow position:
               
chr11:35363650-35363186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 137
               

               
Conread position:
               
166-403
               

               
Cow position:
               
chr11:31410728-31410963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
16, 45
               

               
Conread position:
               
169-486
               

               
Cow position:
               
chr11:17493632-17493316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 20
               

               
Conread position:
               
169-547
               

               
Cow position:
               
chr11:23586789-23586416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 13
               

               
Conread position:
               
172-499
               

               
Cow position:
               
chr11:63909509-63909833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 127
               

               
Conread position:
               
174-603
               

               
Cow position:
               
chr11:18243801-18244217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 37
               

               
Conread position:
               
175-408
               

               
Cow position:
               
chr11:22747185-22747414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
116, 18
               

               
Conread position:
               
175-503
               

               
Cow position:
               
chr11:38670833-38670503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 36
               

               
Conread position:
               
177-407
               

               
Cow position:
               
chr11:53279567-53279798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
50, 35
               

               
Conread position:
               
180-608
               

               
Cow position:
               
chr11:25331604-25332009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
16, 54
               

               
Conread position:
               
181-446
               

               
Cow position:
               
chr11:14466343-14466610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
22, 10
               

               
Conread position:
               
181-478
               

               
Cow position:
               
chr11:70277970-70278263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 167
               

               
Conread position:
               
181-578
               

               
Cow position:
               
chr11:2832545-2832921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
43, 12
               

               
Conread position:
               
181-613
               

               
Cow position:
               
chr11:59903028-59902605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 29
               

               
Conread position:
               
181-616
               

               
Cow position:
               
chr11:44575602-44576025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 77
               

               
Conread position:
               
185-412
               

               
Cow position:
               
chr11:35926776-35926995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
186-337
               

               
Cow position:
               
chr11:74720857-74720709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
105, 11
               

               
Conread position:
               
186-612
               

               
Cow position:
               
chr11:80761240-80761664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 71
               

               
Conread position:
               
186-615
               

               
Cow position:
               
chr11:44642157-44642573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 54
               

               
Conread position:
               
188-560
               

               
Cow position:
               
chr11:32436467-32436096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 22
               

               
Conread position:
               
188-614
               

               
Cow position:
               
chr11:56518176-56518599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 37
               

               
Conread position:
               
189-360
               

               
Cow position:
               
chr11:18608109-18608276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
60, 20
               

               
Conread position:
               
193-537
               

               
Cow position:
               
chr11:61958617-61958959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 32
               

               
Conread position:
               
193-603
               

               
Cow position:
               
chr11:2092457-2092072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 57
               

               
Conread position:
               
193-612
               

               
Cow position:
               
chr11:21497653-21497256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
25, 15
               

               
Conread position:
               
193-614
               

               
Cow position:
               
chr11:34963203-34962776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 113
               

               
Conread position:
               
194-584
               

               
Cow position:
               
chr11:33311108-33310714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 208
               

               
Conread position:
               
194-606
               

               
Cow position:
               
chr11:12111332-12111746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 13
               

               
Conread position:
               
194-607
               

               
Cow position:
               
chr11:18572927-18572524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 16
               

               
Conread position:
               
194-615
               

               
Cow position:
               
chr11:8840615-8841028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 43
               

               
Conread position:
               
196-421
               

               
Cow position:
               
chr11:64406350-64406128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
96, 13
               

               
Conread position:
               
197-358
               

               
Cow position:
               
chr11:58938616-58938781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
197-384
               

               
Cow position:
               
chr11:56290637-56290446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
197-402
               

               
Cow position:
               
chr11:70826074-70825872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
94, 165
               

               
Conread position:
               
197-413
               

               
Cow position:
               
chr11:66518611-66518400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
31, 67
               

               
Conread position:
               
197-435
               

               
Cow position:
               
chr11:18587469-18587719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
197-445
               

               
Cow position:
               
chr11:63919930-63920170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
94, 17
               

               
Conread position:
               
197-451
               

               
Cow position:
               
chr11:83033112-83033363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
28, 67
               

               
Conread position:
               
197-487
               

               
Cow position:
               
chr11:63917351-63917628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
94, 76
               

               
Conread position:
               
197-511
               

               
Cow position:
               
chr11:15373965-15373664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
49, 59
               

               
Conread position:
               
197-537
               

               
Cow position:
               
chr11:70114598-70114263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
45, 71
               

               
Conread position:
               
197-552
               

               
Cow position:
               
chr11:36238904-36238557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 96
               

               
Conread position:
               
197-571
               

               
Cow position:
               
chr11:36849045-36848688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
27, 130
               

               
Conread position:
               
197-596
               

               
Cow position:
               
chr11:34032075-34032464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 19
               

               
Conread position:
               
197-603
               

               
Cow position:
               
chr11:30879795-30879403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 144
               

               
Conread position:
               
197-610
               

               
Cow position:
               
chr11:36658697-36659097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 45
               

               
Conread position:
               
197-623
               

               
Cow position:
               
chr11:40478726-40479167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 171
               

               
Conread position:
               
197-623
               

               
Cow position:
               
chr11:43430328-43430742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 112
               

               
Conread position:
               
197-625
               

               
Cow position:
               
chr11:37160924-37160493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
18, 165
               

               
Conread position:
               
198-462
               

               
Cow position:
               
chr11:61348997-61348751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
94, 11
               

               
Conread position:
               
198-496
               

               
Cow position:
               
chr11:65842950-65843267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
88, 184
               

               
Conread position:
               
198-615
               

               
Cow position:
               
chr11:33753781-33754182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 69
               

               
Conread position:
               
199-487
               

               
Cow position:
               
chr11:63499200-63499487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
10, 42
               

               
Conread position:
               
200-369
               

               
Cow position:
               
chr11:19606701-19606528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
200-390
               

               
Cow position:
               
chr11:31885844-31885650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
91, 15
               

               
Conread position:
               
200-476
               

               
Cow position:
               
chr11:69076036-69075756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
9, 130
               

               
Conread position:
               
200-501
               

               
Cow position:
               
chr11:71501010-71501312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
92, 15
               

               
Conread position:
               
200-506
               

               
Cow position:
               
chr11:40573213-40573516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 111
               

               
Conread position:
               
200-507
               

               
Cow position:
               
chr11:30955123-30954815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 164
               

               
Conread position:
               
200-544
               

               
Cow position:
               
chr11:42043874-42044207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 55
               

               
Conread position:
               
200-612
               

               
Cow position:
               
chr11:48272323-48271911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 174
               

               
Conread position:
               
200-615
               

               
Cow position:
               
chr11:73512319-73512707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 15
               

               
Conread position:
               
201-425
               

               
Cow position:
               
chr11:35573370-35573590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
107, 90
               

               
Conread position:
               
201-596
               

               
Cow position:
               
chr11:5789778-5790184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 55
               

               
Conread position:
               
201-612
               

               
Cow position:
               
chr11:71168471-71168862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 13
               

               
Conread position:
               
201-613
               

               
Cow position:
               
chr11:59702611-59702199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 26
               

               
Conread position:
               
201-614
               

               
Cow position:
               
chr11:28644209-28643795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 221
               

               
Conread position:
               
201-615
               

               
Cow position:
               
chr11:18086226-18086625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
254, 91
               

               
Conread position:
               
201-619
               

               
Cow position:
               
chr11:23137933-23138353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 23
               

               
Conread position:
               
202-362
               

               
Cow position:
               
chr11:30272819-30272971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
202-457
               

               
Cow position:
               
chr11:71807445-71807704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
14, 134
               

               
Conread position:
               
202-585
               

               
Cow position:
               
chr11:77128779-77128411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 25
               

               
Conread position:
               
202-602
               

               
Cow position:
               
chr11:63847965-63847577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 37
               

               
Conread position:
               
202-612
               

               
Cow position:
               
chr11:62150773-62151166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 88
               

               
Conread position:
               
203-437
               

               
Cow position:
               
chr11:72333710-72333479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
11, 146
               

               
Conread position:
               
203-526
               

               
Cow position:
               
chr11:66424760-66425086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
89, 59
               

               
Conread position:
               
203-607
               

               
Cow position:
               
chr11:54334448-54334055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 160
               

               
Conread position:
               
204-584
               

               
Cow position:
               
chr11:68904957-68905319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
16, 39
               

               
Conread position:
               
204-609
               

               
Cow position:
               
chr11:70609917-70609506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 54
               

               
Conread position:
               
204-614
               

               
Cow position:
               
chr11:25387186-25386784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 28
               

               
Conread position:
               
205-353
               

               
Cow position:
               
chr11:63382073-63382222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
86, 0
               
UCSC Genome Browser

               
Conread position:
               
205-616
               

               
Cow position:
               
chr11:1070973-1071380 (view  custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 178
               
UCSC Genome Browser

               
               
               
Conread position:
206-610

               
               
               
Cow position:
chr11:76114761-76114372 (view  custom track)

               
               
               
Alignm length:
409

               
               
               
Alignm identity:
318

               
               
               
Alignm E-value:
0

               
               
               
Alignm gaps (pig, cow):
16, 65
UCSC Genome Browser

               
               
               
Conread position:
206-614

               
               
               
Cow position:
chr11:37975050-37974639 (view  custom track)

               
               
               
Alignm length:
418

               
               
               
Alignm identity:
276

               
               
               
Alignm E-value:
1.99965e-42

               
               
               
Alignm gaps (pig, cow):
85, 48

               
               
               Conread position:207-638
               
               
               Cow position:chr11:14308754-14308328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 49

               
               
               Conread position:208-367
               
               
               Cow position:chr11:34692970-34692806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):29, 84

               
               
               Conread position:208-603
               
               
               Cow position:chr11:69119409-69119024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 175

               
               
               Conread position:208-606
               
               
               Cow position:chr11:83230286-83230663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 118

               
               
               Conread position:208-619
               
               
               Cow position:chr11:29946800-29947216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 16

               
               
               Conread position:210-590
               
               
               Cow position:chr11:22499252-22499613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 98

               
               
               Conread position:211-369
               
               
               Cow position:chr11:38211757-38211598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:211-371
               
               
               Cow position:chr11:39250082-39249923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):81, 16

               
               
               Conread position:211-459
               
               
               Cow position:chr11:7460502-7460750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):22, 47

               
               
               Conread position:211-460
               
               
               Cow position:chr11:48660046-48659795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):33, 45

               
               
               Conread position:211-481
               
               
               Cow position:chr11:21852192-21852461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:198
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):89, 16

               
               
               Conread position:211-481
               
               
               Cow position:chr11:51729398-51729131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 154

               
               
               Conread position:211-503
               
               
               Cow position:chr11:83687322-83687607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:204
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):81, 153

               
               
               Conread position:211-546
               
               
               Cow position:chr11:77546524-77546200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:238
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):81, 22

               
               
               Conread position:211-571
               
               
               Cow position:chr11:30925266-30924909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 52

               
               
               Conread position:211-605
               
               
               Cow position:chr11:65409047-65409435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 25

               
               
               Conread position:211-607
               
               
               Cow position:chr11:42083577-42083204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 16

               
               
               Conread position:211-612
               
               
               Cow position:chr11:3393098-3393496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 68

               
               
               Conread position:211-614
               
               
               Cow position:chr11:67747391-67746991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 41

               
               
               Conread position:211-622
               
               
               Cow position:chr11:7590300-7589896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 95

               
               
               Conread position:211-669
               
               
               Cow position:chr11:17083199-17083639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 21

               
               
               Conread position:212-361
               
               
               Cow position:chr11:48063690-48063840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:212-499
               
               
               Cow position:chr11:85294352-85294072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):75, 144

               
               
               Conread position:212-501
               
               
               Cow position:chr11:77118810-77118534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):34, 44

               
               
               Conread position:212-614
               
               
               Cow position:chr11:38639222-38638836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 78

               
               
               Conread position:213-475
               
               
               Cow position:chr11:84228609-84228865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):78, 19

               
               
               Conread position:213-606
               
               
               Cow position:chr11:27939592-27939208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 45

               
               
               Conread position:214-350
               
               
               Cow position:chr11:62376365-62376501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):77, 71

               
               
               Conread position:214-414
               
               
               Cow position:chr11:4652864-4653068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:161
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:214-424
               
               
               Cow position:chr11:32690862-32691064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):77, 149

               
               
               Conread position:214-562
               
               
               Cow position:chr11:4662939-4663273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 27

               
               
               Conread position:214-601
               
               
               Cow position:chr11:44234464-44234085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 162

               
               
               Conread position:214-603
               
               
               Cow position:chr11:377534-377926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 13

               
               
               Conread position:214-603
               
               
               Cow position:chr11:35684393-35684774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 9

               
               
               Conread position:214-614
               
               
               Cow position:chr11:8988123-8988516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):198, 27

               
               
               Conread position:214-615
               
               
               Cow position:chr11:8525007-8525393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:214-629
               
               
               Cow position:chr11:43898247-43897835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 112

               
               
               Conread position:214-659
               
               
               Cow position:chr11:23232411-23232845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 65

               
               
               Conread position:215-404
               
               
               Cow position:chr11:79018951-79019140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:152
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):76, 160

               
               
               Conread position:215-414
               
               
               Cow position:chr11:35803244-35803043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):61, 79

               
               
               Conread position:215-497
               
               
               Cow position:chr11:38577671-38577948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:212
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):77, 87

               
               
               Conread position:215-503
               
               
               Cow position:chr11:26845487-26845760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):85, 26

               
               
               Conread position:215-556
               
               
               Cow position:chr11:82107794-82108116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:245
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):108, 70

               
               
               Conread position:215-596
               
               
               Cow position:chr11:63482323-63482694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 18

               
               
               Conread position:215-609
               
               
               Cow position:chr11:55761973-55761598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 24

               
               
               Conread position:215-613
               
               
               Cow position:chr11:70838182-70838588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 48

               
               
               Conread position:215-614
               
               
               Cow position:chr11:20602334-20601953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 63

               
               
               Conread position:215-627
               
               
               Cow position:chr11:34467674-34467302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 97

               
               
               Conread position:216-356
               
               
               Cow position:chr11:62609711-62609570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:106
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:216-371
               
               
               Cow position:chr11:18447384-18447543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:216-409
               
               
               Cow position:chr11:27565437-27565250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):17, 26

               
               
               Conread position:216-420
               
               
               Cow position:chr11:30211011-30210810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):29, 11

               
               
               Conread position:216-579
               
               
               Cow position:chr11:77319521-77319172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 169

               
               
               Conread position:216-601
               
               
               Cow position:chr11:10388518-10388870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:278
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):242, 48

               
               
               Conread position:216-604
               
               
               Cow position:chr11:62155745-62155354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 316

               
               
               Conread position:216-614
               
               
               Cow position:chr11:5031670-5032063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 11

               
               
               Conread position:216-614
               
               
               Cow position:chr11:44636648-44637047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 18

               
               
               Conread position:216-615
               
               
               Cow position:chr11:80530465-80530083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):247, 76

               
               
               Conread position:216-626
               
               
               Cow position:chr11:44036828-44036416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 77

               
               
               Conread position:217-398
               
               
               Cow position:chr11:51195977-51196153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):74, 118

               
               
               Conread position:217-412
               
               
               Cow position:chr11:62778547-62778358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):74, 102

               
               
               Conread position:217-447
               
               
               Cow position:chr11:33345551-33345320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:172
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:217-512
               
               
               Cow position:chr11:42296514-42296804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:211
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):75, 144

               
               
               Conread position:217-521
               
               
               Cow position:chr11:79960679-79960985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):28, 38

               
               
               Conread position:217-575
               
               
               Cow position:chr11:2917481-2917827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 41

               
               
               Conread position:217-590
               
               
               Cow position:chr11:70836271-70836630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 45

               
               
               Conread position:217-597
               
               
               Cow position:chr11:62663129-62663502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:272
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):75, 89

               
               
               Conread position:217-601
               
               
               Cow position:chr11:59873033-59872653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 10

               
               
               Conread position:217-613
               
               
               Cow position:chr11:53147426-53147825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 97

               
               
               Conread position:217-616
               
               
               Cow position:chr11:48650893-48650506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:270
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):20, 39

               
               
               Conread position:218-416
               
               
               Cow position:chr11:67912047-67912245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:218-453
               
               
               Cow position:chr11:28395581-28395340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:218-497
               
               
               Cow position:chr11:53512188-53511908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):30, 55

               
               
               Conread position:218-514
               
               
               Cow position:chr11:70086437-70086133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 62

               
               
               Conread position:218-593
               
               
               Cow position:chr11:36799203-36799561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 37

               
               
               Conread position:218-627
               
               
               Cow position:chr11:73353956-73354356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 9

               
               
               Conread position:219-414
               
               
               Cow position:chr11:41603583-41603780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):73, 41

               
               
               Conread position:219-446
               
               
               Cow position:chr11:31506952-31506722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):13, 23

               
               
               Conread position:219-503
               
               
               Cow position:chr11:71341361-71341631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):73, 149

               
               
               Conread position:219-605
               
               
               Cow position:chr11:45631662-45632042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 105

               
               
               Conread position:219-614
               
               
               Cow position:chr11:3769205-3769576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:276
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):27, 40

               
               
               Conread position:220-581
               
               
               Cow position:chr11:16342124-16342495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 250

               
               
               Conread position:220-602
               
               
               Cow position:chr11:30355161-30354793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 134

               
               
               Conread position:220-607
               
               
               Cow position:chr11:64089995-64090366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 21

               
               
               Conread position:220-614
               
               
               Cow position:chr11:41809390-41809763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 142

               
               
               Conread position:220-619
               
               
               Cow position:chr11:56654662-56654257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 40

               
               
               Conread position:221-415
               
               
               Cow position:chr11:69652681-69652877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):112, 15

               
               
               Conread position:221-586
               
               
               Cow position:chr11:3234177-3233821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 141

               
               
               Conread position:222-611
               
               
               Cow position:chr11:39115598-39115210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 83

               
               
               Conread position:222-616
               
               
               Cow position:chr11:1362367-1362770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 298

               
               
               Conread position:223-457
               
               
               Cow position:chr11:30787323-30787083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):67, 196

               
               
               Conread position:223-597
               
               
               Cow position:chr11:11232359-11232724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 16

               
               
               Conread position:223-603
               
               
               Cow position:chr11:8428609-8428219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 10

               
               
               Conread position:223-611
               
               
               Cow position:chr11:30934516-30934146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):228, 69

               
               
               Conread position:223-619
               
               
               Cow position:chr11:42359219-42358837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 205

               
               
               Conread position:224-414
               
               
               Cow position:chr11:19586558-19586364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:224-456
               
               
               Cow position:chr11:7414777-7415002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):68, 86

               
               
               Conread position:224-462
               
               
               Cow position:chr11:46953046-46952811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):68, 136

               
               
               Conread position:224-491
               
               
               Cow position:chr11:16540962-16540695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):13, 133

               
               
               Conread position:224-586
               
               
               Cow position:chr11:47545229-47544869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 12

               
               
               Conread position:224-603
               
               
               Cow position:chr11:58588443-58588068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):354, 77

               
               
               Conread position:224-648
               
               
               Cow position:chr11:8147800-8148208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 129

               
               
               Conread position:225-481
               
               
               Cow position:chr11:13075714-13075948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:225-597
               
               
               Cow position:chr11:34113363-34113004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 147

               
               
               Conread position:225-613
               
               
               Cow position:chr11:23128442-23128827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 255

               
               
               Conread position:226-414
               
               
               Cow position:chr11:55203365-55203550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):66, 15

               
               
               Conread position:227-385
               
               
               Cow position:chr11:84977262-84977423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:227-402
               
               
               Cow position:chr11:18785782-18785950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):142, 64

               
               
               Conread position:227-420
               
               
               Cow position:chr11:9368921-9368730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):41, 66

               
               
               Conread position:227-421
               
               
               Cow position:chr11:54133991-54134169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):64, 28

               
               
               Conread position:227-448
               
               
               Cow position:chr11:6194301-6194081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):65, 137

               
               
               Conread position:227-463
               
               
               Cow position:chr11:56734724-56734490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):65, 9

               
               
               Conread position:227-463
               
               
               Cow position:chr11:65767295-65767058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):65, 156

               
               
               Conread position:227-473
               
               
               Cow position:chr11:86720322-86720561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):19, 45

               
               
               Conread position:227-499
               
               
               Cow position:chr11:16232839-16233111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):71, 175

               
               
               Conread position:227-509
               
               
               Cow position:chr11:1157740-1157459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):10, 80

               
               
               Conread position:227-578
               
               
               Cow position:chr11:64905093-64904745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 29

               
               
               Conread position:227-601
               
               
               Cow position:chr11:16001021-16000655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:251
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):22, 29

               
               
               Conread position:227-608
               
               
               Cow position:chr11:50951650-50951270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 28

               
               
               Conread position:227-614
               
               
               Cow position:chr11:63156826-63157200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:266
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):10, 19

               
               
               Conread position:227-623
               
               
               Cow position:chr11:8828536-8828924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 30

               
               
               Conread position:227-623
               
               
               Cow position:chr11:20491664-20491278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:271
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):10, 30

               
               
               Conread position:228-607
               
               
               Cow position:chr11:76606767-76606410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:262
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):64, 134

               
               
               Conread position:228-617
               
               
               Cow position:chr11:32438856-32439239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:260
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):18, 29

               
               
               Conread position:229-634
               
               
               Cow position:chr11:50778461-50778063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 115

               
               
               Conread position:230-470
               
               
               Cow position:chr11:67246878-67246646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:232-423
               
               
               Cow position:chr11:63687529-63687713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):58, 132

               
               
               Conread position:233-404
               
               
               Cow position:chr11:28168333-28168505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):61, 139

               
               
               Conread position:233-444
               
               
               Cow position:chr11:249392-249605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:233-476
               
               
               Cow position:chr11:18851997-18851766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:169
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):59, 48

               
               
               Conread position:233-486
               
               
               Cow position:chr11:15958396-15958138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):134, 23

               
               
               Conread position:233-572
               
               
               Cow position:chr11:47899358-47899032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 126

               
               
               Conread position:233-588
               
               
               Cow position:chr11:36647433-36647100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:233-603
               
               
               Cow position:chr11:33341055-33341421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 229

               
               
               Conread position:233-603
               
               
               Cow position:chr11:64044323-64043973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 135

               
               
               Conread position:233-607
               
               
               Cow position:chr11:80819915-80820278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 64

               
               
               Conread position:233-609
               
               
               Cow position:chr11:63469965-63469602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 141

               
               
               Conread position:235-623
               
               
               Cow position:chr11:42519820-42519449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:265
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):14, 22

               
               
               Conread position:236-476
               
               
               Cow position:chr11:48306260-48306496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):49, 62

               
               
               Conread position:236-545
               
               
               Cow position:chr11:69810990-69810686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 185

               
               
               Conread position:236-602
               
               
               Cow position:chr11:34829699-34830054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 55

               
               
               Conread position:236-609
               
               
               Cow position:chr11:61427679-61427333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:259
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):13, 20

               
               
               Conread position:236-612
               
               
               Cow position:chr11:3833277-3833632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):250, 35

               
               
               Conread position:236-614
               
               
               Cow position:chr11:36987036-36986675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 114

               
               
               Conread position:236-616
               
               
               Cow position:chr11:49934644-49935030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 285

               
               
               Conread position:236-623
               
               
               Cow position:chr11:33527139-33526779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:270
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):56, 128

               
               
               Conread position:236-661
               
               
               Cow position:chr11:81162346-81162755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 204

               
               
               Conread position:237-375
               
               
               Cow position:chr11:34106584-34106726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:238-495
               
               
               Cow position:chr11:21438293-21438044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:191
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):54, 126

               
               
               Conread position:239-475
               
               
               Cow position:chr11:52983759-52983525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:185
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):53, 123

               
               
               Conread position:239-490
               
               
               Cow position:chr11:35775421-35775172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):64, 108

               
               
               Conread position:240-670
               
               
               Cow position:chr11:65159371-65159794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:294
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):27, 15

               
               
               Conread position:241-493
               
               
               Cow position:chr11:75874673-75874921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 148

               
               
               Conread position:241-601
               
               
               Cow position:chr11:64638444-64638797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 72

               
               
               Conread position:245-623
               
               
               Cow position:chr11:62880554-62880920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 46

               
               
               Conread position:245-642
               
               
               Cow position:chr11:45897972-45898372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 123

               
               
               Conread position:246-623
               
               
               Cow position:chr11:38009751-38010107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:255
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):62, 9

               
               
               Conread position:252-452
               
               
               Cow position:chr11:69392633-69392428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):40, 100

               
               
               Conread position:252-601
               
               
               Cow position:chr11:30911933-30912265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:254-534
               
               
               Cow position:chr11:49231942-49231667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:203
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):38, 110

               
               
               Conread position:254-603
               
               
               Cow position:chr11:51043864-51044212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 19

               
               
               Conread position:254-607
               
               
               Cow position:chr11:77766524-77766879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 158

               
               
               Conread position:255-431
               
               
               Cow position:chr11:75965584-75965757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):37, 113

               
               
               Conread position:255-496
               
               
               Cow position:chr11:41175881-41176122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 109

               
               
               Conread position:255-501
               
               
               Cow position:chr11:60143234-60143476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):110, 122

               
               
               Conread position:255-513
               
               
               Cow position:chr11:67550310-67550560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):37, 100

               
               
               Conread position:255-590
               
               
               Cow position:chr11:17192213-17192544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):11, 51

               
               
               Conread position:255-611
               
               
               Cow position:chr11:70273374-70273018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 109

               
               
               Conread position:255-628
               
               
               Cow position:chr11:62019520-62019898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:260
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):11, 21

               
               
               Conread position:256-499
               
               
               Cow position:chr11:7395199-7394966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):199, 9

               
               
               Conread position:257-593
               
               
               Cow position:chr11:16261959-16262297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:237
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):35, 104

               
               
               Conread position:257-616
               
               
               Cow position:chr11:42002881-42003242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 81

               
               
               Conread position:258-536
               
               
               Cow position:chr11:16842919-16843214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:221
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):34, 210

               
               
               Conread position:258-546
               
               
               Cow position:chr11:61858838-61859118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 102

               
               
               Conread position:259-498
               
               
               Cow position:chr11:71009192-71008961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:188
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):106, 32

               
               
               Conread position:259-597
               
               
               Cow position:chr11:24937729-24937393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 197

               
               
               Conread position:259-628
               
               
               Cow position:chr11:70745467-70745833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:265
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):35, 107

               
               
               Conread position:262-433
               
               
               Cow position:chr11:46592526-46592357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):30, 19

               
               
               Conread position:262-580
               
               
               Cow position:chr11:3726347-3726033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:230
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):30, 10

               
               
               Conread position:263-516
               
               
               Cow position:chr11:7497587-7497837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):29, 69

               
               
               Conread position:263-542
               
               
               Cow position:chr11:38874342-38874617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 101

               
               
               Conread position:263-563
               
               
               Cow position:chr11:10686827-10687123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):121, 98

               
               
               Conread position:265-497
               
               
               Cow position:chr11:39118815-39118585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):30, 195

               
               
               Conread position:265-533
               
               
               Cow position:chr11:81913665-81913929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):26, 20

               
               
               Conread position:265-598
               
               
               Cow position:chr11:29916599-29916268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):27, 178

               
               
               Conread position:265-602
               
               
               Cow position:chr11:3780360-3780699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 177

               
               
               Conread position:265-603
               
               
               Cow position:chr11:18588528-18588856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 99

               
               
               Conread position:265-613
               
               
               Cow position:chr11:18371379-18371725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:247
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):34, 101

               
               
               Conread position:265-614
               
               
               Cow position:chr11:6835591-6835241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 55

               
               
               Conread position:265-614
               
               
               Cow position:chr11:32750168-32749821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):190, 26

               
               
               Conread position:265-614
               
               
               Cow position:chr11:33349643-33349988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 99

               
               
               Conread position:266-459
               
               
               Cow position:chr11:76653076-76652887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):26, 104

               
               
               Conread position:266-503
               
               
               Cow position:chr11:81611825-81611590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):41, 24

               
               
               Conread position:266-552
               
               
               Cow position:chr11:18340984-18341263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 60

               
               
               Conread position:266-606
               
               
               Cow position:chr11:32378244-32377909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 118

               
               
               Conread position:267-603
               
               
               Cow position:chr11:33293723-33294067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 100

               
               
               Conread position:267-614
               
               
               Cow position:chr11:66733885-66733549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:238
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):25, 135

               
               
               Conread position:267-614
               
               
               Cow position:chr11:80787851-80788197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:245
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):25, 97

               
               
               Conread position:267-615
               
               
               Cow position:chr11:70459611-70459287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:254
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):86, 25

               
               
               Conread position:267-626
               
               
               Cow position:chr11:4323414-4323067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 119

               
               
               Conread position:269-458
               
               
               Cow position:chr11:53462996-53462809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):23, 95

               
               
               Conread position:271-425
               
               
               Cow position:chr11:12368752-12368595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):30, 20

               
               
               Conread position:271-598
               
               
               Cow position:chr11:30120610-30120931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 20

               
               
               Conread position:275-552
               
               
               Cow position:chr11:2509261-2509520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):17, 99

               
               
               Conread position:276-459
               
               
               Cow position:chr11:21399009-21398830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):18, 148

               
               
               Conread position:276-586
               
               
               Cow position:chr11:56728996-56728688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 87

               
               
               Conread position:276-603
               
               
               Cow position:chr11:26483758-26483444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 43

               
               
               Conread position:276-614
               
               
               Cow position:chr11:54856663-54856348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):16, 88

               
               
               Conread position:276-626
               
               
               Cow position:chr11:39163326-39162978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):16, 112

               
               
               Conread position:277-585
               
               
               Cow position:chr11:30597039-30596739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 215

               
               
               Conread position:278-454
               
               
               Cow position:chr11:485584-485761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):14, 117

               
               
               Conread position:279-612
               
               
               Cow position:chr11:66896754-66897084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):12, 97

               
               
               Conread position:280-548
               
               
               Cow position:chr11:83000487-83000752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):7, 14

               
               
               Conread position:282-582
               
               
               Cow position:chr11:42792932-42793230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 78

               
               
               Conread position:282-613
               
               
               Cow position:chr11:22931930-22932247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:247
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):10, 147

               
               
               Conread position:283-503
               
               
               Cow position:chr11:2811690-2811908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:174
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):9, 79

               
               
               Conread position:284-591
               
               
               Cow position:chr11:14094381-14094686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 100

               
               
               Conread position:284-608
               
               
               Cow position:chr11:48041994-48042342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 81

               
               
               Conread position:293-497
               
               
               Cow position:chr11:21427964-21428165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:163
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):162, 80

               
               
               Conread position:293-603
               
               
               Cow position:chr11:6154437-6154137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:293-605
               
               
               Cow position:chr11:8339377-8339682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 75

               
               
               Conread position:295-514
               
               
               Cow position:chr11:57170803-57171017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:295-614
               
               
               Cow position:chr11:71846324-71846635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:296-578
               
               
               Cow position:chr11:73478634-73478370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:205
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:296-603
               
               
               Cow position:chr11:37292885-37292581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):159, 70

               
               
               Conread position:297-612
               
               
               Cow position:chr11:50197408-50197729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 57

               
               
               Conread position:298-459
               
               
               Cow position:chr11:6101634-6101474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):131, 115

               
               
               Conread position:298-521
               
               
               Cow position:chr11:38071385-38071160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):64, 84

               
               
               Conread position:298-589
               
               
               Cow position:chr11:24585205-24584918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):87, 69

               
               
               Conread position:298-604
               
               
               Cow position:chr11:59155855-59156147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):64, 11

               
               
               Conread position:298-610
               
               
               Cow position:chr11:82232445-82232139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):21, 35

               
               
               Conread position:299-470
               
               
               Cow position:chr11:85703725-85703559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):156, 68

               
               
               Conread position:299-486
               
               
               Cow position:chr11:56349000-56349178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):164, 39

               
               
               Conread position:299-497
               
               
               Cow position:chr11:67207752-67207566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):152, 55

               
               
               Conread position:299-552
               
               
               Cow position:chr11:18591411-18591658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:299-578
               
               
               Cow position:chr11:36114179-36113905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):139, 62

               
               
               Conread position:299-601
               
               
               Cow position:chr11:11752494-11752792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:215
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):135, 56

               
               
               Conread position:299-603
               
               
               Cow position:chr11:21798952-21798676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):156, 22

               
               
               Conread position:299-603
               
               
               Cow position:chr11:27386316-27386615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 64

               
               
               Conread position:299-603
               
               
               Cow position:chr11:81174907-81174615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 24

               
               
               Conread position:299-612
               
               
               Cow position:chr11:60301938-60302242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 89

               
               
               Conread position:299-614
               
               
               Cow position:chr11:10076791-10076488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 68

               
               
               Conread position:299-614
               
               
               Cow position:chr11:17112610-17112913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 18

               
               
               Conread position:299-614
               
               
               Cow position:chr11:40485912-40486218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:221
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):56, 97

               
               
               Conread position:299-621
               
               
               Cow position:chr11:2309896-2309584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 77

               
               
               Conread position:299-622
               
               
               Cow position:chr11:18210325-18210643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:300-470
               
               
               Cow position:chr11:33824866-33825037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):70, 54

               
               
               Conread position:301-503
               
               
               Cow position:chr11:77683190-77682987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):65, 33

               
               
               Conread position:301-551
               
               
               Cow position:chr11:61246438-61246681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):159, 61

               
               
               Conread position:301-598
               
               
               Cow position:chr11:38810328-38810621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 26

               
               
               Conread position:302-512
               
               
               Cow position:chr11:67136408-67136628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):60, 83

               
               
               Conread position:302-596
               
               
               Cow position:chr11:83196517-83196231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:302-615
               
               
               Cow position:chr11:16251224-16251537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 187

               
               
               Conread position:303-617
               
               
               Cow position:chr11:37347497-37347186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 59

               
               
               Conread position:304-600
               
               
               Cow position:chr11:3175397-3175107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:216
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):56, 23

               
               
               Conread position:305-610
               
               
               Cow position:chr11:62979507-62979195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 217

               
               
               Conread position:306-462
               
               
               Cow position:chr11:51626980-51626826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:306-501
               
               
               Cow position:chr11:33468726-33468535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):148, 57

               
               
               Conread position:306-597
               
               
               Cow position:chr11:9088282-9088564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):24, 67

               
               
               Conread position:306-601
               
               
               Cow position:chr11:48697464-48697174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 87

               
               
               Conread position:306-614
               
               
               Cow position:chr11:18388857-18389143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:229
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):190, 58

               
               
               Conread position:306-614
               
               
               Cow position:chr11:32432163-32431850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):22, 71

               
               
               Conread position:306-614
               
               
               Cow position:chr11:68570652-68570958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 58

               
               
               Conread position:307-562
               
               
               Cow position:chr11:83768229-83767978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):153, 52

               
               
               Conread position:307-614
               
               
               Cow position:chr11:17968566-17968862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 57

               
               
               Conread position:309-607
               
               
               Cow position:chr11:56796727-56797018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):125, 149

               
               
               Conread position:309-614
               
               
               Cow position:chr11:53130826-53130526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 62

               
               
               Conread position:311-457
               
               
               Cow position:chr11:31526456-31526601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:311-603
               
               
               Cow position:chr11:86925929-86926193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):144, 27

               
               
               Conread position:311-613
               
               
               Cow position:chr11:7333709-7334007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:217
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):77, 52

               
               
               Conread position:311-615
               
               
               Cow position:chr11:42232619-42232328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):54, 169

               
               
               Conread position:311-616
               
               
               Cow position:chr11:9837088-9837387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 26

               
               
               Conread position:311-644
               
               
               Cow position:chr11:43526115-43526440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:215
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):122, 162

               
               
               Conread position:312-473
               
               
               Cow position:chr11:65435864-65435704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):151, 42

               
               
               Conread position:312-611
               
               
               Cow position:chr11:4412012-4412303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):267, 50

               
               
               Conread position:313-543
               
               
               Cow position:chr11:18373084-18372862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):143, 44

               
               
               Conread position:314-536
               
               
               Cow position:chr11:36672036-36672259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:177
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):141, 49

               
               
               Conread position:314-627
               
               
               Cow position:chr11:32610006-32609692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):201, 49

               
               
               Conread position:317-502
               
               
               Cow position:chr11:15525972-15525775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):44, 103

               
               
               Conread position:317-537
               
               
               Cow position:chr11:36301073-36301290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:169
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):134, 54

               
               
               Conread position:317-605
               
               
               Cow position:chr11:47165136-47165414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 60

               
               
               Conread position:317-613
               
               
               Cow position:chr11:85764940-85764665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:216
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):277, 55

               
               
               Conread position:318-514
               
               
               Cow position:chr11:18399324-18399523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):143, 51

               
               
               Conread position:318-560
               
               
               Cow position:chr11:2514590-2514825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:318-581
               
               
               Cow position:chr11:2050583-2050326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):138, 35

               
               
               Conread position:319-603
               
               
               Cow position:chr11:67950969-67951236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:211
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:319-614
               
               
               Cow position:chr11:41239266-41239558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 44

               
               
               Conread position:321-548
               
               
               Cow position:chr11:21830347-21830573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:173
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):42, 169

               
               
               Conread position:322-522
               
               
               Cow position:chr11:47109973-47109772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):79, 185

               
               
               Conread position:322-545
               
               
               Cow position:chr11:35543869-35543652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):138, 47

               
               
               Conread position:322-562
               
               
               Cow position:chr11:35668711-35668953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):49, 195

               
               
               Conread position:322-571
               
               
               Cow position:chr11:62808652-62808892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 40

               
               
               Conread position:322-586
               
               
               Cow position:chr11:63516827-63516564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 40

               
               
               Conread position:322-594
               
               
               Cow position:chr11:62045396-62045132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:199
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):126, 45

               
               
               Conread position:322-601
               
               
               Cow position:chr11:8105785-8105509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 57

               
               
               Conread position:322-603
               
               
               Cow position:chr11:48901083-48901353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:322-606
               
               
               Cow position:chr11:47586350-47586624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 41

               
               
               Conread position:322-611
               
               
               Cow position:chr11:58460112-58459847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):5, 42

               
               
               Conread position:322-614
               
               
               Cow position:chr11:31901046-31900762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:216
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):136, 52

               
               
               Conread position:322-614
               
               
               Cow position:chr11:65857860-65857571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 57

               
               
               Conread position:322-629
               
               
               Cow position:chr11:77241370-77241077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 41

               
               
               Conread position:322-646
               
               
               Cow position:chr11:62965548-62965871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 51

               
               
               Conread position:322-652
               
               
               Cow position:chr11:41577020-41577326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:240
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:323-623
               
               
               Cow position:chr11:30110961-30110676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 40

               
               
               Conread position:325-614
               
               
               Cow position:chr11:1485362-1485647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 38

               
               
               Conread position:326-463
               
               
               Cow position:chr11:10837530-10837668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:326-584
               
               
               Cow position:chr11:37100361-37100616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):125, 36

               
               
               Conread position:326-596
               
               
               Cow position:chr11:71455788-71455519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 24

               
               
               Conread position:326-606
               
               
               Cow position:chr11:77208038-77207770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:327-608
               
               
               Cow position:chr11:81614645-81614912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):123, 42

               
               
               Conread position:329-619
               
               
               Cow position:chr11:35149155-35148877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):5, 37

               
               
               Conread position:330-600
               
               
               Cow position:chr11:12555412-12555690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):33, 181

               
               
               Conread position:332-548
               
               
               Cow position:chr11:38891700-38891910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):110, 40

               
               
               Conread position:334-614
               
               
               Cow position:chr11:25320044-25319764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 53

               
               
               Conread position:335-612
               
               
               Cow position:chr11:21819454-21819720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:205
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):27, 169

               
               
               Conread position:336-620
               
               
               Cow position:chr11:49106043-49105767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 38

               
               
               Conread position:339-606
               
               
               Cow position:chr11:75748417-75748157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 23

               
               
               Conread position:340-546
               
               
               Cow position:chr11:5526589-5526793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):120, 22

               
               
               Conread position:340-613
               
               
               Cow position:chr11:31885502-31885231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):108, 144

               
               
               Conread position:340-614
               
               
               Cow position:chr11:4384601-4384339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:197
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):111, 23

               
               
               Conread position:340-614
               
               
               Cow position:chr11:43914197-43913936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:206
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):115, 141

               
               
               Conread position:349-614
               
               
               Cow position:chr11:81066614-81066868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):111, 20

               
               
               Conread position:360-614
               
               
               Cow position:chr11:33255755-33256007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:171
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):9, 29

               
               
               Conread position:366-497
               
               
               Cow position:chr11:29786647-29786780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:105
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):89, 108

               
               
               Conread position:375-494
               
               
               Cow position:chr11:29266490-29266370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:375-635
               
               
               Cow position:chr11:53719892-53719638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:193
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:375-640
               
               
               Cow position:chr11:57111358-57111620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 133

               
               
               Conread position:375-648
               
               
               Cow position:chr11:34121712-34121439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):68, 60

               
               
               Conread position:377-529
               
               
               Cow position:chr11:7574273-7574123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):83, 11

               
               
               Conread position:377-603
               
               
               Cow position:chr11:35276248-35276025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 46

               
               
               Conread position:377-623
               
               
               Cow position:chr11:19508242-19508001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 135

               
               
               Conread position:380-547
               
               
               Cow position:chr11:40860765-40860936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:380-614
               
               
               Cow position:chr11:65693894-65694123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:380-614
               
               
               Cow position:chr11:74929727-74929494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 135

               
               
               Conread position:383-614
               
               
               Cow position:chr11:46770516-46770741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):74, 50

               
               
               Conread position:383-625
               
               
               Cow position:chr11:25165383-25165148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:384-601
               
               
               Cow position:chr11:41598785-41599001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:384-619
               
               
               Cow position:chr11:46399065-46398836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):50, 94

               
               
               Conread position:384-663
               
               
               Cow position:chr11:70399800-70399522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):50, 43

               
               
               Conread position:386-560
               
               
               Cow position:chr11:6329187-6329013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):73, 119

               
               
               Conread position:387-614
               
               
               Cow position:chr11:43593929-43593706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):73, 108

               
               
               Conread position:388-571
               
               
               Cow position:chr11:41438284-41438468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):67, 113

               
               
               Conread position:388-614
               
               
               Cow position:chr11:34413034-34412810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):68, 113

               
               
               Conread position:390-548
               
               
               Cow position:chr11:79814779-79814937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):70, 123

               
               
               Conread position:390-606
               
               
               Cow position:chr11:8714418-8714202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):70, 125

               
               
               Conread position:390-611
               
               
               Cow position:chr11:76206324-76206105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):61, 65

               
               
               Conread position:390-612
               
               
               Cow position:chr11:33600751-33600972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):64, 51

               
               
               Conread position:390-614
               
               
               Cow position:chr11:8564037-8564261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):70, 125

               
               
               Conread position:390-614
               
               
               Cow position:chr11:17981348-17981123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):70, 211

               
               
               Conread position:390-614
               
               
               Cow position:chr11:31437060-31437285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):70, 85

               
               
               Conread position:390-614
               
               
               Cow position:chr11:38843501-38843277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):70, 125

               
               
               Conread position:390-614
               
               
               Cow position:chr11:71333382-71333159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):70, 123

               
               
               Conread position:390-614
               
               
               Cow position:chr11:75195260-75195480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:390-654
               
               
               Cow position:chr11:8247125-8246856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):66, 125

               
               
               Conread position:391-607
               
               
               Cow position:chr11:10127691-10127893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:391-614
               
               
               Cow position:chr11:44511576-44511801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):69, 126

               
               
               Conread position:392-614
               
               
               Cow position:chr11:58140567-58140352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:394-659
               
               
               Cow position:chr11:36229445-36229709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):66, 121

               
               
               Conread position:399-603
               
               
               Cow position:chr11:37118414-37118209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:163
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):57, 117

               
               
               Conread position:401-615
               
               
               Cow position:chr11:85189459-85189670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:402-603
               
               
               Cow position:chr11:58600786-58600585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):58, 110

               
               
               Conread position:406-532
               
               
               Cow position:chr11:38667678-38667551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:408-626
               
               
               Cow position:chr11:62376520-62376736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):19, 23

               
               
               Conread position:417-607
               
               
               Cow position:chr11:55117389-55117193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:159
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):38, 104

               
               
               Conread position:418-614
               
               
               Cow position:chr11:6620379-6620578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):38, 99

               
               
               Conread position:430-537
               
               
               Cow position:chr11:83033804-83033910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):84, 0
Show alignments to all cow chromosomes.