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Cow genome map

           
Conread name:
           
Pig3-SRG8028A22
        

               
Conread position:
               
80-334
               

               
Cow position:
               
chr3:986246-985995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
41, 27
               

               
Conread position:
               
87-626
               

               
Cow position:
               
chr3:16547900-16547372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
554
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 132
               

               
Conread position:
               
89-421
               

               
Cow position:
               
chr3:22165191-22165521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
80, 125
               

               
Conread position:
               
90-596
               

               
Cow position:
               
chr3:70676455-70675947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
17, 11
               

               
Conread position:
               
94-360
               

               
Cow position:
               
chr3:52457127-52456873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
88, 42
               

               
Conread position:
               
96-355
               

               
Cow position:
               
chr3:13240855-13241117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
11, 121
               

               
Conread position:
               
96-603
               

               
Cow position:
               
chr3:30180301-30179802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 114
               

               
Conread position:
               
99-435
               

               
Cow position:
               
chr3:58317737-58318071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 32
               

               
Conread position:
               
101-402
               

               
Cow position:
               
chr3:10591306-10591603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
72, 27
               

               
Conread position:
               
102-289
               

               
Cow position:
               
chr3:55105938-55106122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
64, 11
               

               
Conread position:
               
102-424
               

               
Cow position:
               
chr3:83988746-83988425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
10, 119
               

               
Conread position:
               
102-605
               

               
Cow position:
               
chr3:54903780-54903291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 114
               

               
Conread position:
               
103-424
               

               
Cow position:
               
chr3:3656726-3656407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 109
               

               
Conread position:
               
103-572
               

               
Cow position:
               
chr3:52651869-52652323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 113
               

               
Conread position:
               
104-412
               

               
Cow position:
               
chr3:49363319-49363020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
13, 112
               

               
Conread position:
               
104-445
               

               
Cow position:
               
chr3:56678138-56678481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
42, 24
               

               
Conread position:
               
105-355
               

               
Cow position:
               
chr3:6728112-6728370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
105-439
               

               
Cow position:
               
chr3:22668621-22668293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
25, 111
               

               
Conread position:
               
105-584
               

               
Cow position:
               
chr3:31225626-31225188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 8
               

               
Conread position:
               
105-615
               

               
Cow position:
               
chr3:14465508-14465996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 14
               

               
Conread position:
               
106-341
               

               
Cow position:
               
chr3:45314558-45314318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
29, 8
               

               
Conread position:
               
106-345
               

               
Cow position:
               
chr3:74127295-74127533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
60, 9
               

               
Conread position:
               
106-446
               

               
Cow position:
               
chr3:14193984-14194307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
259, 9
               

               
Conread position:
               
106-603
               

               
Cow position:
               
chr3:26904307-26903835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 64
               

               
Conread position:
               
106-603
               

               
Cow position:
               
chr3:38864325-38863833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 71
               

               
Conread position:
               
107-459
               

               
Cow position:
               
chr3:1517306-1517655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
41, 105
               

               
Conread position:
               
107-543
               

               
Cow position:
               
chr3:45211510-45211075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 10
               

               
Conread position:
               
107-582
               

               
Cow position:
               
chr3:7337584-7338033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 13
               

               
Conread position:
               
107-595
               

               
Cow position:
               
chr3:51578120-51578593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 27
               

               
Conread position:
               
107-605
               

               
Cow position:
               
chr3:65058907-65058420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 110
               

               
Conread position:
               
107-613
               

               
Cow position:
               
chr3:59630301-59630790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 7
               

               
Conread position:
               
107-614
               

               
Cow position:
               
chr3:50768883-50768388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 27
               

               
Conread position:
               
108-538
               

               
Cow position:
               
chr3:20841674-20842075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 16
               

               
Conread position:
               
109-337
               

               
Cow position:
               
chr3:73589564-73589793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
60, 22
               

               
Conread position:
               
109-413
               

               
Cow position:
               
chr3:4071566-4071859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
59, 20
               

               
Conread position:
               
109-459
               

               
Cow position:
               
chr3:76156193-76155846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
28, 108
               

               
Conread position:
               
109-602
               

               
Cow position:
               
chr3:2675239-2674750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 108
               

               
Conread position:
               
109-603
               

               
Cow position:
               
chr3:1830370-1830843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 40
               

               
Conread position:
               
109-621
               

               
Cow position:
               
chr3:15388422-15387915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 14
               

               
Conread position:
               
110-366
               

               
Cow position:
               
chr3:5040099-5040358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
9, 110
               

               
Conread position:
               
110-459
               

               
Cow position:
               
chr3:17331921-17331585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
59, 32
               

               
Conread position:
               
110-512
               

               
Cow position:
               
chr3:67698482-67698085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
57, 97
               

               
Conread position:
               
110-529
               

               
Cow position:
               
chr3:27696761-27697189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 170
               

               
Conread position:
               
110-610
               

               
Cow position:
               
chr3:71161990-71161507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 18
               

               
Conread position:
               
111-517
               

               
Cow position:
               
chr3:66631144-66631561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
54, 17
               

               
Conread position:
               
112-341
               

               
Cow position:
               
chr3:76056088-76056311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
57, 8
               

               
Conread position:
               
112-347
               

               
Cow position:
               
chr3:42589299-42589077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
26, 8
               

               
Conread position:
               
112-444
               

               
Cow position:
               
chr3:35621525-35621176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 231
               

               
Conread position:
               
112-503
               

               
Cow position:
               
chr3:19199189-19198802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
14, 102
               

               
Conread position:
               
112-614
               

               
Cow position:
               
chr3:19711138-19711606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
55, 24
               

               
Conread position:
               
112-616
               

               
Cow position:
               
chr3:18393201-18393673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 12
               

               
Conread position:
               
113-317
               

               
Cow position:
               
chr3:46259911-46259708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
55, 16
               

               
Conread position:
               
113-321
               

               
Cow position:
               
chr3:79398344-79398136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
56, 18
               

               
Conread position:
               
113-468
               

               
Cow position:
               
chr3:59299775-59299430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
27, 101
               

               
Conread position:
               
113-513
               

               
Cow position:
               
chr3:55318698-55319098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 19
               

               
Conread position:
               
113-614
               

               
Cow position:
               
chr3:48851766-48852257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 103
               

               
Conread position:
               
114-352
               

               
Cow position:
               
chr3:64648710-64648455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
114-506
               

               
Cow position:
               
chr3:45667142-45667536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
23, 73
               

               
Conread position:
               
114-565
               

               
Cow position:
               
chr3:12705347-12705801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 96
               

               
Conread position:
               
114-586
               

               
Cow position:
               
chr3:60933618-60933152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 102
               

               
Conread position:
               
115-360
               

               
Cow position:
               
chr3:28258311-28258050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
111, 50
               

               
Conread position:
               
116-357
               

               
Cow position:
               
chr3:35624347-35624586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
50, 15
               

               
Conread position:
               
116-360
               

               
Cow position:
               
chr3:59828193-59828438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
53, 25
               

               
Conread position:
               
116-377
               

               
Cow position:
               
chr3:73335476-73335222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
66, 94
               

               
Conread position:
               
116-444
               

               
Cow position:
               
chr3:58134486-58134814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
20, 111
               

               
Conread position:
               
117-318
               

               
Cow position:
               
chr3:76300971-76300767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
10, 98
               

               
Conread position:
               
117-355
               

               
Cow position:
               
chr3:41863818-41863584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
58, 97
               

               
Conread position:
               
117-403
               

               
Cow position:
               
chr3:36160003-36160281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
16, 51
               

               
Conread position:
               
117-445
               

               
Cow position:
               
chr3:42434133-42434460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
50, 25
               

               
Conread position:
               
117-470
               

               
Cow position:
               
chr3:81039551-81039898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
49, 25
               

               
Conread position:
               
117-508
               

               
Cow position:
               
chr3:55434527-55434141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
52, 94
               

               
Conread position:
               
117-535
               

               
Cow position:
               
chr3:36375342-36375760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 94
               

               
Conread position:
               
117-585
               

               
Cow position:
               
chr3:75080946-75080504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 13
               

               
Conread position:
               
117-597
               

               
Cow position:
               
chr3:54946317-54945851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 72
               

               
Conread position:
               
117-614
               

               
Cow position:
               
chr3:53271027-53270535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 12
               

               
Conread position:
               
117-619
               

               
Cow position:
               
chr3:14601516-14602009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 58
               

               
Conread position:
               
117-629
               

               
Cow position:
               
chr3:9662974-9663492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 12
               

               
Conread position:
               
118-425
               

               
Cow position:
               
chr3:9117230-9116920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
27, 199
               

               
Conread position:
               
118-499
               

               
Cow position:
               
chr3:26982245-26981883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 48
               

               
Conread position:
               
118-553
               

               
Cow position:
               
chr3:71135986-71135558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
38, 65
               

               
Conread position:
               
118-601
               

               
Cow position:
               
chr3:43307317-43307814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
51, 13
               

               
Conread position:
               
118-602
               

               
Cow position:
               
chr3:79221048-79220570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
176, 61
               

               
Conread position:
               
118-616
               

               
Cow position:
               
chr3:54435167-54434681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 117
               

               
Conread position:
               
118-623
               

               
Cow position:
               
chr3:39969668-39970172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 92
               

               
Conread position:
               
119-444
               

               
Cow position:
               
chr3:13380085-13380413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
50, 24
               

               
Conread position:
               
120-309
               

               
Cow position:
               
chr3:68094345-68094150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
120-343
               

               
Cow position:
               
chr3:21959858-21959631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
49, 65
               

               
Conread position:
               
120-362
               

               
Cow position:
               
chr3:15973765-15973519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
20, 96
               

               
Conread position:
               
120-365
               

               
Cow position:
               
chr3:83889442-83889197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
49, 94
               

               
Conread position:
               
120-438
               

               
Cow position:
               
chr3:26992766-26992446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
49, 106
               

               
Conread position:
               
120-604
               

               
Cow position:
               
chr3:55124092-55124559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 9
               

               
Conread position:
               
120-614
               

               
Cow position:
               
chr3:48253073-48252606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 97
               

               
Conread position:
               
121-326
               

               
Cow position:
               
chr3:59317892-59317691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
45, 92
               

               
Conread position:
               
121-328
               

               
Cow position:
               
chr3:15660087-15660303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
48, 197
               

               
Conread position:
               
121-349
               

               
Cow position:
               
chr3:44960138-44959908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
11, 94
               

               
Conread position:
               
121-361
               

               
Cow position:
               
chr3:40212844-40213079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
47, 10
               

               
Conread position:
               
121-363
               

               
Cow position:
               
chr3:59920233-59919984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
49, 220
               

               
Conread position:
               
121-402
               

               
Cow position:
               
chr3:64197017-64196739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
52, 93
               

               
Conread position:
               
121-407
               

               
Cow position:
               
chr3:51608990-51609276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
25, 95
               

               
Conread position:
               
121-407
               

               
Cow position:
               
chr3:69785430-69785716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
52, 7
               

               
Conread position:
               
121-408
               

               
Cow position:
               
chr3:23203037-23203325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
48, 93
               

               
Conread position:
               
121-441
               

               
Cow position:
               
chr3:48468368-48468059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
45, 93
               

               
Conread position:
               
121-449
               

               
Cow position:
               
chr3:72342442-72342113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
15, 95
               

               
Conread position:
               
121-454
               

               
Cow position:
               
chr3:64527040-64526712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
14, 91
               

               
Conread position:
               
121-458
               

               
Cow position:
               
chr3:74939772-74939417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
52, 15
               

               
Conread position:
               
121-459
               

               
Cow position:
               
chr3:79271517-79271864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
46, 79
               

               
Conread position:
               
121-487
               

               
Cow position:
               
chr3:32787653-32787291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
47, 10
               

               
Conread position:
               
121-493
               

               
Cow position:
               
chr3:26488885-26489259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
47, 80
               

               
Conread position:
               
121-513
               

               
Cow position:
               
chr3:30940997-30940625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 43
               

               
Conread position:
               
121-513
               

               
Cow position:
               
chr3:79824727-79825111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
52, 75
               

               
Conread position:
               
121-564
               

               
Cow position:
               
chr3:53836518-53836925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
48, 88
               

               
Conread position:
               
121-581
               

               
Cow position:
               
chr3:30008712-30009168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
11, 73
               

               
Conread position:
               
121-581
               

               
Cow position:
               
chr3:71238345-71237899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 91
               

               
Conread position:
               
121-593
               

               
Cow position:
               
chr3:13301657-13302126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 76
               

               
Conread position:
               
121-603
               

               
Cow position:
               
chr3:59605036-59604591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 95
               

               
Conread position:
               
121-603
               

               
Cow position:
               
chr3:75158547-75158085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 90
               

               
Conread position:
               
121-603
               

               
Cow position:
               
chr3:79902689-79902223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
47, 93
               

               
Conread position:
               
121-607
               

               
Cow position:
               
chr3:18067324-18066850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 63
               

               
Conread position:
               
121-607
               

               
Cow position:
               
chr3:71247206-71246753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 49
               

               
Conread position:
               
121-612
               

               
Cow position:
               
chr3:72474113-72473618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 10
               

               
Conread position:
               
121-613
               

               
Cow position:
               
chr3:51033566-51033055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
12, 104
               

               
Conread position:
               
121-614
               

               
Cow position:
               
chr3:15953890-15954368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 93
               

               
Conread position:
               
121-614
               

               
Cow position:
               
chr3:83491272-83490785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 83
               

               
Conread position:
               
121-619
               

               
Cow position:
               
chr3:29813418-29812948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 82
               

               
Conread position:
               
121-623
               

               
Cow position:
               
chr3:59333950-59333475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 15
               

               
Conread position:
               
121-625
               

               
Cow position:
               
chr3:61539991-61539493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 61
               

               
Conread position:
               
121-628
               

               
Cow position:
               
chr3:61170003-61169478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 10
               

               
Conread position:
               
121-629
               

               
Cow position:
               
chr3:27274717-27274232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 20
               

               
Conread position:
               
122-337
               

               
Cow position:
               
chr3:75966590-75966803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
11, 91
               

               
Conread position:
               
122-361
               

               
Cow position:
               
chr3:81234578-81234343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
47, 14
               

               
Conread position:
               
122-372
               

               
Cow position:
               
chr3:72027831-72027576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
12, 94
               

               
Conread position:
               
122-452
               

               
Cow position:
               
chr3:18059895-18059567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 92
               

               
Conread position:
               
122-486
               

               
Cow position:
               
chr3:54100520-54100891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 252
               

               
Conread position:
               
122-522
               

               
Cow position:
               
chr3:75853143-75853533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 85
               

               
Conread position:
               
122-571
               

               
Cow position:
               
chr3:43233694-43233255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 92
               

               
Conread position:
               
123-334
               

               
Cow position:
               
chr3:59947857-59947646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
43, 6
               

               
Conread position:
               
123-459
               

               
Cow position:
               
chr3:3889388-3889708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
124, 13
               

               
Conread position:
               
124-289
               

               
Cow position:
               
chr3:42926513-42926673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
45, 7
               

               
Conread position:
               
124-318
               

               
Cow position:
               
chr3:23037318-23037512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
19, 89
               

               
Conread position:
               
124-329
               

               
Cow position:
               
chr3:13949347-13949573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
20, 200
               

               
Conread position:
               
124-332
               

               
Cow position:
               
chr3:25037814-25038009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
167, 45
               

               
Conread position:
               
124-333
               

               
Cow position:
               
chr3:20158263-20158050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
43, 125
               

               
Conread position:
               
124-343
               

               
Cow position:
               
chr3:67407180-67407394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
44, 17
               

               
Conread position:
               
124-345
               

               
Cow position:
               
chr3:8522966-8523180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
44, 12
               

               
Conread position:
               
124-348
               

               
Cow position:
               
chr3:24596243-24596456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
10, 42
               

               
Conread position:
               
124-406
               

               
Cow position:
               
chr3:31349921-31350194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
45, 18
               

               
Conread position:
               
124-413
               

               
Cow position:
               
chr3:75777879-75778157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
13, 46
               

               
Conread position:
               
124-421
               

               
Cow position:
               
chr3:3316620-3316916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 12
               

               
Conread position:
               
124-425
               

               
Cow position:
               
chr3:57704519-57704215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
41, 17
               

               
Conread position:
               
124-433
               

               
Cow position:
               
chr3:55094040-55094350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
8, 94
               

               
Conread position:
               
124-445
               

               
Cow position:
               
chr3:5696540-5696857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
45, 71
               

               
Conread position:
               
124-447
               

               
Cow position:
               
chr3:35055787-35056108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
31, 35
               

               
Conread position:
               
124-447
               

               
Cow position:
               
chr3:83787631-83787307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
45, 104
               

               
Conread position:
               
124-490
               

               
Cow position:
               
chr3:23920237-23920602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 90
               

               
Conread position:
               
124-517
               

               
Cow position:
               
chr3:67519986-67520375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
15, 91
               

               
Conread position:
               
124-526
               

               
Cow position:
               
chr3:54506895-54506501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 88
               

               
Conread position:
               
124-579
               

               
Cow position:
               
chr3:18687090-18686660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 87
               

               
Conread position:
               
124-603
               

               
Cow position:
               
chr3:49482525-49482984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 88
               

               
Conread position:
               
124-603
               

               
Cow position:
               
chr3:71231587-71231126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 90
               

               
Conread position:
               
124-614
               

               
Cow position:
               
chr3:210510-210031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 7
               

               
Conread position:
               
124-614
               

               
Cow position:
               
chr3:29891215-29891708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 92
               

               
Conread position:
               
124-614
               

               
Cow position:
               
chr3:35299876-35299383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
45, 24
               

               
Conread position:
               
124-614
               

               
Cow position:
               
chr3:68587208-68586747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 86
               

               
Conread position:
               
124-615
               

               
Cow position:
               
chr3:83474941-83474457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 17
               

               
Conread position:
               
125-328
               

               
Cow position:
               
chr3:58010646-58010841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
57, 47
               

               
Conread position:
               
125-343
               

               
Cow position:
               
chr3:39812250-39812023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
7, 200
               

               
Conread position:
               
125-350
               

               
Cow position:
               
chr3:28902574-28902794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
45, 88
               

               
Conread position:
               
125-486
               

               
Cow position:
               
chr3:48810450-48810805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 61
               

               
Conread position:
               
125-493
               

               
Cow position:
               
chr3:55819937-55819572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 88
               

               
Conread position:
               
125-598
               

               
Cow position:
               
chr3:8061308-8060855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 50
               

               
Conread position:
               
125-603
               

               
Cow position:
               
chr3:77365105-77365574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 11
               

               
Conread position:
               
125-615
               

               
Cow position:
               
chr3:48363258-48362791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 53
               

               
Conread position:
               
125-623
               

               
Cow position:
               
chr3:78945632-78946139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 218
               

               
Conread position:
               
126-339
               

               
Cow position:
               
chr3:19788651-19788854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
14, 39
               

               
Conread position:
               
126-457
               

               
Cow position:
               
chr3:17235017-17235348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 153
               

               
Conread position:
               
126-508
               

               
Cow position:
               
chr3:59597359-59596995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 10
               

               
Conread position:
               
126-582
               

               
Cow position:
               
chr3:52608361-52607924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 32
               

               
Conread position:
               
126-614
               

               
Cow position:
               
chr3:45882085-45881618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 10
               

               
Conread position:
               
128-321
               

               
Cow position:
               
chr3:49741111-49741307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
40, 8
               

               
Conread position:
               
128-353
               

               
Cow position:
               
chr3:8813919-8814150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
48, 26
               

               
Conread position:
               
128-406
               

               
Cow position:
               
chr3:48459142-48459421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
12, 87
               

               
Conread position:
               
128-470
               

               
Cow position:
               
chr3:70333784-70334117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
41, 86
               

               
Conread position:
               
128-614
               

               
Cow position:
               
chr3:53384095-53384574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 57
               

               
Conread position:
               
128-647
               

               
Cow position:
               
chr3:21081195-21081709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 151
               

               
Conread position:
               
129-325
               

               
Cow position:
               
chr3:81616266-81616463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
36, 90
               

               
Conread position:
               
129-370
               

               
Cow position:
               
chr3:69650712-69650944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
5, 42
               

               
Conread position:
               
129-386
               

               
Cow position:
               
chr3:9025894-9026157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
15, 90
               

               
Conread position:
               
129-425
               

               
Cow position:
               
chr3:73837533-73837824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
15, 86
               

               
Conread position:
               
129-459
               

               
Cow position:
               
chr3:48900144-48900479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 87
               

               
Conread position:
               
129-483
               

               
Cow position:
               
chr3:48072704-48073039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
53, 12
               

               
Conread position:
               
129-512
               

               
Cow position:
               
chr3:57274242-57273872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 62
               

               
Conread position:
               
129-545
               

               
Cow position:
               
chr3:83215454-83215031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 404
               

               
Conread position:
               
129-611
               

               
Cow position:
               
chr3:75480183-75479724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 82
               

               
Conread position:
               
129-614
               

               
Cow position:
               
chr3:62788971-62789495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
15, 259
               

               
Conread position:
               
129-615
               

               
Cow position:
               
chr3:23168884-23169362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 82
               

               
Conread position:
               
129-624
               

               
Cow position:
               
chr3:13353548-13353058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 73
               

               
Conread position:
               
130-333
               

               
Cow position:
               
chr3:47198943-47199145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
36, 60
               

               
Conread position:
               
130-337
               

               
Cow position:
               
chr3:27246784-27246981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
161, 39
               

               
Conread position:
               
130-395
               

               
Cow position:
               
chr3:27976346-27976604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
52, 32
               

               
Conread position:
               
130-402
               

               
Cow position:
               
chr3:53703764-53704051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
37, 125
               

               
Conread position:
               
130-495
               

               
Cow position:
               
chr3:15153871-15153513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 79
               

               
Conread position:
               
130-497
               

               
Cow position:
               
chr3:76922479-76922842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 37
               

               
Conread position:
               
130-500
               

               
Cow position:
               
chr3:15051767-15052134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 86
               

               
Conread position:
               
130-597
               

               
Cow position:
               
chr3:2025386-2024910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 124
               

               
Conread position:
               
130-614
               

               
Cow position:
               
chr3:62998812-62999292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 83
               

               
Conread position:
               
131-321
               

               
Cow position:
               
chr3:62186340-62186145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
131-321
               

               
Cow position:
               
chr3:80958328-80958517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
38, 11
               

               
Conread position:
               
131-334
               

               
Cow position:
               
chr3:41366518-41366729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
38, 91
               

               
Conread position:
               
131-352
               

               
Cow position:
               
chr3:83770916-83770694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
35, 79
               

               
Conread position:
               
131-353
               

               
Cow position:
               
chr3:84137632-84137853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
34, 82
               

               
Conread position:
               
131-356
               

               
Cow position:
               
chr3:5305986-5305757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
13, 39
               

               
Conread position:
               
131-361
               

               
Cow position:
               
chr3:7581536-7581763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
113, 79
               

               
Conread position:
               
131-367
               

               
Cow position:
               
chr3:11229188-11229417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
13, 80
               

               
Conread position:
               
131-370
               

               
Cow position:
               
chr3:8349389-8349620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
160, 74
               

               
Conread position:
               
131-429
               

               
Cow position:
               
chr3:58527559-58527281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
38, 78
               

               
Conread position:
               
131-439
               

               
Cow position:
               
chr3:6403603-6403300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
58, 84
               

               
Conread position:
               
131-454
               

               
Cow position:
               
chr3:76024686-76024383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
15, 80
               

               
Conread position:
               
131-459
               

               
Cow position:
               
chr3:11199794-11200122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
42, 83
               

               
Conread position:
               
131-459
               

               
Cow position:
               
chr3:71238658-71238332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 113
               

               
Conread position:
               
131-463
               

               
Cow position:
               
chr3:3883638-3883964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
38, 80
               

               
Conread position:
               
131-493
               

               
Cow position:
               
chr3:18143933-18144292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
36, 84
               

               
Conread position:
               
131-501
               

               
Cow position:
               
chr3:26739242-26739603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
37, 83
               

               
Conread position:
               
131-509
               

               
Cow position:
               
chr3:83797641-83798030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
38, 263
               

               
Conread position:
               
131-528
               

               
Cow position:
               
chr3:55712613-55712220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 38
               

               
Conread position:
               
131-537
               

               
Cow position:
               
chr3:76713130-76713536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 60
               

               
Conread position:
               
131-576
               

               
Cow position:
               
chr3:5044628-5045063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 83
               

               
Conread position:
               
131-579
               

               
Cow position:
               
chr3:2680718-2680255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 180
               

               
Conread position:
               
131-588
               

               
Cow position:
               
chr3:39661272-39661716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
38, 68
               

               
Conread position:
               
131-597
               

               
Cow position:
               
chr3:53592504-53592974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 88
               

               
Conread position:
               
131-601
               

               
Cow position:
               
chr3:24852407-24852865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
40, 90
               

               
Conread position:
               
131-603
               

               
Cow position:
               
chr3:13899272-13899733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 84
               

               
Conread position:
               
131-603
               

               
Cow position:
               
chr3:49460744-49461217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 81
               

               
Conread position:
               
131-611
               

               
Cow position:
               
chr3:80740735-80740290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 58
               

               
Conread position:
               
131-612
               

               
Cow position:
               
chr3:57754294-57754769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 18
               

               
Conread position:
               
131-613
               

               
Cow position:
               
chr3:48241788-48241331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
131-614
               

               
Cow position:
               
chr3:11253983-11254443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
37, 83
               

               
Conread position:
               
131-614
               

               
Cow position:
               
chr3:49118848-49119323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 68
               

               
Conread position:
               
131-614
               

               
Cow position:
               
chr3:59610537-59611007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 74
               

               
Conread position:
               
131-614
               

               
Cow position:
               
chr3:67929077-67929557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 66
               

               
Conread position:
               
131-614
               

               
Cow position:
               
chr3:78077374-78076898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 120
               

               
Conread position:
               
131-619
               

               
Cow position:
               
chr3:3985499-3985034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 84
               

               
Conread position:
               
131-619
               

               
Cow position:
               
chr3:65237205-65236729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 83
               

               
Conread position:
               
131-620
               

               
Cow position:
               
chr3:75050441-75050917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 81
               

               
Conread position:
               
131-645
               

               
Cow position:
               
chr3:64280756-64281254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 78
               

               
Conread position:
               
131-661
               

               
Cow position:
               
chr3:73467809-73467282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 59
               

               
Conread position:
               
132-336
               

               
Cow position:
               
chr3:6886407-6886200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
34, 125
               

               
Conread position:
               
132-370
               

               
Cow position:
               
chr3:82629495-82629261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
16, 24
               

               
Conread position:
               
132-372
               

               
Cow position:
               
chr3:84174485-84174244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
37, 82
               

               
Conread position:
               
132-389
               

               
Cow position:
               
chr3:61466989-61467264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
35, 260
               

               
Conread position:
               
132-407
               

               
Cow position:
               
chr3:23804684-23804427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
8, 83
               

               
Conread position:
               
132-407
               

               
Cow position:
               
chr3:71474226-71474498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
37, 78
               

               
Conread position:
               
132-416
               

               
Cow position:
               
chr3:31361604-31361319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
37, 73
               

               
Conread position:
               
132-460
               

               
Cow position:
               
chr3:1785040-1785384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
7, 247
               

               
Conread position:
               
132-495
               

               
Cow position:
               
chr3:62046851-62046485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 11
               

               
Conread position:
               
132-537
               

               
Cow position:
               
chr3:25477973-25477598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 82
               

               
Conread position:
               
132-548
               

               
Cow position:
               
chr3:53240448-53240048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
12, 45
               

               
Conread position:
               
132-548
               

               
Cow position:
               
chr3:68156910-68156505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 83
               

               
Conread position:
               
132-565
               

               
Cow position:
               
chr3:77006678-77006263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
8, 139
               

               
Conread position:
               
132-578
               

               
Cow position:
               
chr3:48579007-48578586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
12, 39
               

               
Conread position:
               
132-580
               

               
Cow position:
               
chr3:3556729-3556287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 81
               

               
Conread position:
               
132-590
               

               
Cow position:
               
chr3:29596576-29596126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 127
               

               
Conread position:
               
132-600
               

               
Cow position:
               
chr3:20663361-20663815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
41, 127
               

               
Conread position:
               
132-603
               

               
Cow position:
               
chr3:14801925-14801471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 79
               

               
Conread position:
               
132-604
               

               
Cow position:
               
chr3:57764395-57763942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 38
               

               
Conread position:
               
132-614
               

               
Cow position:
               
chr3:65969355-65968864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 393
               

               
Conread position:
               
132-615
               

               
Cow position:
               
chr3:3032590-3032106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 81
               

               
Conread position:
               
132-616
               

               
Cow position:
               
chr3:53739001-53739484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 37
               

               
Conread position:
               
132-619
               

               
Cow position:
               
chr3:2392788-2393262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 81
               

               
Conread position:
               
132-623
               

               
Cow position:
               
chr3:9641736-9641264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 37
               

               
Conread position:
               
132-623
               

               
Cow position:
               
chr3:23471278-23471768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 57
               

               
Conread position:
               
133-289
               

               
Cow position:
               
chr3:68624399-68624244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
35, 71
               

               
Conread position:
               
133-323
               

               
Cow position:
               
chr3:4086668-4086872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
133-334
               

               
Cow position:
               
chr3:43388945-43389147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
33, 81
               

               
Conread position:
               
133-337
               

               
Cow position:
               
chr3:56943750-56943948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
36, 80
               

               
Conread position:
               
133-367
               

               
Cow position:
               
chr3:30357689-30357471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
33, 75
               

               
Conread position:
               
133-408
               

               
Cow position:
               
chr3:54067977-54067704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
11, 81
               

               
Conread position:
               
133-445
               

               
Cow position:
               
chr3:18180143-18179818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
36, 81
               

               
Conread position:
               
133-447
               

               
Cow position:
               
chr3:60389933-60389638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
11, 33
               

               
Conread position:
               
133-480
               

               
Cow position:
               
chr3:58764906-58765239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
100, 36
               

               
Conread position:
               
133-501
               

               
Cow position:
               
chr3:81087461-81087803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
49, 18
               

               
Conread position:
               
133-571
               

               
Cow position:
               
chr3:31077545-31077980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
28, 80
               

               
Conread position:
               
133-571
               

               
Cow position:
               
chr3:44932692-44932260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 78
               

               
Conread position:
               
133-592
               

               
Cow position:
               
chr3:59474300-59473843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 71
               

               
Conread position:
               
133-597
               

               
Cow position:
               
chr3:59649433-59648986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 49
               

               
Conread position:
               
133-603
               

               
Cow position:
               
chr3:2518361-2518817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 83
               

               
Conread position:
               
133-603
               

               
Cow position:
               
chr3:7763838-7763383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 81
               

               
Conread position:
               
133-603
               

               
Cow position:
               
chr3:71496948-71497426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 236
               

               
Conread position:
               
133-614
               

               
Cow position:
               
chr3:14725496-14725006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 81
               

               
Conread position:
               
133-614
               

               
Cow position:
               
chr3:16752073-16752538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 82
               

               
Conread position:
               
133-614
               

               
Cow position:
               
chr3:35883752-35884244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
34, 84
               

               
Conread position:
               
133-614
               

               
Cow position:
               
chr3:49383151-49382661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 255
               

               
Conread position:
               
133-636
               

               
Cow position:
               
chr3:55970695-55970193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 127
               

               
Conread position:
               
133-671
               

               
Cow position:
               
chr3:23877174-23876645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 30
               

               
Conread position:
               
134-360
               

               
Cow position:
               
chr3:82366309-82366084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
12, 79
               

               
Conread position:
               
134-467
               

               
Cow position:
               
chr3:79196941-79196610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
52, 9
               

               
Conread position:
               
134-475
               

               
Cow position:
               
chr3:24468205-24468536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 78
               

               
Conread position:
               
134-602
               

               
Cow position:
               
chr3:44102145-44101702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 79
               

               
Conread position:
               
134-603
               

               
Cow position:
               
chr3:17456088-17456549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 80
               

               
Conread position:
               
134-614
               

               
Cow position:
               
chr3:17694823-17695297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 80
               

               
Conread position:
               
135-346
               

               
Cow position:
               
chr3:52845733-52845520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
34, 76
               

               
Conread position:
               
135-347
               

               
Cow position:
               
chr3:48483355-48483146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
47, 13
               

               
Conread position:
               
135-363
               

               
Cow position:
               
chr3:56948918-56949136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
47, 71
               

               
Conread position:
               
135-459
               

               
Cow position:
               
chr3:15443548-15443870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 79
               

               
Conread position:
               
135-461
               

               
Cow position:
               
chr3:33330012-33329670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
34, 136
               

               
Conread position:
               
135-494
               

               
Cow position:
               
chr3:19793075-19792716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 66
               

               
Conread position:
               
135-507
               

               
Cow position:
               
chr3:24872870-24872524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
47, 77
               

               
Conread position:
               
135-512
               

               
Cow position:
               
chr3:53875584-53875953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 64
               

               
Conread position:
               
135-540
               

               
Cow position:
               
chr3:46005837-46006248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 20
               

               
Conread position:
               
135-589
               

               
Cow position:
               
chr3:61224571-61225001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
33, 79
               

               
Conread position:
               
135-593
               

               
Cow position:
               
chr3:39066507-39066063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 40
               

               
Conread position:
               
135-615
               

               
Cow position:
               
chr3:8393517-8393054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 22
               

               
Conread position:
               
135-615
               

               
Cow position:
               
chr3:31419873-31419410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
34, 79
               

               
Conread position:
               
135-644
               

               
Cow position:
               
chr3:53790364-53790867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 71
               

               
Conread position:
               
136-318
               

               
Cow position:
               
chr3:19641242-19641057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
33, 178
               

               
Conread position:
               
136-357
               

               
Cow position:
               
chr3:54905783-54905576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
136-361
               

               
Cow position:
               
chr3:59702351-59702126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
33, 90
               

               
Conread position:
               
136-366
               

               
Cow position:
               
chr3:81923617-81923850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
29, 13
               

               
Conread position:
               
136-372
               

               
Cow position:
               
chr3:74644737-74644500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
32, 78
               

               
Conread position:
               
136-425
               

               
Cow position:
               
chr3:65019676-65019973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
33, 119
               

               
Conread position:
               
136-458
               

               
Cow position:
               
chr3:22221503-22221180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 77
               

               
Conread position:
               
136-459
               

               
Cow position:
               
chr3:2648331-2648653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
33, 79
               

               
Conread position:
               
136-502
               

               
Cow position:
               
chr3:15751546-15751906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 39
               

               
Conread position:
               
136-504
               

               
Cow position:
               
chr3:7662035-7661666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 79
               

               
Conread position:
               
136-512
               

               
Cow position:
               
chr3:76267796-76268176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 76
               

               
Conread position:
               
136-582
               

               
Cow position:
               
chr3:16333982-16333547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 79
               

               
Conread position:
               
136-585
               

               
Cow position:
               
chr3:2506299-2506743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 78
               

               
Conread position:
               
136-613
               

               
Cow position:
               
chr3:22716100-22716571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
40, 246
               

               
Conread position:
               
136-614
               

               
Cow position:
               
chr3:54781816-54782303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 120
               

               
Conread position:
               
136-614
               

               
Cow position:
               
chr3:56583025-56582552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 78
               

               
Conread position:
               
136-623
               

               
Cow position:
               
chr3:13329616-13330072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 76
               

               
Conread position:
               
136-626
               

               
Cow position:
               
chr3:80072320-80071813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 459
               

               
Conread position:
               
137-289
               

               
Cow position:
               
chr3:22078254-22078102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
32, 77
               

               
Conread position:
               
137-371
               

               
Cow position:
               
chr3:49344868-49344637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
45, 74
               

               
Conread position:
               
137-406
               

               
Cow position:
               
chr3:2638109-2637831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
137-437
               

               
Cow position:
               
chr3:15950741-15951031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
155, 42
               

               
Conread position:
               
137-476
               

               
Cow position:
               
chr3:77582282-77581950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 77
               

               
Conread position:
               
137-493
               

               
Cow position:
               
chr3:19586040-19585687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
32, 73
               

               
Conread position:
               
137-517
               

               
Cow position:
               
chr3:23105189-23105565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 77
               

               
Conread position:
               
137-546
               

               
Cow position:
               
chr3:17134507-17134116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
33, 76
               

               
Conread position:
               
137-546
               

               
Cow position:
               
chr3:78092335-78092733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 78
               

               
Conread position:
               
137-554
               

               
Cow position:
               
chr3:67929994-67930408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 155
               

               
Conread position:
               
137-555
               

               
Cow position:
               
chr3:38828927-38828528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 48
               

               
Conread position:
               
137-558
               

               
Cow position:
               
chr3:189051-188624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
9, 16
               

               
Conread position:
               
137-572
               

               
Cow position:
               
chr3:15752447-15752877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 9
               

               
Conread position:
               
137-601
               

               
Cow position:
               
chr3:18459361-18459798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 59
               

               
Conread position:
               
137-607
               

               
Cow position:
               
chr3:14553048-14552594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 28
               

               
Conread position:
               
137-614
               

               
Cow position:
               
chr3:55189574-55190041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 80
               

               
Conread position:
               
137-616
               

               
Cow position:
               
chr3:31309178-31309647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 73
               

               
Conread position:
               
137-616
               

               
Cow position:
               
chr3:33252716-33253171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 72
               

               
Conread position:
               
138-289
               

               
Cow position:
               
chr3:27146067-27145925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
44, 31
               

               
Conread position:
               
138-321
               

               
Cow position:
               
chr3:19044593-19044772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
29, 77
               

               
Conread position:
               
138-328
               

               
Cow position:
               
chr3:25702156-25702355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
30, 126
               

               
Conread position:
               
138-328
               

               
Cow position:
               
chr3:76168454-76168645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
30, 76
               

               
Conread position:
               
138-332
               

               
Cow position:
               
chr3:61023846-61024040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
27, 8
               

               
Conread position:
               
138-333
               

               
Cow position:
               
chr3:29234503-29234700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
28, 80
               

               
Conread position:
               
138-334
               

               
Cow position:
               
chr3:621616-621425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
31, 157
               

               
Conread position:
               
138-354
               

               
Cow position:
               
chr3:75107947-75107735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
36, 73
               

               
Conread position:
               
138-355
               

               
Cow position:
               
chr3:9121017-9120805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
44, 72
               

               
Conread position:
               
138-361
               

               
Cow position:
               
chr3:3947211-3946992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
96, 45
               

               
Conread position:
               
138-361
               

               
Cow position:
               
chr3:49996542-49996769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
31, 73
               

               
Conread position:
               
138-364
               

               
Cow position:
               
chr3:8181774-8182001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
28, 116
               

               
Conread position:
               
138-371
               

               
Cow position:
               
chr3:4549192-4548971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
154, 35
               

               
Conread position:
               
138-373
               

               
Cow position:
               
chr3:11281944-11281706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
31, 76
               

               
Conread position:
               
138-404
               

               
Cow position:
               
chr3:19682881-19682605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
138-415
               

               
Cow position:
               
chr3:47753412-47753126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
138-470
               

               
Cow position:
               
chr3:55177576-55177905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
38, 71
               

               
Conread position:
               
138-485
               

               
Cow position:
               
chr3:30222386-30222018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
138-497
               

               
Cow position:
               
chr3:70761948-70762302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 78
               

               
Conread position:
               
138-509
               

               
Cow position:
               
chr3:54373682-54374052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
30, 76
               

               
Conread position:
               
138-516
               

               
Cow position:
               
chr3:6182058-6182398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
138-537
               

               
Cow position:
               
chr3:70609800-70609408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 72
               

               
Conread position:
               
138-580
               

               
Cow position:
               
chr3:14632805-14633244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 17
               

               
Conread position:
               
138-585
               

               
Cow position:
               
chr3:73395290-73394854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 73
               

               
Conread position:
               
138-597
               

               
Cow position:
               
chr3:32585328-32584884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 46
               

               
Conread position:
               
138-599
               

               
Cow position:
               
chr3:56476849-56476406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 67
               

               
Conread position:
               
138-602
               

               
Cow position:
               
chr3:53222187-53221740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 72
               

               
Conread position:
               
138-603
               

               
Cow position:
               
chr3:75570271-75570721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 54
               

               
Conread position:
               
138-614
               

               
Cow position:
               
chr3:37041591-37041138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 27
               

               
Conread position:
               
138-614
               

               
Cow position:
               
chr3:68648352-68647869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 80
               

               
Conread position:
               
138-623
               

               
Cow position:
               
chr3:15159204-15158741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 15
               

               
Conread position:
               
138-623
               

               
Cow position:
               
chr3:17936672-17937139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 75
               

               
Conread position:
               
138-632
               

               
Cow position:
               
chr3:23408189-23408652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 75
               

               
Conread position:
               
139-370
               

               
Cow position:
               
chr3:15160691-15160468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
30, 69
               

               
Conread position:
               
139-536
               

               
Cow position:
               
chr3:4319893-4319497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 100
               

               
Conread position:
               
139-601
               

               
Cow position:
               
chr3:74234355-74233922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 24
               

               
Conread position:
               
139-617
               

               
Cow position:
               
chr3:20802466-20802923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 75
               

               
Conread position:
               
140-366
               

               
Cow position:
               
chr3:21642159-21641937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
71, 11
               

               
Conread position:
               
140-424
               

               
Cow position:
               
chr3:11640905-11640620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
42, 21
               

               
Conread position:
               
140-458
               

               
Cow position:
               
chr3:78093220-78093524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
29, 46
               

               
Conread position:
               
140-463
               

               
Cow position:
               
chr3:59040743-59040420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
27, 74
               

               
Conread position:
               
140-614
               

               
Cow position:
               
chr3:10958071-10958519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 68
               

               
Conread position:
               
141-346
               

               
Cow position:
               
chr3:20021440-20021238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
26, 62
               

               
Conread position:
               
141-459
               

               
Cow position:
               
chr3:21014784-21015101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
28, 35
               

               
Conread position:
               
141-477
               

               
Cow position:
               
chr3:59035215-59034874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
28, 73
               

               
Conread position:
               
142-361
               

               
Cow position:
               
chr3:36914241-36914004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
142-363
               

               
Cow position:
               
chr3:56704144-56704369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
41, 15
               

               
Conread position:
               
142-410
               

               
Cow position:
               
chr3:14547170-14546909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
27, 72
               

               
Conread position:
               
142-461
               

               
Cow position:
               
chr3:17058376-17058682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 50
               

               
Conread position:
               
142-551
               

               
Cow position:
               
chr3:68145684-68146064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
142-578
               

               
Cow position:
               
chr3:26970982-26970570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 69
               

               
Conread position:
               
142-611
               

               
Cow position:
               
chr3:60597708-60597263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 92
               

               
Conread position:
               
142-614
               

               
Cow position:
               
chr3:53150504-53150036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 50
               

               
Conread position:
               
143-395
               

               
Cow position:
               
chr3:10668709-10668957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
26, 70
               

               
Conread position:
               
143-516
               

               
Cow position:
               
chr3:63269404-63269028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 36
               

               
Conread position:
               
143-597
               

               
Cow position:
               
chr3:74500427-74499950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 56
               

               
Conread position:
               
143-602
               

               
Cow position:
               
chr3:7678835-7678394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 147
               

               
Conread position:
               
144-421
               

               
Cow position:
               
chr3:75238630-75238354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
7, 71
               

               
Conread position:
               
144-614
               

               
Cow position:
               
chr3:49679303-49678831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 84
               

               
Conread position:
               
144-623
               

               
Cow position:
               
chr3:58540348-58540830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 57
               

               
Conread position:
               
146-619
               

               
Cow position:
               
chr3:17221966-17222439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 64
               

               
Conread position:
               
147-333
               

               
Cow position:
               
chr3:62312964-62312778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
22, 70
               

               
Conread position:
               
147-333
               

               
Cow position:
               
chr3:62370223-62370037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
22, 71
               

               
Conread position:
               
147-350
               

               
Cow position:
               
chr3:26603380-26603590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
22, 85
               

               
Conread position:
               
148-333
               

               
Cow position:
               
chr3:36190064-36189872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
50, 115
               

               
Conread position:
               
150-399
               

               
Cow position:
               
chr3:40145630-40145385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
19, 64
               

               
Conread position:
               
150-470
               

               
Cow position:
               
chr3:19793427-19793745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
19, 64
               

               
Conread position:
               
150-603
               

               
Cow position:
               
chr3:53046495-53046937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 64
               

               
Conread position:
               
151-548
               

               
Cow position:
               
chr3:74119268-74119671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
18, 61
               

               
Conread position:
               
154-610
               

               
Cow position:
               
chr3:70334533-70334990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 60
               

               
Conread position:
               
154-613
               

               
Cow position:
               
chr3:64010654-64011105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 61
               

               
Conread position:
               
155-459
               

               
Cow position:
               
chr3:73820207-73820511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 83
               

               
Conread position:
               
155-513
               

               
Cow position:
               
chr3:74079480-74079834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 59
               

               
Conread position:
               
155-544
               

               
Cow position:
               
chr3:16656327-16656702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 59
               

               
Conread position:
               
155-614
               

               
Cow position:
               
chr3:7566263-7566710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 60
               

               
Conread position:
               
164-349
               

               
Cow position:
               
chr3:11705404-11705217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
30, 23
               

               
Conread position:
               
165-368
               

               
Cow position:
               
chr3:74787571-74787377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
17, 33
               

               
Conread position:
               
165-549
               

               
Cow position:
               
chr3:74134852-74134479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 26
               

               
Conread position:
               
165-590
               

               
Cow position:
               
chr3:69416633-69417055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 38
               

               
Conread position:
               
165-619
               

               
Cow position:
               
chr3:65413129-65413571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 46
               

               
Conread position:
               
165-622
               

               
Cow position:
               
chr3:66900581-66901041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 92
               

               
Conread position:
               
167-616
               

               
Cow position:
               
chr3:72391231-72390792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 56
               

               
Conread position:
               
168-430
               

               
Cow position:
               
chr3:32409361-32409098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
14, 7
               

               
Conread position:
               
172-593
               

               
Cow position:
               
chr3:70900033-70899630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 21
               

               
Conread position:
               
172-623
               

               
Cow position:
               
chr3:77271140-77271568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 39
               

               
Conread position:
               
174-351
               

               
Cow position:
               
chr3:91220-91039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
8, 120
               

               
Conread position:
               
177-615
               

               
Cow position:
               
chr3:5100636-5101052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 14
               

               
Conread position:
               
179-449
               

               
Cow position:
               
chr3:84175688-84175957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 15
               

               
Conread position:
               
179-633
               

               
Cow position:
               
chr3:46901338-46900884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 14
               

               
Conread position:
               
180-585
               

               
Cow position:
               
chr3:75045741-75046132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 36
               

               
Conread position:
               
181-319
               

               
Cow position:
               
chr3:27670549-27670409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
181-351
               

               
Cow position:
               
chr3:15237562-15237727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
145, 90
               

               
Conread position:
               
181-351
               

               
Cow position:
               
chr3:44330303-44330473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
111, 12
               

               
Conread position:
               
181-443
               

               
Cow position:
               
chr3:8901767-8901517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
9, 117
               

               
Conread position:
               
181-479
               

               
Cow position:
               
chr3:53508745-53508460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
111, 12
               

               
Conread position:
               
181-548
               

               
Cow position:
               
chr3:15506581-15506222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 12
               

               
Conread position:
               
181-579
               

               
Cow position:
               
chr3:73709175-73708793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 26
               

               
Conread position:
               
181-619
               

               
Cow position:
               
chr3:28898091-28898518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 29
               

               
Conread position:
               
181-623
               

               
Cow position:
               
chr3:63179988-63179568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 34
               

               
Conread position:
               
181-626
               

               
Cow position:
               
chr3:31046816-31047246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 25
               

               
Conread position:
               
181-636
               

               
Cow position:
               
chr3:6690131-6689679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 42
               

               
Conread position:
               
183-552
               

               
Cow position:
               
chr3:19404429-19404094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
144, 44
               

               
Conread position:
               
184-612
               

               
Cow position:
               
chr3:70565609-70566027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 38
               

               
Conread position:
               
185-466
               

               
Cow position:
               
chr3:61323458-61323185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
104, 23
               

               
Conread position:
               
187-360
               

               
Cow position:
               
chr3:77589641-77589474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
99, 27
               

               
Conread position:
               
187-605
               

               
Cow position:
               
chr3:66375451-66375039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 60
               

               
Conread position:
               
188-477
               

               
Cow position:
               
chr3:79645306-79645603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
83, 22
               

               
Conread position:
               
188-645
               

               
Cow position:
               
chr3:4032088-4031646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 22
               

               
Conread position:
               
190-586
               

               
Cow position:
               
chr3:52017894-52017493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 7
               

               
Conread position:
               
191-361
               

               
Cow position:
               
chr3:53904583-53904411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
17, 49
               

               
Conread position:
               
191-623
               

               
Cow position:
               
chr3:78894216-78894614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
39, 101
               

               
Conread position:
               
192-376
               

               
Cow position:
               
chr3:41652499-41652315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
45, 17
               

               
Conread position:
               
193-617
               

               
Cow position:
               
chr3:17934818-17935217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 34
               

               
Conread position:
               
194-447
               

               
Cow position:
               
chr3:3649103-3649347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
98, 14
               

               
Conread position:
               
194-461
               

               
Cow position:
               
chr3:74846589-74846854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
98, 14
               

               
Conread position:
               
195-405
               

               
Cow position:
               
chr3:74900522-74900726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
97, 55
               

               
Conread position:
               
197-340
               

               
Cow position:
               
chr3:25692144-25692004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
197-425
               

               
Cow position:
               
chr3:55984217-55983987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 176
               

               
Conread position:
               
197-512
               

               
Cow position:
               
chr3:66883819-66884135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 99
               

               
Conread position:
               
197-579
               

               
Cow position:
               
chr3:13507587-13507207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 174
               

               
Conread position:
               
197-611
               

               
Cow position:
               
chr3:50763246-50762837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
29, 138
               

               
Conread position:
               
197-614
               

               
Cow position:
               
chr3:72168611-72169012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
36, 45
               

               
Conread position:
               
197-615
               

               
Cow position:
               
chr3:14626031-14626442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 59
               

               
Conread position:
               
197-623
               

               
Cow position:
               
chr3:39171371-39171784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 42
               

               
Conread position:
               
199-623
               

               
Cow position:
               
chr3:80581772-80581371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
256, 91
               

               
Conread position:
               
200-329
               

               
Cow position:
               
chr3:35285159-35285029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
200-441
               

               
Cow position:
               
chr3:10104156-10103924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
161, 0
               

               
Conread position:
               
200-552
               

               
Cow position:
               
chr3:17447499-17447837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
200-586
               

               
Cow position:
               
chr3:67543754-67544137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 54
               

               
Conread position:
               
200-603
               

               
Cow position:
               
chr3:38691290-38691685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 166
               

               
Conread position:
               
200-615
               

               
Cow position:
               
chr3:3738597-3738199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
201-447
               

               
Cow position:
               
chr3:16254726-16254953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
201-516
               

               
Cow position:
               
chr3:49790697-49791011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
93, 154
               

               
Conread position:
               
201-534
               

               
Cow position:
               
chr3:59621533-59621849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 161
               

               
Conread position:
               
201-581
               

               
Cow position:
               
chr3:81470977-81471359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 167
               

               
Conread position:
               
201-613
               

               
Cow position:
               
chr3:14263507-14263102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 55
               

               
Conread position:
               
201-614
               

               
Cow position:
               
chr3:70402011-70401612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 0
               

               
Conread position:
               
202-324
               

               
Cow position:
               
chr3:28556049-28556171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
89, 13
               

               
Conread position:
               
202-370
               

               
Cow position:
               
chr3:64373042-64373210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
89, 159
               

               
Conread position:
               
202-461
               

               
Cow position:
               
chr3:5366880-5366628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
43, 11
               

               
Conread position:
               
202-593
               

               
Cow position:
               
chr3:57624578-57624193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 161
               

               
Conread position:
               
203-369
               

               
Cow position:
               
chr3:21997675-21997843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
48, 54
               

               
Conread position:
               
203-611
               

               
Cow position:
               
chr3:52863070-52863471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 159
               

               
Conread position:
               
203-623
               

               
Cow position:
               
chr3:50069878-50069484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
42, 131
               

               
Conread position:
               
204-493
               

               
Cow position:
               
chr3:26874703-26874415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 117
               

               
Conread position:
               
205-454
               

               
Cow position:
               
chr3:32457302-32457064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
87, 9
               

               
Conread position:
               
206-603
               

               
Cow position:
               
chr3:12711805-12712203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 307
               

               
Conread position:
               
206-614
               

               
Cow position:
               
chr3:53113285-53112877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 50
               

               
Conread position:
               
206-616
               

               
Cow position:
               
chr3:35852358-35852760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 208
               

               
Conread position:
               
207-503
               

               
Cow position:
               
chr3:75687329-75687624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
85, 41
               

               
Conread position:
               
208-363
               

               
Cow position:
               
chr3:3478146-3478302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
7, 86
               

               
Conread position:
               
210-347
               

               
Cow position:
               
chr3:24372028-24371890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
5, 93
               

               
Conread position:
               
210-602
               

               
Cow position:
               
chr3:28908099-28908474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 6
               

               
Conread position:
               
210-629
               

               
Cow position:
               
chr3:59000651-59001050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 5
               

               
Conread position:
               
211-377
               

               
Cow position:
               
chr3:39988136-39988299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
80, 45
               

               
Conread position:
               
211-449
               

               
Cow position:
               
chr3:22510128-22509895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
81, 25
               

               
Conread position:
               
211-454
               

               
Cow position:
               
chr3:72503791-72504036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
211-475
               

               
Cow position:
               
chr3:8733252-8733513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
15, 82
               

               
Conread position:
               
211-481
               

               
Cow position:
               
chr3:84199780-84199515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
39, 13
               

               
Conread position:
               
211-501
               

               
Cow position:
               
chr3:5365781-5365488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 5
               

               
Conread position:
               
211-560
               

               
Cow position:
               
chr3:27940038-27940365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 98
               

               
Conread position:
               
211-581
               

               
Cow position:
               
chr3:80565072-80564702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 138
               

               
Conread position:
               
211-596
               

               
Cow position:
               
chr3:6873147-6873518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 81
               

               
Conread position:
               
211-606
               

               
Cow position:
               
chr3:26681709-26682076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
81, 88
               

               
Conread position:
               
211-611
               

               
Cow position:
               
chr3:67744524-67744916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 16
               

               
Conread position:
               
211-615
               

               
Cow position:
               
chr3:15228717-15229111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 152
               

               
Conread position:
               
211-616
               

               
Cow position:
               
chr3:82019734-82020140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 175
               

               
Conread position:
               
212-495
               

               
Cow position:
               
chr3:43727181-43726902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
58, 39
               

               
Conread position:
               
212-499
               

               
Cow position:
               
chr3:35153721-35153440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
89, 158
               

               
Conread position:
               
212-603
               

               
Cow position:
               
chr3:66292072-66292458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 185
               

               
Conread position:
               
213-446
               

               
Cow position:
               
chr3:73299182-73298958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
21, 90
               

               
Conread position:
               
213-603
               

               
Cow position:
               
chr3:49650492-49650100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 44
               

               
Conread position:
               
213-603
               

               
Cow position:
               
chr3:79292930-79292554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 23
               

               
Conread position:
               
214-346
               

               
Cow position:
               
chr3:35239114-35238982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
78, 48
               

               
Conread position:
               
214-399
               

               
Cow position:
               
chr3:48477934-48478114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
77, 57
               

               
Conread position:
               
214-428
               

               
Cow position:
               
chr3:27727730-27727940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
80, 13
               

               
Conread position:
               
214-517
               

               
Cow position:
               
chr3:57760600-57760299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 157
               

               
Conread position:
               
214-605
               

               
Cow position:
               
chr3:49328048-49327662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 303
               

               
Conread position:
               
214-613
               

               
Cow position:
               
chr3:54739785-54740161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 72
               

               
Conread position:
               
214-614
               

               
Cow position:
               
chr3:56059913-56059516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 300
               

               
Conread position:
               
214-614
               

               
Cow position:
               
chr3:74601216-74600826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
78, 267
               

               
Conread position:
               
214-619
               

               
Cow position:
               
chr3:42480718-42480328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
86, 38
               

               
Conread position:
               
214-620
               

               
Cow position:
               
chr3:73442994-73443383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 60
               

               
Conread position:
               
215-355
               

               
Cow position:
               
chr3:82123446-82123588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
215-361
               

               
Cow position:
               
chr3:10026590-10026731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
79, 73
               

               
Conread position:
               
215-361
               

               
Cow position:
               
chr3:38100244-38100095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
215-374
               

               
Cow position:
               
chr3:71423454-71423612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
147, 76
               

               
Conread position:
               
215-406
               

               
Cow position:
               
chr3:84250443-84250633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
115, 76
               

               
Conread position:
               
215-425
               

               
Cow position:
               
chr3:54290409-54290623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
20, 156
               

               
Conread position:
               
215-486
               

               
Cow position:
               
chr3:24935465-24935203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 24
               

               
Conread position:
               
215-487
               

               
Cow position:
               
chr3:60264615-60264884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
76, 154
               

               
Conread position:
               
215-503
               

               
Cow position:
               
chr3:20677741-20678020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
215-514
               

               
Cow position:
               
chr3:60265153-60265437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
208, 76
               

               
Conread position:
               
215-521
               

               
Cow position:
               
chr3:14599037-14598748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 26
               

               
Conread position:
               
215-537
               

               
Cow position:
               
chr3:59883967-59884293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 272
               

               
Conread position:
               
215-581
               

               
Cow position:
               
chr3:61144199-61143835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 81
               

               
Conread position:
               
215-603
               

               
Cow position:
               
chr3:48296799-48296431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
215-603
               

               
Cow position:
               
chr3:55010063-55010435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
11, 76
               

               
Conread position:
               
215-603
               

               
Cow position:
               
chr3:61279009-61278626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 48
               

               
Conread position:
               
215-607
               

               
Cow position:
               
chr3:67704647-67704256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 163
               

               
Conread position:
               
215-623
               

               
Cow position:
               
chr3:5097307-5096903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 18
               

               
Conread position:
               
215-626
               

               
Cow position:
               
chr3:11987430-11987027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 40
               

               
Conread position:
               
215-626
               

               
Cow position:
               
chr3:80053443-80053838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 21
               

               
Conread position:
               
215-629
               

               
Cow position:
               
chr3:37599326-37599721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 150
               

               
Conread position:
               
215-661
               

               
Cow position:
               
chr3:68707912-68708346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 96
               

               
Conread position:
               
216-365
               

               
Cow position:
               
chr3:57877666-57877515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
216-366
               

               
Cow position:
               
chr3:67959822-67959967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
216-402
               

               
Cow position:
               
chr3:23667720-23667538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
76, 25
               

               
Conread position:
               
216-456
               

               
Cow position:
               
chr3:63177582-63177339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
76, 25
               

               
Conread position:
               
216-503
               

               
Cow position:
               
chr3:22232557-22232837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
76, 23
               

               
Conread position:
               
216-512
               

               
Cow position:
               
chr3:116290-116003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 148
               

               
Conread position:
               
216-571
               

               
Cow position:
               
chr3:43571850-43571492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
13, 35
               

               
Conread position:
               
216-584
               

               
Cow position:
               
chr3:51233995-51234357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 109
               

               
Conread position:
               
216-586
               

               
Cow position:
               
chr3:73461066-73460716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
76, 65
               

               
Conread position:
               
216-614
               

               
Cow position:
               
chr3:82461279-82460892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 159
               

               
Conread position:
               
216-615
               

               
Cow position:
               
chr3:73777369-73776986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
33, 11
               

               
Conread position:
               
216-622
               

               
Cow position:
               
chr3:76387510-76387911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
85, 17
               

               
Conread position:
               
216-624
               

               
Cow position:
               
chr3:70896146-70895746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 20
               

               
Conread position:
               
217-436
               

               
Cow position:
               
chr3:33693918-33693699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
73, 138
               

               
Conread position:
               
218-388
               

               
Cow position:
               
chr3:39247924-39248093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
66, 148
               

               
Conread position:
               
218-459
               

               
Cow position:
               
chr3:20993912-20993670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
19, 73
               

               
Conread position:
               
218-484
               

               
Cow position:
               
chr3:68616232-68616491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
73, 86
               

               
Conread position:
               
218-505
               

               
Cow position:
               
chr3:58767361-58767081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 197
               

               
Conread position:
               
218-605
               

               
Cow position:
               
chr3:73764101-73764475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 74
               

               
Conread position:
               
218-614
               

               
Cow position:
               
chr3:55271947-55272331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 152
               

               
Conread position:
               
219-361
               

               
Cow position:
               
chr3:7428095-7427956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
72, 85
               

               
Conread position:
               
219-474
               

               
Cow position:
               
chr3:32183923-32184177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
7, 51
               

               
Conread position:
               
219-499
               

               
Cow position:
               
chr3:4050290-4050014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 118
               

               
Conread position:
               
219-569
               

               
Cow position:
               
chr3:55835723-55836075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 298
               

               
Conread position:
               
219-613
               

               
Cow position:
               
chr3:29360054-29360425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
220-459
               

               
Cow position:
               
chr3:73237292-73237053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
26, 20
               

               
Conread position:
               
220-623
               

               
Cow position:
               
chr3:17895945-17895554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 49
               

               
Conread position:
               
221-357
               

               
Cow position:
               
chr3:20779380-20779512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
221-625
               

               
Cow position:
               
chr3:62826524-62826924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 156
               

               
Conread position:
               
222-497
               

               
Cow position:
               
chr3:24352954-24352680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
76, 69
               

               
Conread position:
               
222-551
               

               
Cow position:
               
chr3:15192674-15192336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
46, 189
               

               
Conread position:
               
222-603
               

               
Cow position:
               
chr3:79093949-79094350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
136, 125
               

               
Conread position:
               
222-613
               

               
Cow position:
               
chr3:45647774-45647387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 157
               

               
Conread position:
               
222-614
               

               
Cow position:
               
chr3:66707973-66708366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 34
               

               
Conread position:
               
223-370
               

               
Cow position:
               
chr3:20515725-20515872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
69, 139
               

               
Conread position:
               
223-478
               

               
Cow position:
               
chr3:58973388-58973143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
69, 16
               

               
Conread position:
               
223-602
               

               
Cow position:
               
chr3:59451697-59451316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
23, 33
               

               
Conread position:
               
223-603
               

               
Cow position:
               
chr3:34271007-34270651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 33
               

               
Conread position:
               
223-614
               

               
Cow position:
               
chr3:26218960-26219352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 18
               

               
Conread position:
               
223-615
               

               
Cow position:
               
chr3:42423235-42423623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 33
               

               
Conread position:
               
223-619
               

               
Cow position:
               
chr3:8394036-8393643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 156
               

               
Conread position:
               
224-418
               

               
Cow position:
               
chr3:3818874-3818694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
70, 47
               

               
Conread position:
               
224-603
               

               
Cow position:
               
chr3:36671903-36672285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
227, 73
               

               
Conread position:
               
224-614
               

               
Cow position:
               
chr3:29887328-29887715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 57
               

               
Conread position:
               
224-629
               

               
Cow position:
               
chr3:31771777-31771395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
20, 61
               

               
Conread position:
               
225-491
               

               
Cow position:
               
chr3:31850286-31850543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
21, 31
               

               
Conread position:
               
225-548
               

               
Cow position:
               
chr3:26960497-26960820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 139
               

               
Conread position:
               
226-361
               

               
Cow position:
               
chr3:51349913-51349777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
226-593
               

               
Cow position:
               
chr3:8457744-8457386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
72, 52
               

               
Conread position:
               
226-605
               

               
Cow position:
               
chr3:23111422-23111786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
9, 31
               

               
Conread position:
               
227-416
               

               
Cow position:
               
chr3:56483608-56483415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
64, 176
               

               
Conread position:
               
227-454
               

               
Cow position:
               
chr3:61116764-61116994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
21, 29
               

               
Conread position:
               
227-577
               

               
Cow position:
               
chr3:18725555-18725888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
73, 133
               

               
Conread position:
               
227-586
               

               
Cow position:
               
chr3:50614730-50614376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 279
               

               
Conread position:
               
227-597
               

               
Cow position:
               
chr3:50462426-50462068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
11, 31
               

               
Conread position:
               
227-601
               

               
Cow position:
               
chr3:53588295-53588668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 29
               

               
Conread position:
               
227-612
               

               
Cow position:
               
chr3:59588599-59588230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
235, 64
               

               
Conread position:
               
227-616
               

               
Cow position:
               
chr3:45648219-45647844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 64
               

               
Conread position:
               
227-628
               

               
Cow position:
               
chr3:55085081-55085489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 9
               

               
Conread position:
               
227-644
               

               
Cow position:
               
chr3:12255567-12255162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 29
               

               
Conread position:
               
227-645
               

               
Cow position:
               
chr3:64172529-64172122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 138
               

               
Conread position:
               
228-367
               

               
Cow position:
               
chr3:11292160-11292301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
228-503
               

               
Cow position:
               
chr3:53091576-53091315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
9, 28
               

               
Conread position:
               
228-506
               

               
Cow position:
               
chr3:61322928-61322660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
21, 28
               

               
Conread position:
               
228-545
               

               
Cow position:
               
chr3:2198970-2198660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
73, 42
               

               
Conread position:
               
228-596
               

               
Cow position:
               
chr3:525434-525081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 146
               

               
Conread position:
               
228-615
               

               
Cow position:
               
chr3:83815700-83816085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 50
               

               
Conread position:
               
228-623
               

               
Cow position:
               
chr3:10347443-10347054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 67
               

               
Conread position:
               
230-499
               

               
Cow position:
               
chr3:34669647-34669909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 105
               

               
Conread position:
               
230-603
               

               
Cow position:
               
chr3:38347276-38346921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
224, 62
               

               
Conread position:
               
230-614
               

               
Cow position:
               
chr3:59101913-59101544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
221, 61
               

               
Conread position:
               
232-614
               

               
Cow position:
               
chr3:72676175-72675796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 138
               

               
Conread position:
               
233-418
               

               
Cow position:
               
chr3:64135801-64135614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
61, 143
               

               
Conread position:
               
233-540
               

               
Cow position:
               
chr3:83845995-83845687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 15
               

               
Conread position:
               
233-611
               

               
Cow position:
               
chr3:77225204-77224832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
38, 64
               

               
Conread position:
               
233-614
               

               
Cow position:
               
chr3:59799331-59798963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 122
               

               
Conread position:
               
233-616
               

               
Cow position:
               
chr3:51146588-51146959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
132, 45
               

               
Conread position:
               
233-645
               

               
Cow position:
               
chr3:68881039-68881436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 22
               

               
Conread position:
               
234-569
               

               
Cow position:
               
chr3:23444805-23445136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 178
               

               
Conread position:
               
235-603
               

               
Cow position:
               
chr3:61840356-61840009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 77
               

               
Conread position:
               
236-470
               

               
Cow position:
               
chr3:46541749-46541980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 127
               

               
Conread position:
               
236-485
               

               
Cow position:
               
chr3:55109533-55109782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
55, 237
               

               
Conread position:
               
236-503
               

               
Cow position:
               
chr3:74502245-74502507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 138
               

               
Conread position:
               
236-548
               

               
Cow position:
               
chr3:61009361-61009661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
89, 45
               

               
Conread position:
               
236-605
               

               
Cow position:
               
chr3:5374408-5374052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
367, 55
               

               
Conread position:
               
236-616
               

               
Cow position:
               
chr3:54862339-54862717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
199, 19
               

               
Conread position:
               
237-417
               

               
Cow position:
               
chr3:3472119-3471938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
55, 110
               

               
Conread position:
               
237-623
               

               
Cow position:
               
chr3:56298-56669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 72
               

               
Conread position:
               
237-629
               

               
Cow position:
               
chr3:58968824-58969198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 124
               

               
Conread position:
               
238-417
               

               
Cow position:
               
chr3:81277390-81277571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
54, 137
               

               
Conread position:
               
239-645
               

               
Cow position:
               
chr3:27545742-27546155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 54
               

               
Conread position:
               
240-421
               

               
Cow position:
               
chr3:46108894-46108710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
50, 92
               

               
Conread position:
               
240-519
               

               
Cow position:
               
chr3:3638254-3637986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 51
               

               
Conread position:
               
241-553
               

               
Cow position:
               
chr3:76015367-76015069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
60, 50
               

               
Conread position:
               
244-517
               

               
Cow position:
               
chr3:7940485-7940755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 66
               

               
Conread position:
               
244-616
               

               
Cow position:
               
chr3:75711378-75711026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 117
               

               
Conread position:
               
244-645
               

               
Cow position:
               
chr3:71430133-71430528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 11
               

               
Conread position:
               
245-546
               

               
Cow position:
               
chr3:11712036-11711729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 273
               

               
Conread position:
               
245-614
               

               
Cow position:
               
chr3:12287293-12286944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
246-564
               

               
Cow position:
               
chr3:55991799-55992112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
120, 9
               

               
Conread position:
               
246-614
               

               
Cow position:
               
chr3:15684853-15685201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
54, 9
               

               
Conread position:
               
246-614
               

               
Cow position:
               
chr3:58285840-58286189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
250-459
               

               
Cow position:
               
chr3:80468613-80468816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
42, 5
               

               
Conread position:
               
250-513
               

               
Cow position:
               
chr3:78896712-78896454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 5
               

               
Conread position:
               
250-601
               

               
Cow position:
               
chr3:42367449-42367767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
205, 5
               

               
Conread position:
               
253-572
               

               
Cow position:
               
chr3:42584605-42584293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
118, 98
               

               
Conread position:
               
253-603
               

               
Cow position:
               
chr3:68582937-68583282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 12
               

               
Conread position:
               
254-436
               

               
Cow position:
               
chr3:75047985-75047799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
106, 37
               

               
Conread position:
               
254-452
               

               
Cow position:
               
chr3:45897671-45897473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
7, 168
               

               
Conread position:
               
254-452
               

               
Cow position:
               
chr3:45972385-45972583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
7, 168
               

               
Conread position:
               
254-586
               

               
Cow position:
               
chr3:72019178-72018856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 37
               

               
Conread position:
               
255-416
               

               
Cow position:
               
chr3:12670554-12670714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
255-536
               

               
Cow position:
               
chr3:10896883-10896615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
37, 115
               

               
Conread position:
               
255-616
               

               
Cow position:
               
chr3:20471304-20471649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
46, 28
               

               
Conread position:
               
255-622
               

               
Cow position:
               
chr3:26553654-26554007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
37, 88
               

               
Conread position:
               
255-623
               

               
Cow position:
               
chr3:20437595-20437943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 105
               

               
Conread position:
               
255-623
               

               
Cow position:
               
chr3:73759456-73759819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 108
               

               
Conread position:
               
256-531
               

               
Cow position:
               
chr3:55778096-55777825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
42, 22
               

               
Conread position:
               
256-609
               

               
Cow position:
               
chr3:36100897-36100542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 22
               

               
Conread position:
               
256-625
               

               
Cow position:
               
chr3:23091916-23092290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 22
               

               
Conread position:
               
256-643
               

               
Cow position:
               
chr3:63147090-63147465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
37, 178
               

               
Conread position:
               
257-497
               

               
Cow position:
               
chr3:81359048-81359292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
35, 105
               

               
Conread position:
               
257-611
               

               
Cow position:
               
chr3:49139990-49140335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
106, 34
               

               
Conread position:
               
258-573
               

               
Cow position:
               
chr3:74878531-74878839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 116
               

               
Conread position:
               
260-561
               

               
Cow position:
               
chr3:34937900-34937602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 52
               

               
Conread position:
               
261-603
               

               
Cow position:
               
chr3:81277637-81277984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 109
               

               
Conread position:
               
262-521
               

               
Cow position:
               
chr3:34556186-34556440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
117, 29
               

               
Conread position:
               
262-613
               

               
Cow position:
               
chr3:66609790-66610128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 62
               

               
Conread position:
               
263-616
               

               
Cow position:
               
chr3:46350724-46350363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 22
               

               
Conread position:
               
264-625
               

               
Cow position:
               
chr3:80818769-80818433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
28, 110
               

               
Conread position:
               
264-626
               

               
Cow position:
               
chr3:65800637-65800291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 27
               

               
Conread position:
               
265-540
               

               
Cow position:
               
chr3:25945144-25944860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
27, 259
               

               
Conread position:
               
265-585
               

               
Cow position:
               
chr3:74620944-74621259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 30
               

               
Conread position:
               
265-603
               

               
Cow position:
               
chr3:31206927-31206592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 99
               

               
Conread position:
               
265-603
               

               
Cow position:
               
chr3:59366604-59366267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
27, 16
               

               
Conread position:
               
265-615
               

               
Cow position:
               
chr3:61857557-61857204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 42
               

               
Conread position:
               
265-625
               

               
Cow position:
               
chr3:22089226-22089585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 105
               

               
Conread position:
               
266-505
               

               
Cow position:
               
chr3:79270907-79271146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
22, 99
               

               
Conread position:
               
266-607
               

               
Cow position:
               
chr3:69750661-69750985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 95
               

               
Conread position:
               
266-613
               

               
Cow position:
               
chr3:79148235-79148566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 90
               

               
Conread position:
               
266-626
               

               
Cow position:
               
chr3:75727532-75727893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
35, 12
               

               
Conread position:
               
267-492
               

               
Cow position:
               
chr3:58960539-58960763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
188, 24
               

               
Conread position:
               
267-551
               

               
Cow position:
               
chr3:21547052-21547330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
25, 7
               

               
Conread position:
               
267-616
               

               
Cow position:
               
chr3:13686300-13685961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
43, 15
               

               
Conread position:
               
269-547
               

               
Cow position:
               
chr3:56612414-56612132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
23, 112
               

               
Conread position:
               
271-533
               

               
Cow position:
               
chr3:56523401-56523642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
271-548
               

               
Cow position:
               
chr3:56301313-56301573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
276-580
               

               
Cow position:
               
chr3:22820611-22820312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 237
               

               
Conread position:
               
276-580
               

               
Cow position:
               
chr3:61171467-61171767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
8, 97
               

               
Conread position:
               
276-603
               

               
Cow position:
               
chr3:19708068-19708379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 15
               

               
Conread position:
               
276-603
               

               
Cow position:
               
chr3:83921224-83920918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 15
               

               
Conread position:
               
276-607
               

               
Cow position:
               
chr3:37186867-37186552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
24, 80
               

               
Conread position:
               
278-614
               

               
Cow position:
               
chr3:33698769-33698430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 92
               

               
Conread position:
               
279-546
               

               
Cow position:
               
chr3:6772555-6772821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
13, 78
               

               
Conread position:
               
283-459
               

               
Cow position:
               
chr3:80953680-80953505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
283-597
               

               
Cow position:
               
chr3:43528199-43528511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 165
               

               
Conread position:
               
286-577
               

               
Cow position:
               
chr3:41328471-41328201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
14, 42
               

               
Conread position:
               
290-563
               

               
Cow position:
               
chr3:83201499-83201768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 79
               

               
Conread position:
               
291-537
               

               
Cow position:
               
chr3:35005800-35005563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
172, 72
               

               
Conread position:
               
293-544
               

               
Cow position:
               
chr3:22907706-22907938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
293-607
               

               
Cow position:
               
chr3:21340939-21341247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 27
               

               
Conread position:
               
294-614
               

               
Cow position:
               
chr3:48530654-48530347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
152, 28
               

               
Conread position:
               
295-613
               

               
Cow position:
               
chr3:27544316-27544619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
20, 33
               

               
Conread position:
               
298-582
               

               
Cow position:
               
chr3:14625373-14625647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
75, 57
               

               
Conread position:
               
298-605
               

               
Cow position:
               
chr3:5416203-5416513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 100
               

               
Conread position:
               
299-486
               

               
Cow position:
               
chr3:15992734-15992546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
299-516
               

               
Cow position:
               
chr3:70632037-70631820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
28, 104
               

               
Conread position:
               
299-537
               

               
Cow position:
               
chr3:39328416-39328186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
63, 187
               

               
Conread position:
               
299-578
               

               
Cow position:
               
chr3:52650511-52650788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
13, 76
               

               
Conread position:
               
299-614
               

               
Cow position:
               
chr3:5850913-5851218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 76
               

               
Conread position:
               
299-614
               

               
Cow position:
               
chr3:45524283-45523973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
157, 64
               

               
Conread position:
               
299-621
               

               
Cow position:
               
chr3:74699366-74699693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
59, 51
               

               
Conread position:
               
300-590
               

               
Cow position:
               
chr3:19751875-19752159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
160, 87
               

               
Conread position:
               
303-485
               

               
Cow position:
               
chr3:28478105-28477921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
65, 146
               

               
Conread position:
               
303-629
               

               
Cow position:
               
chr3:80081801-80082122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
60, 187
               

               
Conread position:
               
305-449
               

               
Cow position:
               
chr3:54551872-54552012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
305-478
               

               
Cow position:
               
chr3:9638363-9638531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
57, 66
               

               
Conread position:
               
305-605
               

               
Cow position:
               
chr3:74409496-74409213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
12, 179
               

               
Conread position:
               
305-614
               

               
Cow position:
               
chr3:49218304-49218598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 64
               

               
Conread position:
               
306-486
               

               
Cow position:
               
chr3:23037611-23037798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
306-548
               

               
Cow position:
               
chr3:66866392-66866625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
78, 31
               

               
Conread position:
               
306-552
               

               
Cow position:
               
chr3:55106430-55106672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 63
               

               
Conread position:
               
306-603
               

               
Cow position:
               
chr3:42178166-42177880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 33
               

               
Conread position:
               
306-603
               

               
Cow position:
               
chr3:75057121-75057394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
59, 105
               

               
Conread position:
               
306-613
               

               
Cow position:
               
chr3:8147658-8147953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
148, 55
               

               
Conread position:
               
306-615
               

               
Cow position:
               
chr3:69849498-69849794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 57
               

               
Conread position:
               
306-621
               

               
Cow position:
               
chr3:48629580-48629882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
61, 67
               

               
Conread position:
               
306-626
               

               
Cow position:
               
chr3:29807476-29807159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 58
               

               
Conread position:
               
307-467
               

               
Cow position:
               
chr3:28323186-28323036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
307-537
               

               
Cow position:
               
chr3:46292622-46292848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
153, 12
               

               
Conread position:
               
307-548
               

               
Cow position:
               
chr3:49627352-49627588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
153, 56
               

               
Conread position:
               
307-593
               

               
Cow position:
               
chr3:5899835-5899556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
11, 60
               

               
Conread position:
               
307-601
               

               
Cow position:
               
chr3:56703841-56704132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
10, 76
               

               
Conread position:
               
307-607
               

               
Cow position:
               
chr3:50258852-50259153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
153, 67
               

               
Conread position:
               
308-603
               

               
Cow position:
               
chr3:59515111-59514831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
308-613
               

               
Cow position:
               
chr3:56637672-56637376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
310-593
               

               
Cow position:
               
chr3:84000618-84000342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 59
               

               
Conread position:
               
311-511
               

               
Cow position:
               
chr3:8790590-8790784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
139, 50
               

               
Conread position:
               
311-517
               

               
Cow position:
               
chr3:74205800-74206009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
311-590
               

               
Cow position:
               
chr3:17450935-17451201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 63
               

               
Conread position:
               
311-592
               

               
Cow position:
               
chr3:7365884-7366142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
311-595
               

               
Cow position:
               
chr3:8924050-8923773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
35, 27
               

               
Conread position:
               
311-603
               

               
Cow position:
               
chr3:22171195-22170909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
59, 178
               

               
Conread position:
               
311-614
               

               
Cow position:
               
chr3:54960193-54959900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 15
               

               
Conread position:
               
311-614
               

               
Cow position:
               
chr3:66597748-66598045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
149, 52
               

               
Conread position:
               
311-615
               

               
Cow position:
               
chr3:48269869-48269571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 112
               

               
Conread position:
               
311-619
               

               
Cow position:
               
chr3:9843591-9843288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 52
               

               
Conread position:
               
312-499
               

               
Cow position:
               
chr3:83707970-83708149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
143, 51
               

               
Conread position:
               
312-572
               

               
Cow position:
               
chr3:16362732-16362987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
148, 62
               

               
Conread position:
               
312-596
               

               
Cow position:
               
chr3:79207983-79208276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 119
               

               
Conread position:
               
314-543
               

               
Cow position:
               
chr3:15859665-15859891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
314-604
               

               
Cow position:
               
chr3:49337727-49337453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
15, 7
               

               
Conread position:
               
315-603
               

               
Cow position:
               
chr3:59206243-59205961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
119, 40
               

               
Conread position:
               
315-609
               

               
Cow position:
               
chr3:6078328-6078621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
145, 54
               

               
Conread position:
               
315-619
               

               
Cow position:
               
chr3:58174909-58174615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
41, 61
               

               
Conread position:
               
315-624
               

               
Cow position:
               
chr3:364212-364520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 45
               

               
Conread position:
               
316-548
               

               
Cow position:
               
chr3:47524507-47524734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
118, 33
               

               
Conread position:
               
316-596
               

               
Cow position:
               
chr3:48923522-48923786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
316-606
               

               
Cow position:
               
chr3:12669084-12668796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
9, 17
               

               
Conread position:
               
316-612
               

               
Cow position:
               
chr3:69961716-69962000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
25, 56
               

               
Conread position:
               
317-459
               

               
Cow position:
               
chr3:15790553-15790419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
317-486
               

               
Cow position:
               
chr3:53192428-53192590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
317-491
               

               
Cow position:
               
chr3:15232029-15231857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
23, 46
               

               
Conread position:
               
317-581
               

               
Cow position:
               
chr3:28692431-28692688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 79
               

               
Conread position:
               
318-614
               

               
Cow position:
               
chr3:11020115-11019827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 49
               

               
Conread position:
               
319-602
               

               
Cow position:
               
chr3:42483904-42483621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 57
               

               
Conread position:
               
319-614
               

               
Cow position:
               
chr3:57553852-57554138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 53
               

               
Conread position:
               
319-619
               

               
Cow position:
               
chr3:44622890-44623193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 52
               

               
Conread position:
               
320-477
               

               
Cow position:
               
chr3:18056434-18056284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
320-603
               

               
Cow position:
               
chr3:17952652-17952376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 11
               

               
Conread position:
               
321-459
               

               
Cow position:
               
chr3:1534622-1534761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
321-615
               

               
Cow position:
               
chr3:70333487-70333765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
148, 40
               

               
Conread position:
               
322-497
               

               
Cow position:
               
chr3:59271536-59271362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
61, 41
               

               
Conread position:
               
322-513
               

               
Cow position:
               
chr3:61024308-61024499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
133, 49
               

               
Conread position:
               
322-548
               

               
Cow position:
               
chr3:21050844-21051063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
138, 52
               

               
Conread position:
               
322-603
               

               
Cow position:
               
chr3:63860896-63861181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 85
               

               
Conread position:
               
322-605
               

               
Cow position:
               
chr3:82657094-82657367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 30
               

               
Conread position:
               
322-609
               

               
Cow position:
               
chr3:30418129-30417843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
43, 159
               

               
Conread position:
               
322-614
               

               
Cow position:
               
chr3:3164502-3164787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 51
               

               
Conread position:
               
322-614
               

               
Cow position:
               
chr3:41366987-41367274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 134
               

               
Conread position:
               
323-537
               

               
Cow position:
               
chr3:25060072-25059859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
140, 48
               

               
Conread position:
               
323-580
               

               
Cow position:
               
chr3:44534767-44535022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
125, 46
               

               
Conread position:
               
323-614
               

               
Cow position:
               
chr3:61678697-61678400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
40, 177
               

               
Conread position:
               
324-457
               

               
Cow position:
               
chr3:76169293-76169424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
325-576
               

               
Cow position:
               
chr3:49787404-49787153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
130, 49
               

               
Conread position:
               
325-603
               

               
Cow position:
               
chr3:81474002-81473724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
36, 13
               

               
Conread position:
               
326-468
               

               
Cow position:
               
chr3:6900618-6900482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
326-480
               

               
Cow position:
               
chr3:27247200-27247351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
326-584
               

               
Cow position:
               
chr3:73590005-73590259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 195
               

               
Conread position:
               
326-593
               

               
Cow position:
               
chr3:81940247-81939981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 49
               

               
Conread position:
               
326-603
               

               
Cow position:
               
chr3:19789125-19789399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 37
               

               
Conread position:
               
327-602
               

               
Cow position:
               
chr3:49731651-49731916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 44
               

               
Conread position:
               
327-623
               

               
Cow position:
               
chr3:30701298-30701022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
38, 130
               

               
Conread position:
               
328-606
               

               
Cow position:
               
chr3:77496816-77496534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 57
               

               
Conread position:
               
329-614
               

               
Cow position:
               
chr3:7858359-7858061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
16, 36
               

               
Conread position:
               
330-537
               

               
Cow position:
               
chr3:3062553-3062348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
35, 157
               

               
Conread position:
               
330-562
               

               
Cow position:
               
chr3:59885378-59885134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
330-586
               

               
Cow position:
               
chr3:2903308-2903553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
35, 119
               

               
Conread position:
               
330-616
               

               
Cow position:
               
chr3:45313035-45312761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
126, 13
               

               
Conread position:
               
331-542
               

               
Cow position:
               
chr3:55062887-55063087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
124, 32
               

               
Conread position:
               
332-499
               

               
Cow position:
               
chr3:16891295-16891117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
32, 118
               

               
Conread position:
               
332-507
               

               
Cow position:
               
chr3:27212347-27212173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
154, 0
               

               
Conread position:
               
332-605
               

               
Cow position:
               
chr3:67161927-67161650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 37
               

               
Conread position:
               
333-581
               

               
Cow position:
               
chr3:4087177-4087424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
33, 162
               

               
Conread position:
               
334-581
               

               
Cow position:
               
chr3:8604037-8604272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
334-614
               

               
Cow position:
               
chr3:25691732-25691458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 28
               

               
Conread position:
               
339-582
               

               
Cow position:
               
chr3:45307912-45307675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
38, 21
               

               
Conread position:
               
340-589
               

               
Cow position:
               
chr3:49455213-49454969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
115, 29
               

               
Conread position:
               
340-614
               

               
Cow position:
               
chr3:7408463-7408192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
120, 22
               

               
Conread position:
               
341-502
               

               
Cow position:
               
chr3:34294308-34294469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
342-603
               

               
Cow position:
               
chr3:15661728-15661981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
113, 21
               

               
Conread position:
               
343-613
               

               
Cow position:
               
chr3:58951587-58951331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
120, 20
               

               
Conread position:
               
343-614
               

               
Cow position:
               
chr3:61190952-61191208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
346-602
               

               
Cow position:
               
chr3:42588329-42588070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 148
               

               
Conread position:
               
347-596
               

               
Cow position:
               
chr3:19198647-19198408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
50, 64
               

               
Conread position:
               
349-497
               

               
Cow position:
               
chr3:78739824-78739676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
37, 14
               

               
Conread position:
               
360-616
               

               
Cow position:
               
chr3:43657752-43658004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
204, 19
               

               
Conread position:
               
361-614
               

               
Cow position:
               
chr3:66978792-66978552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
362-619
               

               
Cow position:
               
chr3:81401351-81401595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
375-590
               

               
Cow position:
               
chr3:34079989-34079772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
7, 143
               

               
Conread position:
               
375-603
               

               
Cow position:
               
chr3:56704601-56704817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
375-611
               

               
Cow position:
               
chr3:6853562-6853788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
80, 114
               

               
Conread position:
               
375-614
               

               
Cow position:
               
chr3:31903171-31903399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
88, 55
               

               
Conread position:
               
377-614
               

               
Cow position:
               
chr3:6863681-6863916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
83, 10
               

               
Conread position:
               
379-555
               

               
Cow position:
               
chr3:23215633-23215816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
84, 140
               

               
Conread position:
               
380-581
               

               
Cow position:
               
chr3:54881698-54881498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
54, 112
               

               
Conread position:
               
380-613
               

               
Cow position:
               
chr3:38497881-38497662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
380-614
               

               
Cow position:
               
chr3:22872109-22872343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 129
               

               
Conread position:
               
380-619
               

               
Cow position:
               
chr3:15057671-15057894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
381-582
               

               
Cow position:
               
chr3:18558108-18557925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
383-603
               

               
Cow position:
               
chr3:26894596-26894388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
384-612
               

               
Cow position:
               
chr3:66116177-66116401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
50, 139
               

               
Conread position:
               
384-614
               

               
Cow position:
               
chr3:4223247-4223024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
187, 62
               

               
Conread position:
               
384-614
               

               
Cow position:
               
chr3:33632958-33633177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
384-616
               

               
Cow position:
               
chr3:34316024-34316257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
45, 132
               

               
Conread position:
               
385-565
               

               
Cow position:
               
chr3:35074614-35074439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
385-579
               

               
Cow position:
               
chr3:23270031-23269846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
69, 123
               

               
Conread position:
               
385-613
               

               
Cow position:
               
chr3:15955483-15955254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
66, 130
               

               
Conread position:
               
386-501
               

               
Cow position:
               
chr3:13241268-13241385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
386-548
               

               
Cow position:
               
chr3:61361338-61361183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
70, 111
               

               
Conread position:
               
386-627
               

               
Cow position:
               
chr3:23277611-23277850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
77, 20
               

               
Conread position:
               
387-620
               

               
Cow position:
               
chr3:42603761-42603533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
148, 46
               

               
Conread position:
               
389-614
               

               
Cow position:
               
chr3:46506875-46506649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
69, 128
               

               
Conread position:
               
390-614
               

               
Cow position:
               
chr3:14453757-14453536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
70, 88
               

               
Conread position:
               
390-614
               

               
Cow position:
               
chr3:16380645-16380868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
390-614
               

               
Cow position:
               
chr3:33124160-33124383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
73, 123
               

               
Conread position:
               
390-614
               

               
Cow position:
               
chr3:40689025-40689245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
70, 125
               

               
Conread position:
               
390-614
               

               
Cow position:
               
chr3:42452442-42452219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
70, 93
               

               
Conread position:
               
390-614
               

               
Cow position:
               
chr3:78111043-78110822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
71, 123
               

               
Conread position:
               
390-619
               

               
Cow position:
               
chr3:18855023-18854797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
66, 127
               

               
Conread position:
               
391-603
               

               
Cow position:
               
chr3:11640360-11640154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
44, 94
               

               
Conread position:
               
392-614
               

               
Cow position:
               
chr3:8159880-8159664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
68, 103
               

               
Conread position:
               
393-652
               

               
Cow position:
               
chr3:51609746-51609486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 122
               

               
Conread position:
               
394-517
               

               
Cow position:
               
chr3:30357325-30357448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
81, 29
               

               
Conread position:
               
396-561
               

               
Cow position:
               
chr3:4861609-4861451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
403-603
               

               
Cow position:
               
chr3:36656854-36657050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
58, 117
               

               
Conread position:
               
404-603
               

               
Cow position:
               
chr3:34392183-34392376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
405-571
               

               
Cow position:
               
chr3:78067220-78067386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
53, 107
               

               
Conread position:
               
424-613
               

               
Cow position:
               
chr3:58158569-58158754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
87, 0
               
Show alignments to all cow chromosomes.