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Cow genome map

           
Conread name:
           
Pig4-TMW8001P16
        

               
Conread position:
               
1-142
               

               
Cow position:
               
chr1:3872615-3872758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
1-142
               

               
Cow position:
               
chr1:58439282-58439143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
13, 23
               

               
Conread position:
               
1-144
               

               
Cow position:
               
chr1:61304445-61304590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
1-148
               

               
Cow position:
               
chr1:54484832-54484982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
36, 113
               

               
Conread position:
               
1-159
               

               
Cow position:
               
chr1:24201975-24201823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
11, 67
               

               
Conread position:
               
1-160
               

               
Cow position:
               
chr1:99222067-99221902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
1-169
               

               
Cow position:
               
chr1:3757716-3757890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
1-172
               

               
Cow position:
               
chr1:33716985-33717165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
1-172
               

               
Cow position:
               
chr1:74013503-74013322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
1-177
               

               
Cow position:
               
chr1:55686455-55686275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
13, 37
               

               
Conread position:
               
1-179
               

               
Cow position:
               
chr1:99118149-99118333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
11, 170
               

               
Conread position:
               
1-181
               

               
Cow position:
               
chr1:69445136-69445310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
36, 48
               

               
Conread position:
               
1-181
               

               
Cow position:
               
chr1:84786535-84786721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
36, 143
               

               
Conread position:
               
1-182
               

               
Cow position:
               
chr1:21092855-21093039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
16, 101
               

               
Conread position:
               
1-182
               

               
Cow position:
               
chr1:59192881-59192692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
1-182
               

               
Cow position:
               
chr1:98380813-98380625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
12, 105
               

               
Conread position:
               
1-185
               

               
Cow position:
               
chr1:44136698-44136516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
6, 97
               

               
Conread position:
               
1-190
               

               
Cow position:
               
chr1:30504235-30504427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
36, 104
               

               
Conread position:
               
1-191
               

               
Cow position:
               
chr1:4026949-4027149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
36, 29
               

               
Conread position:
               
1-192
               

               
Cow position:
               
chr1:24528834-24528651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
36, 79
               

               
Conread position:
               
1-199
               

               
Cow position:
               
chr1:37646237-37646038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
13, 75
               

               
Conread position:
               
1-200
               

               
Cow position:
               
chr1:97806556-97806754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
13, 46
               

               
Conread position:
               
1-204
               

               
Cow position:
               
chr1:14379766-14379564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
21, 51
               

               
Conread position:
               
1-206
               

               
Cow position:
               
chr1:81472643-81472845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
21, 81
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr1:732161-731969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
13, 91
               

               
Conread position:
               
1-208
               

               
Cow position:
               
chr1:20125374-20125587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
8, 95
               

               
Conread position:
               
1-219
               

               
Cow position:
               
chr1:20287881-20288104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
38, 16
               

               
Conread position:
               
1-223
               

               
Cow position:
               
chr1:5394106-5393882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
40, 84
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr1:96184244-96184016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
8, 58
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr1:5873207-5872963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
36, 194
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr1:41004603-41004356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
9, 28
               

               
Conread position:
               
1-242
               

               
Cow position:
               
chr1:34000669-34000916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
8, 213
               

               
Conread position:
               
1-249
               

               
Cow position:
               
chr1:75967200-75967443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 76
               

               
Conread position:
               
1-250
               

               
Cow position:
               
chr1:19998271-19998029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 142
               

               
Conread position:
               
1-252
               

               
Cow position:
               
chr1:12596137-12595886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
13, 42
               

               
Conread position:
               
1-253
               

               
Cow position:
               
chr1:4589717-4589460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
6, 66
               

               
Conread position:
               
1-254
               

               
Cow position:
               
chr1:94403980-94404231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
19, 80
               

               
Conread position:
               
1-256
               

               
Cow position:
               
chr1:71946606-71946351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
39, 77
               

               
Conread position:
               
1-257
               

               
Cow position:
               
chr1:24655724-24655978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 22
               

               
Conread position:
               
1-259
               

               
Cow position:
               
chr1:33811698-33811952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 72
               

               
Conread position:
               
1-259
               

               
Cow position:
               
chr1:58419696-58419958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
20, 229
               

               
Conread position:
               
1-260
               

               
Cow position:
               
chr1:71818698-71818439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
12, 216
               

               
Conread position:
               
1-261
               

               
Cow position:
               
chr1:666124-666390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
7, 95
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chr1:5409850-5409590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
14, 99
               

               
Conread position:
               
1-266
               

               
Cow position:
               
chr1:11770529-11770263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 191
               

               
Conread position:
               
1-267
               

               
Cow position:
               
chr1:84239343-84239079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 91
               

               
Conread position:
               
1-270
               

               
Cow position:
               
chr1:22745391-22745658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
27, 14
               

               
Conread position:
               
1-271
               

               
Cow position:
               
chr1:30034310-30034567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
14, 30
               

               
Conread position:
               
1-272
               

               
Cow position:
               
chr1:13056764-13056493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
36, 79
               

               
Conread position:
               
1-272
               

               
Cow position:
               
chr1:57264222-57263957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 74
               

               
Conread position:
               
1-273
               

               
Cow position:
               
chr1:84240664-84240929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 82
               

               
Conread position:
               
1-275
               

               
Cow position:
               
chr1:3244614-3244889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 137
               

               
Conread position:
               
1-276
               

               
Cow position:
               
chr1:12871243-12870970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 60
               

               
Conread position:
               
1-276
               

               
Cow position:
               
chr1:22448820-22448542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 13
               

               
Conread position:
               
1-276
               

               
Cow position:
               
chr1:43380265-43379985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 152
               

               
Conread position:
               
1-276
               

               
Cow position:
               
chr1:73561886-73561608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 175
               

               
Conread position:
               
1-278
               

               
Cow position:
               
chr1:77462129-77462404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
36, 48
               

               
Conread position:
               
1-279
               

               
Cow position:
               
chr1:1801908-1802180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
36, 15
               

               
Conread position:
               
1-280
               

               
Cow position:
               
chr1:57635231-57635505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 89
               

               
Conread position:
               
1-282
               

               
Cow position:
               
chr1:45535466-45535752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 21
               

               
Conread position:
               
1-287
               

               
Cow position:
               
chr1:52329765-52329468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
6, 99
               

               
Conread position:
               
1-292
               

               
Cow position:
               
chr1:100770972-100770697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
36, 13
               

               
Conread position:
               
1-295
               

               
Cow position:
               
chr1:44155026-44155308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
10, 72
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr1:83082766-83083067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
6, 28
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr1:61724261-61723958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 76
               

               
Conread position:
               
1-299
               

               
Cow position:
               
chr1:3323622-3323930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 71
               

               
Conread position:
               
1-299
               

               
Cow position:
               
chr1:57639756-57639453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 122
               

               
Conread position:
               
1-300
               

               
Cow position:
               
chr1:60032834-60032536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 24
               

               
Conread position:
               
1-302
               

               
Cow position:
               
chr1:32341443-32341144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
36, 155
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr1:82884621-82884322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 16
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr1:6103149-6102832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
13, 39
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr1:42256746-42256431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
14, 207
               

               
Conread position:
               
1-309
               

               
Cow position:
               
chr1:6200333-6200647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
14, 205
               

               
Conread position:
               
1-309
               

               
Cow position:
               
chr1:13614955-13614661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
6, 53
               

               
Conread position:
               
1-309
               

               
Cow position:
               
chr1:26811035-26810725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
14, 62
               

               
Conread position:
               
1-309
               

               
Cow position:
               
chr1:30531010-30530699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
14, 33
               

               
Conread position:
               
1-309
               

               
Cow position:
               
chr1:32562514-32562201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
14, 201
               

               
Conread position:
               
1-309
               

               
Cow position:
               
chr1:46354676-46354988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
14, 212
               

               
Conread position:
               
1-309
               

               
Cow position:
               
chr1:52354651-52354338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
14, 196
               

               
Conread position:
               
1-309
               

               
Cow position:
               
chr1:52754378-52754065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
14, 201
               

               
Conread position:
               
1-309
               

               
Cow position:
               
chr1:55158046-55157733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
14, 196
               

               
Conread position:
               
1-309
               

               
Cow position:
               
chr1:57525052-57524745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
14, 72
               

               
Conread position:
               
1-309
               

               
Cow position:
               
chr1:60707167-60707475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
6, 168
               

               
Conread position:
               
1-309
               

               
Cow position:
               
chr1:68600759-68600446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
23, 196
               

               
Conread position:
               
1-309
               

               
Cow position:
               
chr1:85151415-85151109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
14, 84
               

               
Conread position:
               
1-309
               

               
Cow position:
               
chr1:94211998-94212299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 187
               

               
Conread position:
               
1-309
               

               
Cow position:
               
chr1:96478459-96478772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 71
               

               
Conread position:
               
1-309
               

               
Cow position:
               
chr1:99837322-99837013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
14, 193
               

               
Conread position:
               
1-309
               

               
Cow position:
               
chr1:100421607-100421897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
13, 64
               

               
Conread position:
               
1-309
               

               
Cow position:
               
chr1:101915933-101916238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
37, 13
               

               
Conread position:
               
1-309
               

               
Cow position:
               
chr1:102430032-102429718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
14, 197
               

               
Conread position:
               
1-309
               

               
Cow position:
               
chr1:102519432-102519728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
37, 56
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chr1:51769849-51770167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
14, 57
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chr1:71257719-71257391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
13, 218
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chr1:79590864-79591173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 232
               

               
Conread position:
               
1-313
               

               
Cow position:
               
chr1:102784724-102785030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
10, 101
               

               
Conread position:
               
1-314
               

               
Cow position:
               
chr1:46218347-46218650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 75
               

               
Conread position:
               
1-317
               

               
Cow position:
               
chr1:6166015-6166320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
16, 73
               

               
Conread position:
               
1-317
               

               
Cow position:
               
chr1:41696821-41697135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 13
               

               
Conread position:
               
1-317
               

               
Cow position:
               
chr1:89742248-89741915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 207
               

               
Conread position:
               
1-318
               

               
Cow position:
               
chr1:1981346-1981032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 80
               

               
Conread position:
               
1-318
               

               
Cow position:
               
chr1:4374574-4374256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 117
               

               
Conread position:
               
1-318
               

               
Cow position:
               
chr1:31765631-31765292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 15
               

               
Conread position:
               
1-318
               

               
Cow position:
               
chr1:46693892-46693573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
13, 175
               

               
Conread position:
               
1-318
               

               
Cow position:
               
chr1:48444418-48444113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 67
               

               
Conread position:
               
1-318
               

               
Cow position:
               
chr1:61392027-61391708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 50
               

               
Conread position:
               
1-318
               

               
Cow position:
               
chr1:63240711-63241054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
12, 23
               

               
Conread position:
               
1-318
               

               
Cow position:
               
chr1:63596296-63595973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 195
               

               
Conread position:
               
1-318
               

               
Cow position:
               
chr1:71079189-71078879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
38, 13
               

               
Conread position:
               
1-318
               

               
Cow position:
               
chr1:83982613-83982299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
22, 208
               

               
Conread position:
               
1-319
               

               
Cow position:
               
chr1:28176764-28177086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 215
               

               
Conread position:
               
1-319
               

               
Cow position:
               
chr1:36931923-36932236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 75
               

               
Conread position:
               
1-319
               

               
Cow position:
               
chr1:51445643-51445968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 258
               

               
Conread position:
               
1-319
               

               
Cow position:
               
chr1:51531537-51531833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 63
               

               
Conread position:
               
1-319
               

               
Cow position:
               
chr1:55146565-55146880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 117
               

               
Conread position:
               
1-319
               

               
Cow position:
               
chr1:56477359-56477674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 78
               

               
Conread position:
               
1-319
               

               
Cow position:
               
chr1:64251285-64250970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
36, 13
               

               
Conread position:
               
1-319
               

               
Cow position:
               
chr1:78810800-78811120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
42, 193
               

               
Conread position:
               
1-319
               

               
Cow position:
               
chr1:78857558-78857247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 157
               

               
Conread position:
               
1-319
               

               
Cow position:
               
chr1:81355939-81355621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 98
               

               
Conread position:
               
1-319
               

               
Cow position:
               
chr1:92437227-92436908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 152
               

               
Conread position:
               
1-319
               

               
Cow position:
               
chr1:97954684-97954386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
36, 80
               

               
Conread position:
               
1-319
               

               
Cow position:
               
chr1:99609130-99609450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 220
               

               
Conread position:
               
1-320
               

               
Cow position:
               
chr1:874407-874737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 56
               

               
Conread position:
               
1-320
               

               
Cow position:
               
chr1:2075564-2075268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
11, 71
               

               
Conread position:
               
1-320
               

               
Cow position:
               
chr1:7442749-7443059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
14, 21
               

               
Conread position:
               
1-320
               

               
Cow position:
               
chr1:31934277-31934590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 66
               

               
Conread position:
               
1-320
               

               
Cow position:
               
chr1:33719878-33720184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 216
               

               
Conread position:
               
1-320
               

               
Cow position:
               
chr1:34300784-34300468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 99
               

               
Conread position:
               
1-320
               

               
Cow position:
               
chr1:74084425-74084108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 13
               

               
Conread position:
               
1-320
               

               
Cow position:
               
chr1:87888166-87888468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
13, 39
               

               
Conread position:
               
1-320
               

               
Cow position:
               
chr1:102756655-102756350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
123, 38
               

               
Conread position:
               
1-322
               

               
Cow position:
               
chr1:43822141-43822484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
36, 235
               

               
Conread position:
               
1-323
               

               
Cow position:
               
chr1:24534479-24534171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 76
               

               
Conread position:
               
1-323
               

               
Cow position:
               
chr1:35162168-35162496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 223
               

               
Conread position:
               
1-323
               

               
Cow position:
               
chr1:57900977-57900638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 158
               

               
Conread position:
               
1-323
               

               
Cow position:
               
chr1:90640789-90641114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 281
               

               
Conread position:
               
1-323
               

               
Cow position:
               
chr1:95215422-95215104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 215
               

               
Conread position:
               
1-323
               

               
Cow position:
               
chr1:101713880-101714203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
12, 149
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chr1:42555034-42555354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 69
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chr1:44506732-44507061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 30
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chr1:44769346-44769021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 15
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chr1:51394183-51394506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 103
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chr1:53458469-53458783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
22, 89
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chr1:67821446-67821135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
13, 110
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chr1:69539463-69539779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 48
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chr1:70538367-70538699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 216
               

               
Conread position:
               
1-327
               

               
Cow position:
               
chr1:68951395-68951715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 76
               

               
Conread position:
               
1-330
               

               
Cow position:
               
chr1:53622729-53623049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 29
               

               
Conread position:
               
1-331
               

               
Cow position:
               
chr1:72141328-72141671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 83
               

               
Conread position:
               
1-334
               

               
Cow position:
               
chr1:39427217-39426908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 88
               

               
Conread position:
               
1-334
               

               
Cow position:
               
chr1:45289109-45288774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 24
               

               
Conread position:
               
1-334
               

               
Cow position:
               
chr1:68827141-68826815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 212
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr1:19465826-19466152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 85
               

               
Conread position:
               
1-338
               

               
Cow position:
               
chr1:53424951-53425277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 68
               

               
Conread position:
               
1-338
               

               
Cow position:
               
chr1:89510168-89509821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 150
               

               
Conread position:
               
1-338
               

               
Cow position:
               
chr1:93528454-93528801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 221
               

               
Conread position:
               
1-339
               

               
Cow position:
               
chr1:21835712-21836032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
12, 98
               

               
Conread position:
               
1-341
               

               
Cow position:
               
chr1:31414194-31413866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 97
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr1:39418354-39417992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 74
               

               
Conread position:
               
1-361
               

               
Cow position:
               
chr1:72286285-72285952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 79
               

               
Conread position:
               
1-361
               

               
Cow position:
               
chr1:88652395-88652760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 215
               

               
Conread position:
               
1-362
               

               
Cow position:
               
chr1:21787090-21787453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 329
               

               
Conread position:
               
1-362
               

               
Cow position:
               
chr1:77880951-77880617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 32
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr1:8386-8733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 99
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr1:3137697-3138031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 30
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr1:3790292-3789952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
9, 85
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr1:10778338-10778681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 77
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr1:34159596-34159954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 193
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr1:45020039-45019682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 76
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr1:45555126-45555483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 15
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr1:52039401-52039754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 166
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr1:52994788-52995144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 142
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr1:53308628-53308276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 119
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr1:63435039-63434680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 13
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr1:69264586-69264926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 79
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr1:72012039-72011695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 71
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr1:76019914-76019579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 13
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr1:82880429-82880762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 96
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr1:84255518-84255885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 210
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr1:95056819-95057163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 188
               

               
Conread position:
               
1-364
               

               
Cow position:
               
chr1:15547233-15547590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 180
               

               
Conread position:
               
1-364
               

               
Cow position:
               
chr1:94226784-94226435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 98
               

               
Conread position:
               
1-364
               

               
Cow position:
               
chr1:99642606-99642250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 208
               

               
Conread position:
               
1-365
               

               
Cow position:
               
chr1:43505287-43505649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 72
               

               
Conread position:
               
1-365
               

               
Cow position:
               
chr1:73960465-73960820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 212
               

               
Conread position:
               
1-368
               

               
Cow position:
               
chr1:38278281-38277906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
6, 16
               

               
Conread position:
               
1-374
               

               
Cow position:
               
chr1:8349547-8349195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 94
               

               
Conread position:
               
2-173
               

               
Cow position:
               
chr1:67014149-67014326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
2-190
               

               
Cow position:
               
chr1:19545334-19545143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
2-192
               

               
Cow position:
               
chr1:61246386-61246201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
35, 12
               

               
Conread position:
               
2-257
               

               
Cow position:
               
chr1:51818706-51818962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
13, 84
               

               
Conread position:
               
2-259
               

               
Cow position:
               
chr1:50679521-50679257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
2-266
               

               
Cow position:
               
chr1:99095128-99095393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
7, 61
               

               
Conread position:
               
2-271
               

               
Cow position:
               
chr1:68446030-68445775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
13, 56
               

               
Conread position:
               
2-291
               

               
Cow position:
               
chr1:76470424-76470707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 74
               

               
Conread position:
               
2-296
               

               
Cow position:
               
chr1:10655243-10655540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 211
               

               
Conread position:
               
2-299
               

               
Cow position:
               
chr1:54199615-54199317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 12
               

               
Conread position:
               
2-309
               

               
Cow position:
               
chr1:39555141-39555448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
36, 219
               

               
Conread position:
               
2-318
               

               
Cow position:
               
chr1:57576002-57575683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
35, 207
               

               
Conread position:
               
2-318
               

               
Cow position:
               
chr1:94875913-94875593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 117
               

               
Conread position:
               
2-319
               

               
Cow position:
               
chr1:24133290-24132981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 74
               

               
Conread position:
               
2-319
               

               
Cow position:
               
chr1:92642676-92642367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
72, 34
               

               
Conread position:
               
2-319
               

               
Cow position:
               
chr1:98551478-98551802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 50
               

               
Conread position:
               
2-321
               

               
Cow position:
               
chr1:10632818-10633130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
5, 96
               

               
Conread position:
               
2-322
               

               
Cow position:
               
chr1:6941231-6941553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 123
               

               
Conread position:
               
2-322
               

               
Cow position:
               
chr1:6958644-6958966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 123
               

               
Conread position:
               
2-322
               

               
Cow position:
               
chr1:26729493-26729798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 96
               

               
Conread position:
               
2-322
               

               
Cow position:
               
chr1:92551370-92551061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
15, 167
               

               
Conread position:
               
2-323
               

               
Cow position:
               
chr1:39069186-39068870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 75
               

               
Conread position:
               
2-323
               

               
Cow position:
               
chr1:83747704-83748028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 155
               

               
Conread position:
               
2-329
               

               
Cow position:
               
chr1:52435035-52435364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 168
               

               
Conread position:
               
2-362
               

               
Cow position:
               
chr1:95499730-95499379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 124
               

               
Conread position:
               
2-363
               

               
Cow position:
               
chr1:3924029-3923682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 52
               

               
Conread position:
               
2-363
               

               
Cow position:
               
chr1:7739736-7740065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
36, 30
               

               
Conread position:
               
2-363
               

               
Cow position:
               
chr1:47233710-47233360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 82
               

               
Conread position:
               
2-370
               

               
Cow position:
               
chr1:57297257-57297614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 35
               

               
Conread position:
               
3-256
               

               
Cow position:
               
chr1:21572809-21573072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
22, 209
               

               
Conread position:
               
3-270
               

               
Cow position:
               
chr1:100512362-100512642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
3-299
               

               
Cow position:
               
chr1:24235752-24235457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 11
               

               
Conread position:
               
3-309
               

               
Cow position:
               
chr1:83048433-83048136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
25, 83
               

               
Conread position:
               
3-334
               

               
Cow position:
               
chr1:27145887-27145556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
34, 214
               

               
Conread position:
               
3-361
               

               
Cow position:
               
chr1:66430067-66430407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 20
               

               
Conread position:
               
4-318
               

               
Cow position:
               
chr1:80899875-80900201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
33, 211
               

               
Conread position:
               
4-363
               

               
Cow position:
               
chr1:18937067-18936720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 181
               

               
Conread position:
               
6-141
               

               
Cow position:
               
chr1:22790987-22791127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
31, 64
               

               
Conread position:
               
6-172
               

               
Cow position:
               
chr1:32631236-32631404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
31, 73
               

               
Conread position:
               
6-201
               

               
Cow position:
               
chr1:23969267-23969071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
31, 93
               

               
Conread position:
               
6-249
               

               
Cow position:
               
chr1:95050330-95050075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
6-276
               

               
Cow position:
               
chr1:43839297-43839568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
31, 132
               

               
Conread position:
               
6-299
               

               
Cow position:
               
chr1:57396159-57395874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 94
               

               
Conread position:
               
6-309
               

               
Cow position:
               
chr1:3429739-3429437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
27, 71
               

               
Conread position:
               
6-309
               

               
Cow position:
               
chr1:61735669-61735363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
31, 168
               

               
Conread position:
               
6-312
               

               
Cow position:
               
chr1:36880048-36880361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
32, 79
               

               
Conread position:
               
6-318
               

               
Cow position:
               
chr1:1185509-1185810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
31, 174
               

               
Conread position:
               
6-318
               

               
Cow position:
               
chr1:52753396-52753079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 175
               

               
Conread position:
               
6-318
               

               
Cow position:
               
chr1:73584632-73584329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 54
               

               
Conread position:
               
6-319
               

               
Cow position:
               
chr1:7186557-7186870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 184
               

               
Conread position:
               
6-319
               

               
Cow position:
               
chr1:95176705-95177020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 164
               

               
Conread position:
               
6-320
               

               
Cow position:
               
chr1:64804339-64804019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 182
               

               
Conread position:
               
6-323
               

               
Cow position:
               
chr1:92963168-92963481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 126
               

               
Conread position:
               
6-330
               

               
Cow position:
               
chr1:5023970-5023669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
5, 69
               

               
Conread position:
               
6-361
               

               
Cow position:
               
chr1:52052934-52052589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 92
               

               
Conread position:
               
6-363
               

               
Cow position:
               
chr1:4027631-4027981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 163
               

               
Conread position:
               
6-363
               

               
Cow position:
               
chr1:56229024-56229357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
32, 92
               

               
Conread position:
               
6-363
               

               
Cow position:
               
chr1:69695239-69694875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 223
               

               
Conread position:
               
6-367
               

               
Cow position:
               
chr1:72069057-72068712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 53
               

               
Conread position:
               
7-141
               

               
Cow position:
               
chr1:53650660-53650800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
7-256
               

               
Cow position:
               
chr1:44836459-44836204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
30, 91
               

               
Conread position:
               
7-307
               

               
Cow position:
               
chr1:43358244-43357941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
30, 269
               

               
Conread position:
               
7-319
               

               
Cow position:
               
chr1:72035158-72034842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 220
               

               
Conread position:
               
7-320
               

               
Cow position:
               
chr1:96964091-96964399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 187
               

               
Conread position:
               
7-323
               

               
Cow position:
               
chr1:10064208-10063895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
30, 172
               

               
Conread position:
               
7-363
               

               
Cow position:
               
chr1:15333652-15334009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 10
               

               
Conread position:
               
7-363
               

               
Cow position:
               
chr1:56225246-56225587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 84
               

               
Conread position:
               
8-151
               

               
Cow position:
               
chr1:26159660-26159512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
8-161
               

               
Cow position:
               
chr1:77891586-77891743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
8-162
               

               
Cow position:
               
chr1:99543277-99543122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
8-184
               

               
Cow position:
               
chr1:6881452-6881275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
8-201
               

               
Cow position:
               
chr1:95327381-95327184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
29, 155
               

               
Conread position:
               
8-202
               

               
Cow position:
               
chr1:102469191-102468998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
31, 10
               

               
Conread position:
               
8-224
               

               
Cow position:
               
chr1:49839279-49839494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 122
               

               
Conread position:
               
8-225
               

               
Cow position:
               
chr1:57698682-57698457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
29, 147
               

               
Conread position:
               
8-225
               

               
Cow position:
               
chr1:69941193-69940979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
32, 88
               

               
Conread position:
               
8-255
               

               
Cow position:
               
chr1:68282568-68282810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
29, 186
               

               
Conread position:
               
8-256
               

               
Cow position:
               
chr1:64962883-64962648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
31, 41
               

               
Conread position:
               
8-256
               

               
Cow position:
               
chr1:78184475-78184716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
29, 36
               

               
Conread position:
               
8-260
               

               
Cow position:
               
chr1:63905702-63905451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 51
               

               
Conread position:
               
8-260
               

               
Cow position:
               
chr1:82861546-82861804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
31, 199
               

               
Conread position:
               
8-262
               

               
Cow position:
               
chr1:3340709-3340963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
29, 158
               

               
Conread position:
               
8-265
               

               
Cow position:
               
chr1:38544675-38544436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
29, 22
               

               
Conread position:
               
8-273
               

               
Cow position:
               
chr1:47008802-47009069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 93
               

               
Conread position:
               
8-275
               

               
Cow position:
               
chr1:4573292-4573558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
31, 205
               

               
Conread position:
               
8-279
               

               
Cow position:
               
chr1:55163694-55163961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 137
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr1:43448052-43447783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 72
               

               
Conread position:
               
8-290
               

               
Cow position:
               
chr1:11873585-11873306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 90
               

               
Conread position:
               
8-293
               

               
Cow position:
               
chr1:99136658-99136374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
29, 10
               

               
Conread position:
               
8-295
               

               
Cow position:
               
chr1:73761580-73761295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 79
               

               
Conread position:
               
8-296
               

               
Cow position:
               
chr1:97755296-97755579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
29, 16
               

               
Conread position:
               
8-297
               

               
Cow position:
               
chr1:61564564-61564853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
30, 241
               

               
Conread position:
               
8-299
               

               
Cow position:
               
chr1:54163038-54162742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
30, 57
               

               
Conread position:
               
8-305
               

               
Cow position:
               
chr1:1991653-1991350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 152
               

               
Conread position:
               
8-309
               

               
Cow position:
               
chr1:10942320-10942022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 90
               

               
Conread position:
               
8-309
               

               
Cow position:
               
chr1:10964066-10964364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 90
               

               
Conread position:
               
8-311
               

               
Cow position:
               
chr1:79278670-79278373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 29
               

               
Conread position:
               
8-312
               

               
Cow position:
               
chr1:86672457-86672142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
30, 177
               

               
Conread position:
               
8-312
               

               
Cow position:
               
chr1:102647497-102647198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 72
               

               
Conread position:
               
8-317
               

               
Cow position:
               
chr1:81569263-81568948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 192
               

               
Conread position:
               
8-317
               

               
Cow position:
               
chr1:91800833-91800520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 9
               

               
Conread position:
               
8-318
               

               
Cow position:
               
chr1:21508159-21508474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
31, 151
               

               
Conread position:
               
8-318
               

               
Cow position:
               
chr1:23488741-23488425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
30, 216
               

               
Conread position:
               
8-319
               

               
Cow position:
               
chr1:25383434-25383750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 241
               

               
Conread position:
               
8-319
               

               
Cow position:
               
chr1:68619164-68618849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 27
               

               
Conread position:
               
8-319
               

               
Cow position:
               
chr1:78809655-78809958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 90
               

               
Conread position:
               
8-319
               

               
Cow position:
               
chr1:89349749-89350047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 72
               

               
Conread position:
               
8-319
               

               
Cow position:
               
chr1:92433791-92434082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
29, 18
               

               
Conread position:
               
8-319
               

               
Cow position:
               
chr1:98360636-98360322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 8
               

               
Conread position:
               
8-320
               

               
Cow position:
               
chr1:16767313-16767005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 127
               

               
Conread position:
               
8-320
               

               
Cow position:
               
chr1:22628866-22628567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
31, 55
               

               
Conread position:
               
8-320
               

               
Cow position:
               
chr1:33997140-33996841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
29, 120
               

               
Conread position:
               
8-320
               

               
Cow position:
               
chr1:55135608-55135920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 15
               

               
Conread position:
               
8-320
               

               
Cow position:
               
chr1:89076864-89076550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 41
               

               
Conread position:
               
8-322
               

               
Cow position:
               
chr1:79165319-79164998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 284
               

               
Conread position:
               
8-323
               

               
Cow position:
               
chr1:101634473-101634798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
29, 185
               

               
Conread position:
               
8-325
               

               
Cow position:
               
chr1:20000977-20000660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 50
               

               
Conread position:
               
8-325
               

               
Cow position:
               
chr1:22826941-22827246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 77
               

               
Conread position:
               
8-325
               

               
Cow position:
               
chr1:50931197-50930891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 55
               

               
Conread position:
               
8-325
               

               
Cow position:
               
chr1:53397759-53398063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
29, 159
               

               
Conread position:
               
8-325
               

               
Cow position:
               
chr1:56634870-56635186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 91
               

               
Conread position:
               
8-328
               

               
Cow position:
               
chr1:85596716-85597029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 58
               

               
Conread position:
               
8-331
               

               
Cow position:
               
chr1:20204798-20205119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 277
               

               
Conread position:
               
8-334
               

               
Cow position:
               
chr1:54478096-54478426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
8-338
               

               
Cow position:
               
chr1:19482301-19481981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 73
               

               
Conread position:
               
8-356
               

               
Cow position:
               
chr1:22728819-22729179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
8-356
               

               
Cow position:
               
chr1:65103408-65103738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
32, 51
               

               
Conread position:
               
8-361
               

               
Cow position:
               
chr1:53495235-53495577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 188
               

               
Conread position:
               
8-362
               

               
Cow position:
               
chr1:64302462-64302126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
29, 67
               

               
Conread position:
               
8-363
               

               
Cow position:
               
chr1:4290930-4291282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 282
               

               
Conread position:
               
8-363
               

               
Cow position:
               
chr1:54258340-54258684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 9
               

               
Conread position:
               
8-363
               

               
Cow position:
               
chr1:71119283-71119638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 48
               

               
Conread position:
               
8-363
               

               
Cow position:
               
chr1:81613157-81613507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 183
               

               
Conread position:
               
8-363
               

               
Cow position:
               
chr1:100551742-100552093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 89
               

               
Conread position:
               
8-365
               

               
Cow position:
               
chr1:101822726-101822395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 86
               

               
Conread position:
               
8-402
               

               
Cow position:
               
chr1:44125869-44125478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
9, 69
               

               
Conread position:
               
9-251
               

               
Cow position:
               
chr1:4293835-4294071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
28, 95
               

               
Conread position:
               
9-252
               

               
Cow position:
               
chr1:53540163-53540406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
28, 151
               

               
Conread position:
               
9-274
               

               
Cow position:
               
chr1:6765797-6766061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
29, 210
               

               
Conread position:
               
9-319
               

               
Cow position:
               
chr1:43389275-43388970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 98
               

               
Conread position:
               
9-319
               

               
Cow position:
               
chr1:80336473-80336167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 8
               

               
Conread position:
               
9-319
               

               
Cow position:
               
chr1:89835006-89835333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
28, 66
               

               
Conread position:
               
9-320
               

               
Cow position:
               
chr1:26200993-26201315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
28, 122
               

               
Conread position:
               
9-336
               

               
Cow position:
               
chr1:54732685-54732386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
28, 71
               

               
Conread position:
               
9-338
               

               
Cow position:
               
chr1:6077667-6077991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
28, 194
               

               
Conread position:
               
9-363
               

               
Cow position:
               
chr1:31348137-31347813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 67
               

               
Conread position:
               
10-205
               

               
Cow position:
               
chr1:67008964-67008773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
27, 34
               

               
Conread position:
               
10-271
               

               
Cow position:
               
chr1:8532439-8532180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
89, 26
               

               
Conread position:
               
10-276
               

               
Cow position:
               
chr1:31235158-31234892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 176
               

               
Conread position:
               
10-295
               

               
Cow position:
               
chr1:57247211-57247493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
27, 110
               

               
Conread position:
               
10-308
               

               
Cow position:
               
chr1:63391000-63390696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
10-319
               

               
Cow position:
               
chr1:100450412-100450094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
23, 224
               

               
Conread position:
               
10-363
               

               
Cow position:
               
chr1:91066375-91066034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 68
               

               
Conread position:
               
11-249
               

               
Cow position:
               
chr1:44164853-44165098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
11-270
               

               
Cow position:
               
chr1:88970834-88971088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
26, 88
               

               
Conread position:
               
11-325
               

               
Cow position:
               
chr1:93499397-93499709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 154
               

               
Conread position:
               
11-356
               

               
Cow position:
               
chr1:90868661-90868324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 48
               

               
Conread position:
               
11-360
               

               
Cow position:
               
chr1:56711847-56711488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
26, 59
               

               
Conread position:
               
13-271
               

               
Cow position:
               
chr1:71952864-71953110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
24, 85
               

               
Conread position:
               
13-312
               

               
Cow position:
               
chr1:70422077-70422379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
25, 203
               

               
Conread position:
               
14-319
               

               
Cow position:
               
chr1:52496559-52496852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
23, 173
               

               
Conread position:
               
15-323
               

               
Cow position:
               
chr1:98461069-98461372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 111
               

               
Conread position:
               
15-366
               

               
Cow position:
               
chr1:7971209-7971533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 60
               

               
Conread position:
               
16-277
               

               
Cow position:
               
chr1:52956039-52956298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 73
               

               
Conread position:
               
16-319
               

               
Cow position:
               
chr1:40599828-40600127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 58
               

               
Conread position:
               
16-323
               

               
Cow position:
               
chr1:34771724-34771417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 60
               

               
Conread position:
               
16-325
               

               
Cow position:
               
chr1:41181624-41181933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
21, 56
               

               
Conread position:
               
17-243
               

               
Cow position:
               
chr1:45673492-45673722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
20, 35
               

               
Conread position:
               
18-202
               

               
Cow position:
               
chr1:342363-342173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
18-253
               

               
Cow position:
               
chr1:78154943-78154705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
20, 96
               

               
Conread position:
               
18-257
               

               
Cow position:
               
chr1:98558002-98557764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
19, 145
               

               
Conread position:
               
18-259
               

               
Cow position:
               
chr1:22255164-22255392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
201, 21
               

               
Conread position:
               
18-319
               

               
Cow position:
               
chr1:26702426-26702125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 256
               

               
Conread position:
               
18-319
               

               
Cow position:
               
chr1:68845704-68845408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 145
               

               
Conread position:
               
18-319
               

               
Cow position:
               
chr1:81228558-81228251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 82
               

               
Conread position:
               
18-320
               

               
Cow position:
               
chr1:16962232-16961927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 194
               

               
Conread position:
               
18-322
               

               
Cow position:
               
chr1:98310842-98311157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 203
               

               
Conread position:
               
18-323
               

               
Cow position:
               
chr1:20099145-20099452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
19, 149
               

               
Conread position:
               
18-356
               

               
Cow position:
               
chr1:49433483-49433141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 87
               

               
Conread position:
               
18-363
               

               
Cow position:
               
chr1:11728959-11729293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 195
               

               
Conread position:
               
19-142
               

               
Cow position:
               
chr1:56618896-56618769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
19-185
               

               
Cow position:
               
chr1:86484738-86484915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
19-218
               

               
Cow position:
               
chr1:53613410-53613212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
18, 51
               

               
Conread position:
               
19-309
               

               
Cow position:
               
chr1:26179032-26178739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
16, 152
               

               
Conread position:
               
19-319
               

               
Cow position:
               
chr1:8287831-8287548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
20, 116
               

               
Conread position:
               
19-329
               

               
Cow position:
               
chr1:36997975-36998277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 163
               

               
Conread position:
               
19-360
               

               
Cow position:
               
chr1:37309728-37309404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 80
               

               
Conread position:
               
20-185
               

               
Cow position:
               
chr1:15627791-15627959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
17, 50
               

               
Conread position:
               
21-237
               

               
Cow position:
               
chr1:84910849-84910631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
19, 130
               

               
Conread position:
               
21-269
               

               
Cow position:
               
chr1:68995956-68996212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
18, 197
               

               
Conread position:
               
21-334
               

               
Cow position:
               
chr1:74956239-74955924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 261
               

               
Conread position:
               
22-283
               

               
Cow position:
               
chr1:95017730-95017483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 66
               

               
Conread position:
               
22-323
               

               
Cow position:
               
chr1:89485370-89485666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 51
               

               
Conread position:
               
24-250
               

               
Cow position:
               
chr1:33701908-33702132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
14, 61
               

               
Conread position:
               
24-309
               

               
Cow position:
               
chr1:85593560-85593847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
14, 35
               

               
Conread position:
               
24-356
               

               
Cow position:
               
chr1:34685982-34686298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 111
               

               
Conread position:
               
25-363
               

               
Cow position:
               
chr1:43872543-43872202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 12
               

               
Conread position:
               
26-318
               

               
Cow position:
               
chr1:96305178-96304888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
11, 6
               

               
Conread position:
               
27-259
               

               
Cow position:
               
chr1:41954463-41954219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
27-309
               

               
Cow position:
               
chr1:677269-677552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
59, 201
               

               
Conread position:
               
27-318
               

               
Cow position:
               
chr1:71643873-71643579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
11, 159
               

               
Conread position:
               
27-334
               

               
Cow position:
               
chr1:68862826-68863128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 47
               

               
Conread position:
               
27-356
               

               
Cow position:
               
chr1:75382782-75383093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 114
               

               
Conread position:
               
30-313
               

               
Cow position:
               
chr1:100393371-100393087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
7, 149
               

               
Conread position:
               
30-318
               

               
Cow position:
               
chr1:197214-196924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
7, 136
               

               
Conread position:
               
30-318
               

               
Cow position:
               
chr1:21955580-21955292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
8, 172
               

               
Conread position:
               
31-250
               

               
Cow position:
               
chr1:32013751-32013967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
6, 54
               

               
Conread position:
               
31-319
               

               
Cow position:
               
chr1:75141801-75142079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 39
               

               
Conread position:
               
31-319
               

               
Cow position:
               
chr1:101867150-101867432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
6, 63
               

               
Conread position:
               
31-323
               

               
Cow position:
               
chr1:95178747-95179040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
45, 27
               

               
Conread position:
               
32-290
               

               
Cow position:
               
chr1:5858895-5858634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
6, 182
               

               
Conread position:
               
33-173
               

               
Cow position:
               
chr1:10030338-10030476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
91, 7
               

               
Conread position:
               
33-202
               

               
Cow position:
               
chr1:49753728-49753896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
145, 90
               

               
Conread position:
               
33-309
               

               
Cow position:
               
chr1:72103643-72103922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 175
               

               
Conread position:
               
33-325
               

               
Cow position:
               
chr1:24542784-24542482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
48, 66
               

               
Conread position:
               
35-325
               

               
Cow position:
               
chr1:90976283-90976000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 44
               

               
Conread position:
               
36-159
               

               
Cow position:
               
chr1:99570664-99570541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
90, 28
               

               
Conread position:
               
36-181
               

               
Cow position:
               
chr1:7449933-7450076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
95, 48
               

               
Conread position:
               
36-270
               

               
Cow position:
               
chr1:81470929-81471166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 184
               

               
Conread position:
               
36-295
               

               
Cow position:
               
chr1:43340822-43340559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
50, 175
               

               
Conread position:
               
36-307
               

               
Cow position:
               
chr1:95654915-95654643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 134
               

               
Conread position:
               
36-325
               

               
Cow position:
               
chr1:4414407-4414121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
145, 197
               

               
Conread position:
               
36-334
               

               
Cow position:
               
chr1:94261348-94261633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 54
               

               
Conread position:
               
36-338
               

               
Cow position:
               
chr1:62036601-62036902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
50, 119
               

               
Conread position:
               
36-367
               

               
Cow position:
               
chr1:28563768-28563447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 141
               

               
Conread position:
               
37-185
               

               
Cow position:
               
chr1:18697551-18697395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
37-311
               

               
Cow position:
               
chr1:51654212-51654498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
39-359
               

               
Cow position:
               
chr1:40192874-40192582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
40-182
               

               
Cow position:
               
chr1:59278613-59278760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
40-305
               

               
Cow position:
               
chr1:53410724-53410465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
86, 44
               

               
Conread position:
               
40-309
               

               
Cow position:
               
chr1:7685833-7685561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
48, 155
               

               
Conread position:
               
40-309
               

               
Cow position:
               
chr1:11194146-11193875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
46, 155
               

               
Conread position:
               
40-309
               

               
Cow position:
               
chr1:69919643-69919373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
44, 156
               

               
Conread position:
               
40-309
               

               
Cow position:
               
chr1:96487984-96488256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
46, 185
               

               
Conread position:
               
40-309
               

               
Cow position:
               
chr1:100707889-100707621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
91, 154
               

               
Conread position:
               
40-314
               

               
Cow position:
               
chr1:6788485-6788206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
40-314
               

               
Cow position:
               
chr1:70343844-70344117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
46, 17
               

               
Conread position:
               
40-325
               

               
Cow position:
               
chr1:65025061-65025363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
41-293
               

               
Cow position:
               
chr1:82443651-82443399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 176
               

               
Conread position:
               
41-313
               

               
Cow position:
               
chr1:9533980-9534236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
13, 56
               

               
Conread position:
               
41-363
               

               
Cow position:
               
chr1:32001515-32001203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
91, 59
               

               
Conread position:
               
42-307
               

               
Cow position:
               
chr1:77103044-77102771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
42-312
               

               
Cow position:
               
chr1:4338993-4339266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
44, 153
               

               
Conread position:
               
42-319
               

               
Cow position:
               
chr1:46030546-46030279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
82, 40
               

               
Conread position:
               
43-261
               

               
Cow position:
               
chr1:83594000-83593784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
43, 32
               

               
Conread position:
               
43-308
               

               
Cow position:
               
chr1:97778802-97779063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
43, 128
               

               
Conread position:
               
44-289
               

               
Cow position:
               
chr1:31806682-31806933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
42, 224
               

               
Conread position:
               
44-319
               

               
Cow position:
               
chr1:42174780-42174507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
105, 53
               

               
Conread position:
               
44-323
               

               
Cow position:
               
chr1:25734662-25734953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
36, 169
               

               
Conread position:
               
44-335
               

               
Cow position:
               
chr1:73546098-73545813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
42, 129
               

               
Conread position:
               
44-363
               

               
Cow position:
               
chr1:24413248-24413577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
41, 238
               

               
Conread position:
               
45-182
               

               
Cow position:
               
chr1:11988346-11988208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
45-312
               

               
Cow position:
               
chr1:42398387-42398116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 156
               

               
Conread position:
               
46-309
               

               
Cow position:
               
chr1:57880982-57880712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
40, 161
               

               
Conread position:
               
46-311
               

               
Cow position:
               
chr1:182619-182878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
17, 5
               

               
Conread position:
               
46-319
               

               
Cow position:
               
chr1:54156930-54156653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 151
               

               
Conread position:
               
46-334
               

               
Cow position:
               
chr1:43703225-43703506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 19
               

               
Conread position:
               
46-363
               

               
Cow position:
               
chr1:33207064-33206762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 138
               

               
Conread position:
               
47-302
               

               
Cow position:
               
chr1:9166961-9166713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
77, 35
               

               
Conread position:
               
47-323
               

               
Cow position:
               
chr1:49317682-49317410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 12
               

               
Conread position:
               
47-331
               

               
Cow position:
               
chr1:71227888-71228184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
39, 250
               

               
Conread position:
               
48-298
               

               
Cow position:
               
chr1:61742651-61742400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
37, 166
               

               
Conread position:
               
49-318
               

               
Cow position:
               
chr1:92369542-92369819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
49-359
               

               
Cow position:
               
chr1:63530394-63530672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
82, 30
               

               
Conread position:
               
50-338
               

               
Cow position:
               
chr1:59518736-59519015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 15
               

               
Conread position:
               
50-368
               

               
Cow position:
               
chr1:22192577-22192898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 299
               

               
Conread position:
               
51-268
               

               
Cow position:
               
chr1:3243754-3243967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
77, 42
               

               
Conread position:
               
51-281
               

               
Cow position:
               
chr1:99039537-99039311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
128, 114
               

               
Conread position:
               
51-323
               

               
Cow position:
               
chr1:75933088-75933352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
133, 196
               

               
Conread position:
               
51-325
               

               
Cow position:
               
chr1:68763866-68763600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
51-363
               

               
Cow position:
               
chr1:86578764-86579080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 246
               

               
Conread position:
               
53-298
               

               
Cow position:
               
chr1:24445811-24445567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
20, 63
               

               
Conread position:
               
53-363
               

               
Cow position:
               
chr1:24778161-24777876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
58-241
               

               
Cow position:
               
chr1:32596276-32596461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
66, 147
               

               
Conread position:
               
58-309
               

               
Cow position:
               
chr1:63601722-63601468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
28, 137
               

               
Conread position:
               
58-318
               

               
Cow position:
               
chr1:98453405-98453673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
12, 187
               

               
Conread position:
               
58-363
               

               
Cow position:
               
chr1:20667919-20667625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 147
               

               
Conread position:
               
59-280
               

               
Cow position:
               
chr1:80631522-80631742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
27, 110
               

               
Conread position:
               
59-318
               

               
Cow position:
               
chr1:65905184-65904917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
60-320
               

               
Cow position:
               
chr1:31608074-31607806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
16, 194
               

               
Conread position:
               
60-363
               

               
Cow position:
               
chr1:42545959-42545661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 37
               

               
Conread position:
               
61-363
               

               
Cow position:
               
chr1:91875085-91874799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
25, 51
               

               
Conread position:
               
61-363
               

               
Cow position:
               
chr1:101866669-101866380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
70, 13
               

               
Conread position:
               
62-369
               

               
Cow position:
               
chr1:484639-484343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
62, 35
               

               
Conread position:
               
64-320
               

               
Cow position:
               
chr1:51417605-51417854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
117, 38
               

               
Conread position:
               
64-323
               

               
Cow position:
               
chr1:60281195-60281459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
66-256
               

               
Cow position:
               
chr1:69532759-69532575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
91, 18
               

               
Conread position:
               
66-319
               

               
Cow position:
               
chr1:77133590-77133835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
58, 31
               

               
Conread position:
               
66-325
               

               
Cow position:
               
chr1:12978512-12978770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
114, 5
               

               
Conread position:
               
66-325
               

               
Cow position:
               
chr1:22525711-22525966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
10, 23
               

               
Conread position:
               
66-362
               

               
Cow position:
               
chr1:101632508-101632220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 151
               

               
Conread position:
               
66-363
               

               
Cow position:
               
chr1:101280885-101280620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
67-320
               

               
Cow position:
               
chr1:74927713-74927967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
59, 13
               

               
Conread position:
               
67-323
               

               
Cow position:
               
chr1:101834654-101834901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
23, 90
               

               
Conread position:
               
67-363
               

               
Cow position:
               
chr1:55429128-55428838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 75
               

               
Conread position:
               
70-270
               

               
Cow position:
               
chr1:91834062-91834256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
54, 114
               

               
Conread position:
               
71-286
               

               
Cow position:
               
chr1:70028418-70028629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
71-309
               

               
Cow position:
               
chr1:38753753-38753995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
71-318
               

               
Cow position:
               
chr1:19568688-19568931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
110, 47
               

               
Conread position:
               
71-325
               

               
Cow position:
               
chr1:96472286-96472518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
113, 25
               

               
Conread position:
               
71-334
               

               
Cow position:
               
chr1:39225085-39224829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
119, 18
               

               
Conread position:
               
74-343
               

               
Cow position:
               
chr1:101946868-101946607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
112, 24
               

               
Conread position:
               
75-299
               

               
Cow position:
               
chr1:25386887-25387112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
13, 134
               

               
Conread position:
               
76-268
               

               
Cow position:
               
chr1:51684644-51684838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
48, 21
               

               
Conread position:
               
76-318
               

               
Cow position:
               
chr1:14309197-14308951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
48, 129
               

               
Conread position:
               
76-319
               

               
Cow position:
               
chr1:97938810-97939039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
48, 21
               

               
Conread position:
               
76-320
               

               
Cow position:
               
chr1:7748058-7748296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
48, 128
               

               
Conread position:
               
76-320
               

               
Cow position:
               
chr1:7752224-7752462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
48, 128
               

               
Conread position:
               
78-309
               

               
Cow position:
               
chr1:33409785-33409553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
46, 131
               

               
Conread position:
               
78-318
               

               
Cow position:
               
chr1:70428561-70428815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
50, 236
               

               
Conread position:
               
79-295
               

               
Cow position:
               
chr1:93228369-93228583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
30, 127
               

               
Conread position:
               
79-315
               

               
Cow position:
               
chr1:9470554-9470320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
102, 128
               

               
Conread position:
               
79-318
               

               
Cow position:
               
chr1:83659430-83659197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
45, 86
               

               
Conread position:
               
79-319
               

               
Cow position:
               
chr1:70026500-70026263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
117, 128
               

               
Conread position:
               
79-363
               

               
Cow position:
               
chr1:14206312-14206035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
52, 97
               

               
Conread position:
               
79-374
               

               
Cow position:
               
chr1:93554687-93554965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 82
               

               
Conread position:
               
80-224
               

               
Cow position:
               
chr1:100745451-100745598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
80-256
               

               
Cow position:
               
chr1:85826191-85826366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
104, 17
               

               
Conread position:
               
80-260
               

               
Cow position:
               
chr1:86511975-86512154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
52, 136
               

               
Conread position:
               
80-319
               

               
Cow position:
               
chr1:87095386-87095132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
80-363
               

               
Cow position:
               
chr1:88913162-88913437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
17, 121
               

               
Conread position:
               
81-266
               

               
Cow position:
               
chr1:6961754-6961937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
51, 15
               

               
Conread position:
               
82-208
               

               
Cow position:
               
chr1:72422726-72422599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
83-309
               

               
Cow position:
               
chr1:6228737-6228512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
43, 129
               

               
Conread position:
               
84-240
               

               
Cow position:
               
chr1:98397107-98396957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
99, 11
               

               
Conread position:
               
84-274
               

               
Cow position:
               
chr1:68245459-68245269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
40, 18
               

               
Conread position:
               
84-309
               

               
Cow position:
               
chr1:57420879-57420659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
40, 126
               

               
Conread position:
               
84-312
               

               
Cow position:
               
chr1:2737051-2737275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
47, 25
               

               
Conread position:
               
84-314
               

               
Cow position:
               
chr1:62519206-62519440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
47, 65
               

               
Conread position:
               
84-318
               

               
Cow position:
               
chr1:35554753-35554996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
45, 117
               

               
Conread position:
               
84-319
               

               
Cow position:
               
chr1:86682714-86682478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
66, 121
               

               
Conread position:
               
84-323
               

               
Cow position:
               
chr1:5579908-5580142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
108, 42
               

               
Conread position:
               
84-325
               

               
Cow position:
               
chr1:86110882-86110656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
97, 118
               

               
Conread position:
               
84-334
               

               
Cow position:
               
chr1:41115866-41115622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
100, 124
               

               
Conread position:
               
84-356
               

               
Cow position:
               
chr1:38401643-38401910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
135, 197
               

               
Conread position:
               
84-363
               

               
Cow position:
               
chr1:65909375-65909628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
40, 126
               

               
Conread position:
               
85-334
               

               
Cow position:
               
chr1:31272591-31272345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 102
               

               
Conread position:
               
85-334
               

               
Cow position:
               
chr1:70312955-70312694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
133, 102
               

               
Conread position:
               
88-319
               

               
Cow position:
               
chr1:87197680-87197902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
119, 74
               

               
Conread position:
               
88-323
               

               
Cow position:
               
chr1:23512802-23512573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
88-325
               

               
Cow position:
               
chr1:85647929-85647692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
93, 125
               

               
Conread position:
               
88-363
               

               
Cow position:
               
chr1:91811640-91811909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
96, 72
               

               
Conread position:
               
89-324
               

               
Cow position:
               
chr1:7609468-7609709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
7, 146
               

               
Conread position:
               
90-309
               

               
Cow position:
               
chr1:29481772-29481559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
34, 115
               

               
Conread position:
               
90-369
               

               
Cow position:
               
chr1:17196771-17196503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
98, 8
               

               
Conread position:
               
91-325
               

               
Cow position:
               
chr1:8129111-8128880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
90, 52
               

               
Conread position:
               
92-304
               

               
Cow position:
               
chr1:83410300-83410512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
38, 109
               

               
Conread position:
               
92-323
               

               
Cow position:
               
chr1:2976138-2975908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
41, 117
               

               
Conread position:
               
92-381
               

               
Cow position:
               
chr1:78838656-78838943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
112, 10
               

               
Conread position:
               
93-312
               

               
Cow position:
               
chr1:11172234-11172446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
33, 11
               

               
Conread position:
               
95-319
               

               
Cow position:
               
chr1:47886629-47886398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
33, 118
               

               
Conread position:
               
97-309
               

               
Cow position:
               
chr1:648185-648397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
31, 100
               

               
Conread position:
               
97-320
               

               
Cow position:
               
chr1:4243481-4243250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
29, 125
               

               
Conread position:
               
98-216
               

               
Cow position:
               
chr1:73536599-73536720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
98-224
               

               
Cow position:
               
chr1:90595692-90595563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
98-272
               

               
Cow position:
               
chr1:48696902-48696736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
86, 62
               

               
Conread position:
               
98-318
               

               
Cow position:
               
chr1:29451781-29452002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
21, 64
               

               
Conread position:
               
98-319
               

               
Cow position:
               
chr1:92997036-92996809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
98-323
               

               
Cow position:
               
chr1:30047731-30047517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
98-325
               

               
Cow position:
               
chr1:64572376-64572603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
86, 113
               

               
Conread position:
               
98-363
               

               
Cow position:
               
chr1:24407024-24406779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
86, 31
               

               
Conread position:
               
101-323
               

               
Cow position:
               
chr1:100817423-100817629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
83, 6
               

               
Conread position:
               
101-370
               

               
Cow position:
               
chr1:43311910-43311646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
14, 6
               

               
Conread position:
               
102-363
               

               
Cow position:
               
chr1:85550211-85549960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 110
               

               
Conread position:
               
102-363
               

               
Cow position:
               
chr1:86073461-86073714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
24, 108
               

               
Conread position:
               
106-256
               

               
Cow position:
               
chr1:10952361-10952207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
107-309
               

               
Cow position:
               
chr1:89785781-89785981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
5, 100
               

               
Conread position:
               
108-309
               

               
Cow position:
               
chr1:95637702-95637904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
16, 57
               

               
Conread position:
               
108-319
               

               
Cow position:
               
chr1:100569024-100569238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
16, 93
               

               
Conread position:
               
108-363
               

               
Cow position:
               
chr1:72105286-72105524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
70, 28
               

               
Conread position:
               
110-299
               

               
Cow position:
               
chr1:8984810-8984620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
99, 79
               

               
Conread position:
               
111-363
               

               
Cow position:
               
chr1:84104178-84103943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
13, 111
               

               
Conread position:
               
112-305
               

               
Cow position:
               
chr1:47790787-47790594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
78, 28
               

               
Conread position:
               
113-313
               

               
Cow position:
               
chr1:20104146-20104342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
113-316
               

               
Cow position:
               
chr1:3607688-3607883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
71, 111
               

               
Conread position:
               
113-367
               

               
Cow position:
               
chr1:80422154-80422394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
11, 96
               

               
Conread position:
               
115-276
               

               
Cow position:
               
chr1:22394674-22394842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
115-363
               

               
Cow position:
               
chr1:3352814-3352582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
116-296
               

               
Cow position:
               
chr1:15169451-15169276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
63, 90
               

               
Conread position:
               
116-312
               

               
Cow position:
               
chr1:47288120-47288316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
10, 98
               

               
Conread position:
               
116-363
               

               
Cow position:
               
chr1:261598-261354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
65, 45
               

               
Conread position:
               
117-334
               

               
Cow position:
               
chr1:99221470-99221258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
29, 35
               

               
Conread position:
               
118-363
               

               
Cow position:
               
chr1:81580056-81580295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
10, 45
               

               
Conread position:
               
119-363
               

               
Cow position:
               
chr1:6826405-6826181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
123-271
               

               
Cow position:
               
chr1:71716398-71716544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
94, 64
               

               
Conread position:
               
123-321
               

               
Cow position:
               
chr1:10616768-10616972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
65, 178
               

               
Conread position:
               
123-323
               

               
Cow position:
               
chr1:30418150-30417962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
123-323
               

               
Cow position:
               
chr1:61543030-61542833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
61, 87
               

               
Conread position:
               
123-363
               

               
Cow position:
               
chr1:78697881-78697654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
67, 32
               

               
Conread position:
               
124-309
               

               
Cow position:
               
chr1:42482092-42482274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
60, 69
               

               
Conread position:
               
124-319
               

               
Cow position:
               
chr1:98511817-98512009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
59, 87
               

               
Conread position:
               
124-363
               

               
Cow position:
               
chr1:78794336-78794113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
60, 76
               

               
Conread position:
               
124-364
               

               
Cow position:
               
chr1:56225682-56225904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
60, 35
               

               
Conread position:
               
125-259
               

               
Cow position:
               
chr1:80942437-80942570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
59, 93
               

               
Conread position:
               
125-319
               

               
Cow position:
               
chr1:92989479-92989672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
59, 75
               

               
Conread position:
               
125-362
               

               
Cow position:
               
chr1:43855191-43855412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
57, 106
               

               
Conread position:
               
127-362
               

               
Cow position:
               
chr1:48769694-48769919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
23, 95
               

               
Conread position:
               
128-363
               

               
Cow position:
               
chr1:22823799-22824023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
74, 6
               

               
Conread position:
               
133-309
               

               
Cow position:
               
chr1:86062088-86061922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
51, 75
               

               
Conread position:
               
134-325
               

               
Cow position:
               
chr1:19227156-19226969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
135-318
               

               
Cow position:
               
chr1:55818961-55819132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
138-335
               

               
Cow position:
               
chr1:30189049-30189250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
52, 81
               

               
Conread position:
               
139-324
               

               
Cow position:
               
chr1:45670542-45670719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
148-319
               

               
Cow position:
               
chr1:100474144-100474316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
36, 69
               

               
Conread position:
               
151-320
               

               
Cow position:
               
chr1:8347039-8347206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
33, 60
               

               
Conread position:
               
152-363
               

               
Cow position:
               
chr1:45223496-45223699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
32, 64
               

               
Conread position:
               
155-334
               

               
Cow position:
               
chr1:33998675-33998853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
13, 129
               

               
Conread position:
               
157-363
               

               
Cow position:
               
chr1:43312105-43311913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
159-363
               

               
Cow position:
               
chr1:186355-186163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
9, 63
               

               
Conread position:
               
164-324
               

               
Cow position:
               
chr1:73936223-73936058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
167-323
               

               
Cow position:
               
chr1:6240347-6240197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
17, 44
               

               
Conread position:
               
167-323
               

               
Cow position:
               
chr1:78068133-78067983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
17, 44
               

               
Conread position:
               
171-363
               

               
Cow position:
               
chr1:98575981-98576165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
13, 59
               

               
Conread position:
               
173-325
               

               
Cow position:
               
chr1:46764813-46764964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
174-323
               

               
Cow position:
               
chr1:101507296-101507446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
10, 46
               

               
Conread position:
               
175-363
               

               
Cow position:
               
chr1:62235508-62235329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
9, 42
               

               
Conread position:
               
177-363
               

               
Cow position:
               
chr1:71916176-71916002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
180-319
               

               
Cow position:
               
chr1:31357568-31357427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
180-319
               

               
Cow position:
               
chr1:77739661-77739804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
181-325
               

               
Cow position:
               
chr1:95974341-95974488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
185-323
               

               
Cow position:
               
chr1:8670724-8670859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
196-363
               

               
Cow position:
               
chr1:95835836-95835680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
198-363
               

               
Cow position:
               
chr1:45478898-45478745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
198-363
               

               
Cow position:
               
chr1:54157254-54157414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
21, 124
               

               
Conread position:
               
210-362
               

               
Cow position:
               
chr1:74082008-74081864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
215-363
               

               
Cow position:
               
chr1:85712416-85712557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
9, 108
               

               
Conread position:
               
216-319
               

               
Cow position:
               
chr1:40935788-40935685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
104
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
216-363
               

               
Cow position:
               
chr1:3914939-3914801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
217-319
               

               
Cow position:
               
chr1:102648259-102648360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
103
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
217-325
               

               
Cow position:
               
chr1:12082828-12082936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
54, 5
               

               
Conread position:
               
217-363
               

               
Cow position:
               
chr1:49980690-49980827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
243-362
               

               
Cow position:
               
chr1:55194240-55194129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
76, 0
               
Show alignments to all cow chromosomes.