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Cow genome map

           
Conread name:
           
Pig4-TMW8001P16
        

               
Conread position:
               
1-132
               

               
Cow position:
               
chr21:18713105-18713237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-146
               

               
Cow position:
               
chr21:13256625-13256773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
1-164
               

               
Cow position:
               
chr21:24797516-24797673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
36, 13
               

               
Conread position:
               
1-177
               

               
Cow position:
               
chr21:31159076-31159262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
1-179
               

               
Cow position:
               
chr21:7716970-7716783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
1-181
               

               
Cow position:
               
chr21:13395377-13395555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
36, 62
               

               
Conread position:
               
1-184
               

               
Cow position:
               
chr21:42053444-42053260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
13, 97
               

               
Conread position:
               
1-185
               

               
Cow position:
               
chr21:8648051-8648243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
1-185
               

               
Cow position:
               
chr21:33419894-33419716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
8, 56
               

               
Conread position:
               
1-186
               

               
Cow position:
               
chr21:4268694-4268884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr21:31277642-31277849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
6, 36
               

               
Conread position:
               
1-208
               

               
Cow position:
               
chr21:13703865-13703654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
20, 71
               

               
Conread position:
               
1-208
               

               
Cow position:
               
chr21:48484620-48484416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
36, 13
               

               
Conread position:
               
1-225
               

               
Cow position:
               
chr21:46973306-46973086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
10, 79
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr21:42913925-42913685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 133
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr21:17302555-17302317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
13, 37
               

               
Conread position:
               
1-244
               

               
Cow position:
               
chr21:34835602-34835364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
6, 25
               

               
Conread position:
               
1-247
               

               
Cow position:
               
chr21:18494787-18495040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 215
               

               
Conread position:
               
1-254
               

               
Cow position:
               
chr21:31676319-31676574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 61
               

               
Conread position:
               
1-259
               

               
Cow position:
               
chr21:2785956-2785696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 13
               

               
Conread position:
               
1-259
               

               
Cow position:
               
chr21:18932313-18932567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
36, 12
               

               
Conread position:
               
1-259
               

               
Cow position:
               
chr21:36642728-36642984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
9, 103
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chr21:20106925-20106675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
11, 40
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr21:13898012-13898274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 13
               

               
Conread position:
               
1-269
               

               
Cow position:
               
chr21:39450347-39450071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
36, 223
               

               
Conread position:
               
1-271
               

               
Cow position:
               
chr21:47802439-47802167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 180
               

               
Conread position:
               
1-274
               

               
Cow position:
               
chr21:37282130-37282397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
11, 150
               

               
Conread position:
               
1-275
               

               
Cow position:
               
chr21:12961078-12960802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
36, 13
               

               
Conread position:
               
1-276
               

               
Cow position:
               
chr21:44108828-44109100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
13, 76
               

               
Conread position:
               
1-280
               

               
Cow position:
               
chr21:21223111-21223383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
36, 169
               

               
Conread position:
               
1-287
               

               
Cow position:
               
chr21:43240679-43240974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
16, 199
               

               
Conread position:
               
1-290
               

               
Cow position:
               
chr21:24765105-24765394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
36, 107
               

               
Conread position:
               
1-291
               

               
Cow position:
               
chr21:2679373-2679669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
1-295
               

               
Cow position:
               
chr21:37479777-37480070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
9, 181
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr21:24222717-24222420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 46
               

               
Conread position:
               
1-299
               

               
Cow position:
               
chr21:10727102-10727397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 90
               

               
Conread position:
               
1-304
               

               
Cow position:
               
chr21:5636900-5636595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 80
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr21:4267529-4267219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
25, 196
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr21:12153954-12154261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
12, 179
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr21:17475639-17475947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
11, 38
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr21:29015071-29014783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
8, 56
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr21:33727640-33727331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
13, 83
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr21:45151802-45151501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
6, 185
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr21:4080175-4080477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
6, 22
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr21:22856037-22856347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 15
               

               
Conread position:
               
1-309
               

               
Cow position:
               
chr21:150297-150606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
14, 192
               

               
Conread position:
               
1-309
               

               
Cow position:
               
chr21:5021289-5021606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
1-309
               

               
Cow position:
               
chr21:7666798-7667111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
14, 124
               

               
Conread position:
               
1-309
               

               
Cow position:
               
chr21:8618095-8618394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
6, 206
               

               
Conread position:
               
1-309
               

               
Cow position:
               
chr21:18781661-18781971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
14, 195
               

               
Conread position:
               
1-309
               

               
Cow position:
               
chr21:23899986-23899677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
16, 196
               

               
Conread position:
               
1-309
               

               
Cow position:
               
chr21:40786491-40786807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
8, 156
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chr21:5238216-5238526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
14, 85
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chr21:19196347-19196031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 217
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chr21:19614994-19615309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
14, 40
               

               
Conread position:
               
1-313
               

               
Cow position:
               
chr21:4399620-4399937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 85
               

               
Conread position:
               
1-313
               

               
Cow position:
               
chr21:10071108-10070793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
5, 60
               

               
Conread position:
               
1-314
               

               
Cow position:
               
chr21:28512353-28512649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 124
               

               
Conread position:
               
1-317
               

               
Cow position:
               
chr21:7564501-7564169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 30
               

               
Conread position:
               
1-317
               

               
Cow position:
               
chr21:28734091-28733775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 130
               

               
Conread position:
               
1-318
               

               
Cow position:
               
chr21:395697-396006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 78
               

               
Conread position:
               
1-318
               

               
Cow position:
               
chr21:11114532-11114846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
6, 83
               

               
Conread position:
               
1-318
               

               
Cow position:
               
chr21:16696191-16696512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
14, 30
               

               
Conread position:
               
1-318
               

               
Cow position:
               
chr21:28027624-28027935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 192
               

               
Conread position:
               
1-318
               

               
Cow position:
               
chr21:29979935-29979632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
6, 91
               

               
Conread position:
               
1-318
               

               
Cow position:
               
chr21:33210019-33210327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 198
               

               
Conread position:
               
1-319
               

               
Cow position:
               
chr21:81891-82207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
6, 207
               

               
Conread position:
               
1-319
               

               
Cow position:
               
chr21:11645148-11644826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 99
               

               
Conread position:
               
1-319
               

               
Cow position:
               
chr21:15911221-15911540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 80
               

               
Conread position:
               
1-319
               

               
Cow position:
               
chr21:16187978-16187667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 29
               

               
Conread position:
               
1-319
               

               
Cow position:
               
chr21:30990447-30990147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 71
               

               
Conread position:
               
1-319
               

               
Cow position:
               
chr21:37299286-37299602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
15, 131
               

               
Conread position:
               
1-319
               

               
Cow position:
               
chr21:41155682-41156010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-319
               

               
Cow position:
               
chr21:41597636-41597951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 212
               

               
Conread position:
               
1-319
               

               
Cow position:
               
chr21:42841770-42841457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 12
               

               
Conread position:
               
1-319
               

               
Cow position:
               
chr21:43357438-43357116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 12
               

               
Conread position:
               
1-319
               

               
Cow position:
               
chr21:46263997-46264310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
13, 48
               

               
Conread position:
               
1-320
               

               
Cow position:
               
chr21:10263864-10264174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 13
               

               
Conread position:
               
1-320
               

               
Cow position:
               
chr21:14452051-14452375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 61
               

               
Conread position:
               
1-320
               

               
Cow position:
               
chr21:22718960-22718643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 102
               

               
Conread position:
               
1-320
               

               
Cow position:
               
chr21:45971337-45971033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 85
               

               
Conread position:
               
1-321
               

               
Cow position:
               
chr21:46143764-46144101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 104
               

               
Conread position:
               
1-323
               

               
Cow position:
               
chr21:1058898-1059219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 238
               

               
Conread position:
               
1-323
               

               
Cow position:
               
chr21:9416063-9416395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
1-323
               

               
Cow position:
               
chr21:32237118-32237423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 99
               

               
Conread position:
               
1-323
               

               
Cow position:
               
chr21:34391149-34390831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 82
               

               
Conread position:
               
1-323
               

               
Cow position:
               
chr21:34653905-34654217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 23
               

               
Conread position:
               
1-323
               

               
Cow position:
               
chr21:38449631-38449305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 288
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chr21:3585536-3585222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 23
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chr21:10151616-10151951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 104
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chr21:19083779-19083441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
37, 217
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chr21:19258647-19258964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 167
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chr21:28955343-28955647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
9, 70
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chr21:33263669-33263990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 62
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chr21:38918036-38918344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
36, 146
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chr21:41579572-41579902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 15
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chr21:41974558-41974232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 216
               

               
Conread position:
               
1-334
               

               
Cow position:
               
chr21:45915883-45915563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
10, 72
               

               
Conread position:
               
1-337
               

               
Cow position:
               
chr21:23586697-23587038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 327
               

               
Conread position:
               
1-338
               

               
Cow position:
               
chr21:25764456-25764793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
36, 164
               

               
Conread position:
               
1-338
               

               
Cow position:
               
chr21:44826058-44825728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 13
               

               
Conread position:
               
1-339
               

               
Cow position:
               
chr21:42384326-42384667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 217
               

               
Conread position:
               
1-355
               

               
Cow position:
               
chr21:3361193-3360841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 111
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr21:802473-802136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
13, 72
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr21:22860823-22861180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 88
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr21:29484805-29485159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 84
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr21:30231882-30231518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 202
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr21:34010569-34010217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 71
               

               
Conread position:
               
1-357
               

               
Cow position:
               
chr21:23821989-23822332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
14, 205
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr21:2927382-2927029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
36, 13
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr21:14760401-14760741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 81
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr21:27569337-27568997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
36, 13
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr21:27863698-27863338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 327
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr21:31662281-31662643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 232
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr21:36795423-36795779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 90
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr21:47764291-47763942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 98
               

               
Conread position:
               
1-364
               

               
Cow position:
               
chr21:10118374-10118743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 207
               

               
Conread position:
               
1-365
               

               
Cow position:
               
chr21:38900594-38900951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 193
               

               
Conread position:
               
1-370
               

               
Cow position:
               
chr21:40589662-40589299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 135
               

               
Conread position:
               
2-152
               

               
Cow position:
               
chr21:35897304-35897456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
2-191
               

               
Cow position:
               
chr21:13163715-13163904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
35, 12
               

               
Conread position:
               
2-220
               

               
Cow position:
               
chr21:15867134-15867352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
13, 43
               

               
Conread position:
               
2-236
               

               
Cow position:
               
chr21:40058628-40058864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
20, 12
               

               
Conread position:
               
2-259
               

               
Cow position:
               
chr21:26829423-26829183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
35, 56
               

               
Conread position:
               
2-259
               

               
Cow position:
               
chr21:27743564-27743829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 48
               

               
Conread position:
               
2-309
               

               
Cow position:
               
chr21:13488341-13488657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 102
               

               
Conread position:
               
2-316
               

               
Cow position:
               
chr21:10601546-10601238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
37, 72
               

               
Conread position:
               
2-318
               

               
Cow position:
               
chr21:12801922-12801608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 12
               

               
Conread position:
               
2-318
               

               
Cow position:
               
chr21:28477443-28477768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
13, 114
               

               
Conread position:
               
2-319
               

               
Cow position:
               
chr21:25344700-25345001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
37, 77
               

               
Conread position:
               
2-320
               

               
Cow position:
               
chr21:6623965-6624298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
35, 204
               

               
Conread position:
               
2-359
               

               
Cow position:
               
chr21:7582087-7581721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 212
               

               
Conread position:
               
2-363
               

               
Cow position:
               
chr21:15976464-15976808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 37
               

               
Conread position:
               
3-169
               

               
Cow position:
               
chr21:49353025-49353193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
34, 80
               

               
Conread position:
               
3-223
               

               
Cow position:
               
chr21:16789544-16789771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
12, 172
               

               
Conread position:
               
3-227
               

               
Cow position:
               
chr21:9998897-9998669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
35, 57
               

               
Conread position:
               
3-241
               

               
Cow position:
               
chr21:10882257-10882505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
12, 61
               

               
Conread position:
               
3-317
               

               
Cow position:
               
chr21:45850887-45850569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
34, 132
               

               
Conread position:
               
3-318
               

               
Cow position:
               
chr21:41620942-41621264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 215
               

               
Conread position:
               
3-320
               

               
Cow position:
               
chr21:3763915-3763602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 98
               

               
Conread position:
               
3-338
               

               
Cow position:
               
chr21:10514631-10514966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 94
               

               
Conread position:
               
3-363
               

               
Cow position:
               
chr21:13128268-13127923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 11
               

               
Conread position:
               
3-365
               

               
Cow position:
               
chr21:20160507-20160854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 122
               

               
Conread position:
               
4-259
               

               
Cow position:
               
chr21:5137666-5137407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 191
               

               
Conread position:
               
4-361
               

               
Cow position:
               
chr21:30592479-30592129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 173
               

               
Conread position:
               
5-276
               

               
Cow position:
               
chr21:9872793-9873056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
34, 54
               

               
Conread position:
               
5-286
               

               
Cow position:
               
chr21:10608630-10608345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
17, 200
               

               
Conread position:
               
6-142
               

               
Cow position:
               
chr21:28907817-28907683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
31, 43
               

               
Conread position:
               
6-157
               

               
Cow position:
               
chr21:34254455-34254300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
6-179
               

               
Cow position:
               
chr21:12616966-12617138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
31, 79
               

               
Conread position:
               
6-182
               

               
Cow position:
               
chr21:13303646-13303823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
31, 75
               

               
Conread position:
               
6-257
               

               
Cow position:
               
chr21:21077157-21077404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
31, 41
               

               
Conread position:
               
6-278
               

               
Cow position:
               
chr21:45866763-45867033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
123, 31
               

               
Conread position:
               
6-297
               

               
Cow position:
               
chr21:20262507-20262217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
31, 151
               

               
Conread position:
               
6-299
               

               
Cow position:
               
chr21:36163136-36162839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 193
               

               
Conread position:
               
6-303
               

               
Cow position:
               
chr21:10967060-10967356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
32, 191
               

               
Conread position:
               
6-309
               

               
Cow position:
               
chr21:13048370-13048063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 137
               

               
Conread position:
               
6-309
               

               
Cow position:
               
chr21:22194284-22193967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 70
               

               
Conread position:
               
6-311
               

               
Cow position:
               
chr21:33997395-33997095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 70
               

               
Conread position:
               
6-318
               

               
Cow position:
               
chr21:25127435-25127743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
31, 16
               

               
Conread position:
               
6-319
               

               
Cow position:
               
chr21:44251999-44251703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
31, 89
               

               
Conread position:
               
6-355
               

               
Cow position:
               
chr21:725065-724711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 218
               

               
Conread position:
               
7-207
               

               
Cow position:
               
chr21:18934751-18934948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
31, 15
               

               
Conread position:
               
7-295
               

               
Cow position:
               
chr21:24607213-24607502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
30, 175
               

               
Conread position:
               
8-164
               

               
Cow position:
               
chr21:42465658-42465819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
8-179
               

               
Cow position:
               
chr21:42348849-42348673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
8-188
               

               
Cow position:
               
chr21:40065484-40065304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
29, 51
               

               
Conread position:
               
8-202
               

               
Cow position:
               
chr21:21216312-21216118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
33, 122
               

               
Conread position:
               
8-213
               

               
Cow position:
               
chr21:37361639-37361441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
29, 75
               

               
Conread position:
               
8-217
               

               
Cow position:
               
chr21:41957345-41957134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
29, 64
               

               
Conread position:
               
8-249
               

               
Cow position:
               
chr21:912138-911896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 204
               

               
Conread position:
               
8-263
               

               
Cow position:
               
chr21:1464057-1464314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
30, 205
               

               
Conread position:
               
8-275
               

               
Cow position:
               
chr21:16612458-16612721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
29, 68
               

               
Conread position:
               
8-276
               

               
Cow position:
               
chr21:3813654-3813386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 162
               

               
Conread position:
               
8-276
               

               
Cow position:
               
chr21:6102438-6102164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 111
               

               
Conread position:
               
8-276
               

               
Cow position:
               
chr21:28881971-28882236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
29, 64
               

               
Conread position:
               
8-283
               

               
Cow position:
               
chr21:3381252-3380974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 10
               

               
Conread position:
               
8-284
               

               
Cow position:
               
chr21:8351475-8351207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
29, 22
               

               
Conread position:
               
8-285
               

               
Cow position:
               
chr21:36756443-36756706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 58
               

               
Conread position:
               
8-291
               

               
Cow position:
               
chr21:17174971-17175255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 189
               

               
Conread position:
               
8-294
               

               
Cow position:
               
chr21:46829439-46829157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
29, 75
               

               
Conread position:
               
8-307
               

               
Cow position:
               
chr21:17471708-17472006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
31, 145
               

               
Conread position:
               
8-307
               

               
Cow position:
               
chr21:18929526-18929824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
30, 242
               

               
Conread position:
               
8-307
               

               
Cow position:
               
chr21:21982635-21982933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
30, 242
               

               
Conread position:
               
8-307
               

               
Cow position:
               
chr21:27146163-27145864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 183
               

               
Conread position:
               
8-308
               

               
Cow position:
               
chr21:17709655-17709950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
38, 144
               

               
Conread position:
               
8-309
               

               
Cow position:
               
chr21:49700207-49699910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 182
               

               
Conread position:
               
8-311
               

               
Cow position:
               
chr21:22353401-22353105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
76, 25
               

               
Conread position:
               
8-312
               

               
Cow position:
               
chr21:17428332-17428629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
76, 25
               

               
Conread position:
               
8-312
               

               
Cow position:
               
chr21:18942000-18941701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
76, 29
               

               
Conread position:
               
8-312
               

               
Cow position:
               
chr21:29214320-29214027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 77
               

               
Conread position:
               
8-317
               

               
Cow position:
               
chr21:28429278-28429582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 116
               

               
Conread position:
               
8-318
               

               
Cow position:
               
chr21:6833881-6834188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 67
               

               
Conread position:
               
8-319
               

               
Cow position:
               
chr21:5566818-5567126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 111
               

               
Conread position:
               
8-319
               

               
Cow position:
               
chr21:18850390-18850084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
29, 67
               

               
Conread position:
               
8-319
               

               
Cow position:
               
chr21:31691307-31691622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
30, 283
               

               
Conread position:
               
8-319
               

               
Cow position:
               
chr21:37345272-37344961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 8
               

               
Conread position:
               
8-320
               

               
Cow position:
               
chr21:26648177-26647874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 161
               

               
Conread position:
               
8-320
               

               
Cow position:
               
chr21:40133984-40134298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 198
               

               
Conread position:
               
8-321
               

               
Cow position:
               
chr21:24598490-24598800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
29, 162
               

               
Conread position:
               
8-323
               

               
Cow position:
               
chr21:28989444-28989757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 15
               

               
Conread position:
               
8-323
               

               
Cow position:
               
chr21:30849110-30848797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 63
               

               
Conread position:
               
8-323
               

               
Cow position:
               
chr21:31253365-31253677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 208
               

               
Conread position:
               
8-323
               

               
Cow position:
               
chr21:33791539-33791237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 73
               

               
Conread position:
               
8-323
               

               
Cow position:
               
chr21:45330779-45330463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 205
               

               
Conread position:
               
8-325
               

               
Cow position:
               
chr21:13365173-13365488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 86
               

               
Conread position:
               
8-325
               

               
Cow position:
               
chr21:30607259-30606940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 96
               

               
Conread position:
               
8-338
               

               
Cow position:
               
chr21:45473928-45473600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 177
               

               
Conread position:
               
8-349
               

               
Cow position:
               
chr21:18845186-18844841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
68, 28
               

               
Conread position:
               
8-350
               

               
Cow position:
               
chr21:35897797-35897457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
29, 86
               

               
Conread position:
               
8-356
               

               
Cow position:
               
chr21:4282039-4281699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 75
               

               
Conread position:
               
8-356
               

               
Cow position:
               
chr21:44515103-44515441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 68
               

               
Conread position:
               
8-363
               

               
Cow position:
               
chr21:5153446-5153796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 194
               

               
Conread position:
               
8-363
               

               
Cow position:
               
chr21:17183751-17184093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 63
               

               
Conread position:
               
8-364
               

               
Cow position:
               
chr21:33562844-33563180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 32
               

               
Conread position:
               
8-367
               

               
Cow position:
               
chr21:37706578-37706235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 64
               

               
Conread position:
               
9-308
               

               
Cow position:
               
chr21:9310875-9311181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
29, 90
               

               
Conread position:
               
9-318
               

               
Cow position:
               
chr21:47495827-47495514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
30, 201
               

               
Conread position:
               
9-334
               

               
Cow position:
               
chr21:42135794-42135461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 222
               

               
Conread position:
               
9-361
               

               
Cow position:
               
chr21:38692019-38692382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
28, 76
               

               
Conread position:
               
10-174
               

               
Cow position:
               
chr21:13763453-13763617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
28, 106
               

               
Conread position:
               
10-276
               

               
Cow position:
               
chr21:11639851-11640119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
28, 20
               

               
Conread position:
               
10-363
               

               
Cow position:
               
chr21:21169664-21169314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 93
               

               
Conread position:
               
10-363
               

               
Cow position:
               
chr21:32339906-32339564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 62
               

               
Conread position:
               
11-262
               

               
Cow position:
               
chr21:17714145-17714401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
27, 110
               

               
Conread position:
               
11-288
               

               
Cow position:
               
chr21:17479214-17479486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
26, 63
               

               
Conread position:
               
13-295
               

               
Cow position:
               
chr21:6765714-6765977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
24, 78
               

               
Conread position:
               
13-318
               

               
Cow position:
               
chr21:9028454-9028755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
26, 159
               

               
Conread position:
               
16-320
               

               
Cow position:
               
chr21:10114492-10114193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 90
               

               
Conread position:
               
17-256
               

               
Cow position:
               
chr21:36793730-36793972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
17-317
               

               
Cow position:
               
chr21:15584573-15584281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 23
               

               
Conread position:
               
18-259
               

               
Cow position:
               
chr21:28617429-28617671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
19, 27
               

               
Conread position:
               
18-317
               

               
Cow position:
               
chr21:6910044-6909740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
20, 7
               

               
Conread position:
               
18-320
               

               
Cow position:
               
chr21:4998648-4998354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 194
               

               
Conread position:
               
18-355
               

               
Cow position:
               
chr21:25382848-25383200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 31
               

               
Conread position:
               
18-359
               

               
Cow position:
               
chr21:39401433-39401766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 203
               

               
Conread position:
               
18-363
               

               
Cow position:
               
chr21:27624551-27624874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
19-276
               

               
Cow position:
               
chr21:5344495-5344763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
67, 95
               

               
Conread position:
               
19-319
               

               
Cow position:
               
chr21:28244315-28244610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 57
               

               
Conread position:
               
20-158
               

               
Cow position:
               
chr21:43631362-43631219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
21-320
               

               
Cow position:
               
chr21:17722866-17723154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
18, 77
               

               
Conread position:
               
22-319
               

               
Cow position:
               
chr21:18800686-18800394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
19, 154
               

               
Conread position:
               
23-160
               

               
Cow position:
               
chr21:14125889-14126030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
14, 78
               

               
Conread position:
               
23-218
               

               
Cow position:
               
chr21:31511137-31511328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
14, 23
               

               
Conread position:
               
23-269
               

               
Cow position:
               
chr21:5455144-5454901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
14, 69
               

               
Conread position:
               
24-276
               

               
Cow position:
               
chr21:21769969-21770224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
14, 182
               

               
Conread position:
               
24-363
               

               
Cow position:
               
chr21:10633796-10633465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 222
               

               
Conread position:
               
25-325
               

               
Cow position:
               
chr21:24642364-24642668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 48
               

               
Conread position:
               
27-302
               

               
Cow position:
               
chr21:11456962-11456686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
10, 32
               

               
Conread position:
               
30-310
               

               
Cow position:
               
chr21:10823404-10823690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
10, 190
               

               
Conread position:
               
32-309
               

               
Cow position:
               
chr21:44962647-44962927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
5, 32
               

               
Conread position:
               
33-304
               

               
Cow position:
               
chr21:8451748-8452010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
20, 82
               

               
Conread position:
               
34-319
               

               
Cow position:
               
chr21:937894-938159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
34-325
               

               
Cow position:
               
chr21:11359892-11360182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 76
               

               
Conread position:
               
35-323
               

               
Cow position:
               
chr21:19673671-19673950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
97, 60
               

               
Conread position:
               
36-308
               

               
Cow position:
               
chr21:47009382-47009109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
91, 61
               

               
Conread position:
               
36-363
               

               
Cow position:
               
chr21:10005028-10004710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 64
               

               
Conread position:
               
36-363
               

               
Cow position:
               
chr21:42007602-42007286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 39
               

               
Conread position:
               
37-312
               

               
Cow position:
               
chr21:9301067-9301356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
49, 171
               

               
Conread position:
               
37-320
               

               
Cow position:
               
chr21:23980328-23980041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
39, 170
               

               
Conread position:
               
37-356
               

               
Cow position:
               
chr21:29978903-29978579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 6
               

               
Conread position:
               
38-269
               

               
Cow position:
               
chr21:4585506-4585271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
50, 134
               

               
Conread position:
               
38-323
               

               
Cow position:
               
chr21:11250725-11251013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
48, 183
               

               
Conread position:
               
39-237
               

               
Cow position:
               
chr21:21143758-21143959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
47, 82
               

               
Conread position:
               
40-279
               

               
Cow position:
               
chr21:2293854-2294081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
84, 35
               

               
Conread position:
               
40-280
               

               
Cow position:
               
chr21:8438946-8438723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
143, 100
               

               
Conread position:
               
40-308
               

               
Cow position:
               
chr21:3987624-3987352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
52, 156
               

               
Conread position:
               
40-309
               

               
Cow position:
               
chr21:18718530-18718802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
46, 178
               

               
Conread position:
               
40-309
               

               
Cow position:
               
chr21:24136779-24137051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
46, 185
               

               
Conread position:
               
40-319
               

               
Cow position:
               
chr21:12462109-12461826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
41-256
               

               
Cow position:
               
chr21:39809762-39809971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
143, 57
               

               
Conread position:
               
41-309
               

               
Cow position:
               
chr21:14502581-14502845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
45, 154
               

               
Conread position:
               
41-309
               

               
Cow position:
               
chr21:28914503-28914231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
41, 155
               

               
Conread position:
               
41-319
               

               
Cow position:
               
chr21:20152810-20153096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 176
               

               
Conread position:
               
42-267
               

               
Cow position:
               
chr21:34736894-34737118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
43, 57
               

               
Conread position:
               
42-309
               

               
Cow position:
               
chr21:17875332-17875063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
44, 181
               

               
Conread position:
               
42-309
               

               
Cow position:
               
chr21:18805894-18805629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
84, 139
               

               
Conread position:
               
42-323
               

               
Cow position:
               
chr21:12723020-12723295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
44, 113
               

               
Conread position:
               
43-324
               

               
Cow position:
               
chr21:20418825-20418537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
46-185
               

               
Cow position:
               
chr21:32138805-32138945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
84, 117
               

               
Conread position:
               
48-320
               

               
Cow position:
               
chr21:34151450-34151726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 233
               

               
Conread position:
               
50-241
               

               
Cow position:
               
chr21:16481574-16481381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
36, 9
               

               
Conread position:
               
51-276
               

               
Cow position:
               
chr21:10261154-10261378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
76, 135
               

               
Conread position:
               
51-309
               

               
Cow position:
               
chr21:27668884-27669143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
73, 142
               

               
Conread position:
               
51-313
               

               
Cow position:
               
chr21:46911-47174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 47
               

               
Conread position:
               
53-185
               

               
Cow position:
               
chr21:949794-949668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
55-317
               

               
Cow position:
               
chr21:30222218-30222483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
29, 46
               

               
Conread position:
               
57-269
               

               
Cow position:
               
chr21:17414667-17414459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
123, 89
               

               
Conread position:
               
59-276
               

               
Cow position:
               
chr21:13519071-13519287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
27, 120
               

               
Conread position:
               
59-304
               

               
Cow position:
               
chr21:11131460-11131707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
27, 120
               

               
Conread position:
               
60-317
               

               
Cow position:
               
chr21:22121405-22121643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
61-249
               

               
Cow position:
               
chr21:4568168-4568355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
127, 83
               

               
Conread position:
               
61-363
               

               
Cow position:
               
chr21:46552217-46551926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
63, 23
               

               
Conread position:
               
64-319
               

               
Cow position:
               
chr21:36789679-36789935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 70
               

               
Conread position:
               
64-356
               

               
Cow position:
               
chr21:32574604-32574906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
81, 128
               

               
Conread position:
               
65-255
               

               
Cow position:
               
chr21:36279891-36280081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
61, 154
               

               
Conread position:
               
67-272
               

               
Cow position:
               
chr21:34722901-34722695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
23, 118
               

               
Conread position:
               
67-308
               

               
Cow position:
               
chr21:37349883-37350123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
59, 124
               

               
Conread position:
               
68-217
               

               
Cow position:
               
chr21:46469859-46470010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
69-274
               

               
Cow position:
               
chr21:9980073-9979875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
115, 61
               

               
Conread position:
               
70-334
               

               
Cow position:
               
chr21:10673023-10673275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
71-316
               

               
Cow position:
               
chr21:12916533-12916284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
55, 134
               

               
Conread position:
               
72-281
               

               
Cow position:
               
chr21:30236923-30236722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
75-266
               

               
Cow position:
               
chr21:29224965-29224773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
49, 148
               

               
Conread position:
               
75-323
               

               
Cow position:
               
chr21:10561687-10561439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 130
               

               
Conread position:
               
75-329
               

               
Cow position:
               
chr21:2260461-2260216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
75-377
               

               
Cow position:
               
chr21:22465094-22465390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
100, 130
               

               
Conread position:
               
76-309
               

               
Cow position:
               
chr21:9698189-9697950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
13, 128
               

               
Conread position:
               
76-323
               

               
Cow position:
               
chr21:9940297-9940044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
15, 146
               

               
Conread position:
               
78-309
               

               
Cow position:
               
chr21:37790102-37789869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
44, 130
               

               
Conread position:
               
80-309
               

               
Cow position:
               
chr21:11198247-11198018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
46, 132
               

               
Conread position:
               
80-312
               

               
Cow position:
               
chr21:16914677-16914911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
46, 108
               

               
Conread position:
               
80-318
               

               
Cow position:
               
chr21:24343363-24343128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
50, 99
               

               
Conread position:
               
80-319
               

               
Cow position:
               
chr21:45262910-45262670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
74, 109
               

               
Conread position:
               
81-305
               

               
Cow position:
               
chr21:38664541-38664765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
100, 50
               

               
Conread position:
               
81-319
               

               
Cow position:
               
chr21:42022193-42022415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
84-320
               

               
Cow position:
               
chr21:21686324-21686558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
42, 82
               

               
Conread position:
               
86-313
               

               
Cow position:
               
chr21:4280764-4280540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
95, 74
               

               
Conread position:
               
88-323
               

               
Cow position:
               
chr21:6997848-6998091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
44, 125
               

               
Conread position:
               
88-325
               

               
Cow position:
               
chr21:30835272-30835509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 173
               

               
Conread position:
               
89-318
               

               
Cow position:
               
chr21:33580324-33580558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
49, 130
               

               
Conread position:
               
90-318
               

               
Cow position:
               
chr21:17364564-17364341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
40, 103
               

               
Conread position:
               
92-315
               

               
Cow position:
               
chr21:3400920-3400696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
34, 74
               

               
Conread position:
               
92-318
               

               
Cow position:
               
chr21:9036209-9036440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
98-297
               

               
Cow position:
               
chr21:37014483-37014288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
32, 92
               

               
Conread position:
               
98-323
               

               
Cow position:
               
chr21:40432368-40432589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
8, 114
               

               
Conread position:
               
99-353
               

               
Cow position:
               
chr21:7394300-7394555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
12, 109
               

               
Conread position:
               
101-321
               

               
Cow position:
               
chr21:44214047-44214268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
117, 181
               

               
Conread position:
               
102-305
               

               
Cow position:
               
chr21:33360110-33359917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
22, 105
               

               
Conread position:
               
102-319
               

               
Cow position:
               
chr21:36909858-36910071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
23, 114
               

               
Conread position:
               
102-322
               

               
Cow position:
               
chr21:16569825-16570044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
75, 106
               

               
Conread position:
               
105-323
               

               
Cow position:
               
chr21:33414158-33413944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
101, 145
               

               
Conread position:
               
106-319
               

               
Cow position:
               
chr21:40266049-40266261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
18, 113
               

               
Conread position:
               
106-323
               

               
Cow position:
               
chr21:1511219-1511433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
78, 112
               

               
Conread position:
               
106-325
               

               
Cow position:
               
chr21:15544290-15544083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
77, 103
               

               
Conread position:
               
110-274
               

               
Cow position:
               
chr21:19210646-19210809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
22, 91
               

               
Conread position:
               
111-329
               

               
Cow position:
               
chr21:2810229-2810012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
77, 64
               

               
Conread position:
               
113-319
               

               
Cow position:
               
chr21:41140783-41140578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
16, 86
               

               
Conread position:
               
116-356
               

               
Cow position:
               
chr21:5464685-5464923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
68, 137
               

               
Conread position:
               
116-359
               

               
Cow position:
               
chr21:11779592-11779364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
15, 72
               

               
Conread position:
               
118-317
               

               
Cow position:
               
chr21:47363798-47363596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
118-363
               

               
Cow position:
               
chr21:977204-976965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
66, 22
               

               
Conread position:
               
121-363
               

               
Cow position:
               
chr21:868982-868748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 0
               

               
Conread position:
               
123-241
               

               
Cow position:
               
chr21:14228625-14228505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
123-256
               

               
Cow position:
               
chr21:7391331-7391200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
60, 93
               

               
Conread position:
               
123-285
               

               
Cow position:
               
chr21:5612054-5612214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
91, 65
               

               
Conread position:
               
123-319
               

               
Cow position:
               
chr21:30256319-30256134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
123-320
               

               
Cow position:
               
chr21:6758292-6758484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
61, 89
               

               
Conread position:
               
123-320
               

               
Cow position:
               
chr21:17890248-17890443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
61, 82
               

               
Conread position:
               
123-363
               

               
Cow position:
               
chr21:47714058-47713834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
61, 36
               

               
Conread position:
               
124-303
               

               
Cow position:
               
chr21:9302481-9302303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
60, 99
               

               
Conread position:
               
125-319
               

               
Cow position:
               
chr21:22014132-22014330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
126-313
               

               
Cow position:
               
chr21:28919576-28919389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
58, 91
               

               
Conread position:
               
126-320
               

               
Cow position:
               
chr21:36910688-36910882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
58, 74
               

               
Conread position:
               
129-319
               

               
Cow position:
               
chr21:19060136-19059953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
52, 71
               

               
Conread position:
               
131-325
               

               
Cow position:
               
chr21:19513818-19514009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
53, 79
               

               
Conread position:
               
141-309
               

               
Cow position:
               
chr21:17982939-17983109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
72, 157
               

               
Conread position:
               
149-363
               

               
Cow position:
               
chr21:31159373-31159573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
15, 64
               

               
Conread position:
               
169-309
               

               
Cow position:
               
chr21:13588755-13588890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
37, 19
               

               
Conread position:
               
171-363
               

               
Cow position:
               
chr21:7768427-7768614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
13, 151
               

               
Conread position:
               
179-319
               

               
Cow position:
               
chr21:1764862-1764730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
179-363
               

               
Cow position:
               
chr21:36508243-36508410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
204-363
               

               
Cow position:
               
chr21:17062950-17063097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
205-363
               

               
Cow position:
               
chr21:24797685-24797830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
210-363
               

               
Cow position:
               
chr21:41610199-41610346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
8, 0
               
Show alignments to all cow chromosomes.