Cow genome map
| Conread name: | Pig4-TMW8003J24 |
| Conread position: | 1-206 |
| Cow position: | chr1:35844199-35843996 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 13, 111 |
| Conread position: | 1-248 |
| Cow position: | chr1:7800343-7800588 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 14, 41 |
| Conread position: | 1-248 |
| Cow position: | chr1:71302874-71303104 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 1-257 |
| Cow position: | chr1:9870125-9869864 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 193 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 14, 167 |
| Conread position: | 11-177 |
| Cow position: | chr1:52036699-52036537 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 11-255 |
| Cow position: | chr1:20521939-20521709 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 11-262 |
| Cow position: | chr1:49131379-49131129 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 183 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 201, 240 |
| Conread position: | 12-206 |
| Cow position: | chr1:92642693-92642509 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 12-248 |
| Cow position: | chr1:30413329-30413568 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 182 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 47, 129 |
| Conread position: | 12-248 |
| Cow position: | chr1:97422553-97422324 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 28, 99 |
| Conread position: | 12-261 |
| Cow position: | chr1:76850978-76850738 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 180, 32 |
| Conread position: | 12-371 |
| Cow position: | chr1:61661561-61661190 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 267 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 169, 43 |
| Conread position: | 14-245 |
| Cow position: | chr1:90423340-90423112 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 198, 149 |
| Conread position: | 14-248 |
| Cow position: | chr1:56643843-56643615 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 178 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 198, 96 |
| Conread position: | 16-248 |
| Cow position: | chr1:7143101-7142873 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 196, 109 |
| Conread position: | 18-204 |
| Cow position: | chr1:81161767-81161941 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 18-242 |
| Cow position: | chr1:95467589-95467364 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 152, 37 |
| Conread position: | 18-244 |
| Cow position: | chr1:80973864-80973635 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 171, 92 |
| Conread position: | 18-245 |
| Cow position: | chr1:31871170-31871397 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 172 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 194, 145 |
| Conread position: | 18-245 |
| Cow position: | chr1:85783276-85783496 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 173 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 18-247 |
| Cow position: | chr1:50634656-50634427 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 173 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 194, 144 |
| Conread position: | 18-250 |
| Cow position: | chr1:78791557-78791329 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 29, 93 |
| Conread position: | 19-358 |
| Cow position: | chr1:98612993-98613314 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 244 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 227, 21 |
| Conread position: | 20-249 |
| Cow position: | chr1:16973090-16972866 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 37, 100 |
| Conread position: | 20-408 |
| Cow position: | chr1:25183877-25184285 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 288 |
| Conread position: | 24-256 |
| Cow position: | chr1:51836327-51836555 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 188, 84 |
| Conread position: | 29-236 |
| Cow position: | chr1:70236532-70236325 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 18, 59 |
| Conread position: | 33-254 |
| Cow position: | chr1:29916179-29916390 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 116, 55 |
| Conread position: | 39-256 |
| Cow position: | chr1:9444079-9443865 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 204, 124 |
| Conread position: | 40-242 |
| Cow position: | chr1:78750921-78750718 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 38, 80 |
| Conread position: | 40-248 |
| Cow position: | chr1:101812503-101812301 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 152, 34 |
| Conread position: | 56-257 |
| Cow position: | chr1:64939155-64938958 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 156, 63 |
| Conread position: | 75-248 |
| Cow position: | chr1:89443670-89443507 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 79-265 |
| Cow position: | chr1:89548000-89548184 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 90, 44 |
| Conread position: | 90-245 |
| Cow position: | chr1:5278595-5278441 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 121, 73 |
| Conread position: | 97-245 |
| Cow position: | chr1:38525415-38525560 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 115, 84 |
| Conread position: | 110-262 |
| Cow position: | chr1:57782847-57782991 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 128-410 |
| Cow position: | chr1:97603749-97603463 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 208 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 41, 24 |
| Conread position: | 241-440 |
| Cow position: | chr1:54125218-54125020 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 18, 43 |
| Conread position: | 242-398 |
| Cow position: | chr1:50045812-50045963 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 121, 27 |
| Conread position: | 248-387 |
| Cow position: | chr1:35843910-35843774 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 257-398 |
| Cow position: | chr1:28678548-28678685 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 257-410 |
| Cow position: | chr1:69415684-69415534 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 138, 23 |
| Conread position: | 257-420 |
| Cow position: | chr1:74947092-74946932 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 154, 26 |
| Conread position: | 260-387 |
| Cow position: | chr1:71136181-71136304 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 260-387 |
| Cow position: | chr1:90423053-90422930 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 260-410 |
| Cow position: | chr1:12227072-12226924 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 140, 28 |
| Conread position: | 260-410 |
| Cow position: | chr1:44746891-44747036 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 140, 20 |
| Conread position: | 260-410 |
| Cow position: | chr1:80384735-80384587 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 140, 23 |
| Conread position: | 260-437 |
| Cow position: | chr1:75998439-75998267 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 152, 26 |
| Conread position: | 263-385 |
| Cow position: | chr1:5278383-5278264 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 96 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 263-386 |
| Cow position: | chr1:4788565-4788685 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 263-398 |
| Cow position: | chr1:61737127-61737258 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 263-408 |
| Cow position: | chr1:5102461-5102320 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 263-410 |
| Cow position: | chr1:36614058-36613916 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 266-410 |
| Cow position: | chr1:54217051-54217192 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 131, 21 |
| Conread position: | 289-414 |
| Cow position: | chr1:81162068-81162191 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 99, 0 |
Show alignments to all cow chromosomes.