Cow genome map
| Conread name: | Pig4-TMW8003J24 |
| Conread position: | 1-246 |
| Cow position: | chr11:32800039-32800284 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 26, 112 |
| Conread position: | 1-253 |
| Cow position: | chr11:46770749-46770501 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 15, 112 |
| Conread position: | 1-257 |
| Cow position: | chr11:46247151-46247410 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 19, 113 |
| Conread position: | 1-262 |
| Cow position: | chr11:65970160-65970424 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 165 |
| Conread position: | 1-410 |
| Cow position: | chr11:75255142-75255553 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 293 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 11, 112 |
| Conread position: | 11-249 |
| Cow position: | chr11:53452628-53452396 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 201, 99 |
| Conread position: | 11-352 |
| Cow position: | chr11:78990256-78989924 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 240 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 201, 99 |
| Conread position: | 11-353 |
| Cow position: | chr11:13690571-13690239 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 197, 18 |
| Conread position: | 12-248 |
| Cow position: | chr11:19238438-19238206 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 181 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 30, 97 |
| Conread position: | 12-257 |
| Cow position: | chr11:65987949-65988188 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 180, 28 |
| Conread position: | 12-262 |
| Cow position: | chr11:67940425-67940662 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 231, 33 |
| Conread position: | 18-244 |
| Cow position: | chr11:8828904-8828683 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 204, 92 |
| Conread position: | 18-244 |
| Cow position: | chr11:25332004-25331793 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 167 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 194, 22 |
| Conread position: | 18-245 |
| Cow position: | chr11:40396052-40396270 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 194, 22 |
| Conread position: | 18-245 |
| Cow position: | chr11:46398852-46399073 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 194, 22 |
| Conread position: | 18-248 |
| Cow position: | chr11:12950217-12949995 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 190, 22 |
| Conread position: | 18-248 |
| Cow position: | chr11:48650519-48650745 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 173 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 194, 28 |
| Conread position: | 18-249 |
| Cow position: | chr11:3177779-3177999 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 32, 81 |
| Conread position: | 18-249 |
| Cow position: | chr11:56892544-56892770 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 176 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 18-249 |
| Cow position: | chr11:57047238-57047018 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 64, 22 |
| Conread position: | 18-257 |
| Cow position: | chr11:43644374-43644145 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 41, 77 |
| Conread position: | 18-257 |
| Cow position: | chr11:64845370-64845610 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 178 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 174, 138 |
| Conread position: | 18-260 |
| Cow position: | chr11:17964229-17963991 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 194, 128 |
| Conread position: | 18-263 |
| Cow position: | chr11:67745052-67745290 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 174 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 229, 92 |
| Conread position: | 19-221 |
| Cow position: | chr11:35282848-35283047 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 19-236 |
| Cow position: | chr11:20491299-20491510 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 169 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 193, 21 |
| Conread position: | 19-245 |
| Cow position: | chr11:62738941-62739167 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 175 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 134, 145 |
| Conread position: | 19-248 |
| Cow position: | chr11:46001956-46001722 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 40, 31 |
| Conread position: | 19-433 |
| Cow position: | chr11:51389812-51389378 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 303 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 82, 51 |
| Conread position: | 20-206 |
| Cow position: | chr11:38010085-38009903 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 20-245 |
| Cow position: | chr11:7333995-7333774 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 188, 90 |
| Conread position: | 20-245 |
| Cow position: | chr11:16000655-16000875 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 176 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 192, 13 |
| Conread position: | 20-248 |
| Cow position: | chr11:42519471-42519690 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 192, 19 |
| Conread position: | 20-267 |
| Cow position: | chr11:76395505-76395745 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 79, 135 |
| Conread position: | 22-249 |
| Cow position: | chr11:50951279-50951507 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 141 |
| Conread position: | 22-358 |
| Cow position: | chr11:73474045-73473698 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 31 |
| Conread position: | 22-406 |
| Cow position: | chr11:66265335-66265723 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 280 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 190, 18 |
| Conread position: | 28-247 |
| Cow position: | chr11:9253288-9253068 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 18, 56 |
| Conread position: | 28-256 |
| Cow position: | chr11:11460232-11460453 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 184, 82 |
| Conread position: | 29-198 |
| Cow position: | chr11:30952783-30952614 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 18, 135 |
| Conread position: | 34-245 |
| Cow position: | chr11:45889694-45889912 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 157 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 160, 0 |
| Conread position: | 40-410 |
| Cow position: | chr11:19269323-19268938 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 272 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 172, 75 |
| Conread position: | 43-205 |
| Cow position: | chr11:46413326-46413483 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 56-206 |
| Cow position: | chr11:28691994-28691851 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 76-245 |
| Cow position: | chr11:876882-877047 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 135, 34 |
| Conread position: | 80-263 |
| Cow position: | chr11:25188489-25188668 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 64, 111 |
| Conread position: | 117-387 |
| Cow position: | chr11:2394243-2393959 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 203 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 19, 97 |
| Conread position: | 257-387 |
| Cow position: | chr11:20491571-20491696 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 257-436 |
| Cow position: | chr11:52832719-52832544 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 154, 22 |
| Conread position: | 257-440 |
| Cow position: | chr11:40275599-40275420 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 132, 26 |
| Conread position: | 257-440 |
| Cow position: | chr11:40279091-40278912 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 132, 26 |
| Conread position: | 258-406 |
| Cow position: | chr11:373141-372995 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 120 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 144, 33 |
| Conread position: | 260-409 |
| Cow position: | chr11:17151676-17151823 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 140, 23 |
| Conread position: | 260-417 |
| Cow position: | chr11:696343-696188 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 140, 19 |
| Conread position: | 261-398 |
| Cow position: | chr11:47565931-47565798 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 263-387 |
| Cow position: | chr11:8828624-8828503 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 263-387 |
| Cow position: | chr11:65988232-65988353 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 263-387 |
| Cow position: | chr11:67236406-67236529 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 263-407 |
| Cow position: | chr11:60137699-60137839 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 263-410 |
| Cow position: | chr11:45889967-45890112 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 139, 24 |
| Conread position: | 263-434 |
| Cow position: | chr11:42519742-42519912 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 126, 20 |
| Conread position: | 263-437 |
| Cow position: | chr11:9874324-9874494 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 126, 20 |
| Conread position: | 264-388 |
| Cow position: | chr11:34642224-34642103 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 265-410 |
| Cow position: | chr11:37372315-37372464 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 266-435 |
| Cow position: | chr11:34946060-34945893 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 123, 25 |
| Conread position: | 269-440 |
| Cow position: | chr11:54058005-54058173 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 128, 14 |
| Conread position: | 285-398 |
| Cow position: | chr11:76007406-76007518 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 93 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 103, 0 |
Show alignments to all cow chromosomes.