Cow genome map
| Conread name: | Pig4-TMW8003J24 |
| Conread position: | 1-206 |
| Cow position: | chr3:66738474-66738680 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 19, 41 |
| Conread position: | 1-229 |
| Cow position: | chr3:42563153-42563382 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 43, 164 |
| Conread position: | 1-244 |
| Cow position: | chr3:5420165-5419922 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 185 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 19, 51 |
| Conread position: | 2-198 |
| Cow position: | chr3:75143330-75143137 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 159 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 18, 110 |
| Conread position: | 2-410 |
| Cow position: | chr3:22954147-22953739 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 57 |
| Conread position: | 3-187 |
| Cow position: | chr3:51227860-51228045 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 43, 140 |
| Conread position: | 11-206 |
| Cow position: | chr3:44861595-44861401 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 154 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 11-248 |
| Cow position: | chr3:66116399-66116166 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 177 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 201, 99 |
| Conread position: | 11-358 |
| Cow position: | chr3:76188407-76188752 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 244 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 35, 14 |
| Conread position: | 12-195 |
| Cow position: | chr3:52836188-52836007 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 12-206 |
| Cow position: | chr3:68342540-68342351 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 12-214 |
| Cow position: | chr3:42461414-42461612 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 200, 98 |
| Conread position: | 12-256 |
| Cow position: | chr3:65581302-65581062 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 155, 56 |
| Conread position: | 12-262 |
| Cow position: | chr3:58865745-58865499 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 125, 98 |
| Conread position: | 13-249 |
| Cow position: | chr3:50462057-50462284 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 85, 109 |
| Conread position: | 18-204 |
| Cow position: | chr3:59608228-59608409 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 18-240 |
| Cow position: | chr3:22170909-22171124 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 41, 87 |
| Conread position: | 18-245 |
| Cow position: | chr3:62883922-62884147 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 177 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 43, 82 |
| Conread position: | 18-259 |
| Cow position: | chr3:11949633-11949401 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 198, 99 |
| Conread position: | 18-270 |
| Cow position: | chr3:37451789-37452035 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 151, 69 |
| Conread position: | 18-357 |
| Cow position: | chr3:70130092-70129737 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 69, 62 |
| Conread position: | 18-363 |
| Cow position: | chr3:32597208-32596845 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 266 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 194, 92 |
| Conread position: | 18-387 |
| Cow position: | chr3:22271716-22271334 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 275 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 135, 76 |
| Conread position: | 19-247 |
| Cow position: | chr3:82473773-82474002 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 40, 117 |
| Conread position: | 19-255 |
| Cow position: | chr3:42603551-42603782 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 80, 127 |
| Conread position: | 19-352 |
| Cow position: | chr3:48433666-48433993 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 193, 144 |
| Conread position: | 20-266 |
| Cow position: | chr3:53588668-53588420 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 79 |
| Conread position: | 22-206 |
| Cow position: | chr3:51255508-51255690 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 154 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 52, 105 |
| Conread position: | 22-248 |
| Cow position: | chr3:23944821-23945043 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 179 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 61, 71 |
| Conread position: | 23-248 |
| Cow position: | chr3:31907424-31907197 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 36, 144 |
| Conread position: | 23-249 |
| Cow position: | chr3:36174349-36174123 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 189, 140 |
| Conread position: | 28-245 |
| Cow position: | chr3:1299963-1300172 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 41, 83 |
| Conread position: | 28-248 |
| Cow position: | chr3:74611292-74611509 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 98 |
| Conread position: | 30-229 |
| Cow position: | chr3:70913347-70913151 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 182, 80 |
| Conread position: | 42-410 |
| Cow position: | chr3:9074579-9074199 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 279 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 17, 69 |
| Conread position: | 58-262 |
| Cow position: | chr3:55992111-55991906 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 161 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 154, 94 |
| Conread position: | 60-247 |
| Cow position: | chr3:71135550-71135737 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 93, 86 |
| Conread position: | 73-232 |
| Cow position: | chr3:47524734-47524577 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 139, 37 |
| Conread position: | 73-234 |
| Cow position: | chr3:61913375-61913530 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 139, 22 |
| Conread position: | 92-344 |
| Cow position: | chr3:18757983-18757725 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 120, 71 |
| Conread position: | 110-206 |
| Cow position: | chr3:15976976-15977071 (view UCSC Genome Browser custom track) |
| Alignm length: | 97 |
| Alignm identity: | 82 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 111-246 |
| Cow position: | chr3:8790782-8790648 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 101, 51 |
| Conread position: | 130-353 |
| Cow position: | chr3:61116543-61116316 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 170 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 62, 33 |
| Conread position: | 132-358 |
| Cow position: | chr3:48374923-48375147 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 81, 31 |
| Conread position: | 251-410 |
| Cow position: | chr3:23111523-23111368 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 256-398 |
| Cow position: | chr3:15221523-15221385 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 257-387 |
| Cow position: | chr3:53588388-53588262 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 257-392 |
| Cow position: | chr3:73436445-73436314 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 260-392 |
| Cow position: | chr3:8746233-8746105 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 260-432 |
| Cow position: | chr3:25076168-25075999 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 140, 23 |
| Conread position: | 261-436 |
| Cow position: | chr3:74912853-74913023 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 102, 19 |
| Conread position: | 263-387 |
| Cow position: | chr3:5419862-5419741 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 263-387 |
| Cow position: | chr3:24538874-24538995 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 263-387 |
| Cow position: | chr3:39911057-39910937 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 263-409 |
| Cow position: | chr3:84112579-84112433 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 100, 25 |
| Conread position: | 263-410 |
| Cow position: | chr3:8924043-8924187 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 136, 17 |
| Conread position: | 263-425 |
| Cow position: | chr3:55991867-55991704 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 42, 20 |
| Conread position: | 263-433 |
| Cow position: | chr3:74611565-74611735 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 136, 28 |
| Conread position: | 264-387 |
| Cow position: | chr3:10431603-10431722 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 264-387 |
| Cow position: | chr3:58632565-58632684 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 99, 13 |
| Conread position: | 266-410 |
| Cow position: | chr3:62628260-62628120 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 288-410 |
| Cow position: | chr3:25027425-25027547 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.