Cow genome map
| Conread name: | Pig4-TMW8003J24 |
| Conread position: | 1-206 |
| Cow position: | chr5:31604879-31604683 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 1-249 |
| Cow position: | chr5:22934706-22934457 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 190 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 19, 41 |
| Conread position: | 11-241 |
| Cow position: | chr5:43329931-43329706 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 88, 126 |
| Conread position: | 11-245 |
| Cow position: | chr5:29560171-29560398 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 212, 29 |
| Conread position: | 12-206 |
| Cow position: | chr5:12709648-12709839 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 6, 29 |
| Conread position: | 12-206 |
| Cow position: | chr5:32153553-32153365 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 12-249 |
| Cow position: | chr5:58748519-58748763 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 15-248 |
| Cow position: | chr5:41636639-41636864 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 15-248 |
| Cow position: | chr5:69773337-69773561 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 197, 108 |
| Conread position: | 18-242 |
| Cow position: | chr5:33467272-33467054 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 176 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 194, 92 |
| Conread position: | 18-244 |
| Cow position: | chr5:1344089-1343864 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 11 |
| Conread position: | 18-246 |
| Cow position: | chr5:26046103-26046327 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 190, 27 |
| Conread position: | 18-246 |
| Cow position: | chr5:30332712-30332936 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 168 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 41, 66 |
| Conread position: | 18-249 |
| Cow position: | chr5:14153911-14154145 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 179 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 21, 146 |
| Conread position: | 18-356 |
| Cow position: | chr5:20974675-20974341 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 169, 92 |
| Conread position: | 19-248 |
| Cow position: | chr5:9430689-9430469 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 19-248 |
| Cow position: | chr5:22839703-22839478 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 27, 71 |
| Conread position: | 20-257 |
| Cow position: | chr5:27615285-27615518 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 39, 98 |
| Conread position: | 21-243 |
| Cow position: | chr5:70582126-70581907 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 41, 79 |
| Conread position: | 21-248 |
| Cow position: | chr5:37714133-37713903 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 145 |
| Conread position: | 26-198 |
| Cow position: | chr5:23366990-23366821 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 27-198 |
| Cow position: | chr5:50425700-50425532 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 36-393 |
| Cow position: | chr5:32269559-32269926 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 252 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 130, 68 |
| Conread position: | 40-249 |
| Cow position: | chr5:72344351-72344141 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 28, 109 |
| Conread position: | 58-205 |
| Cow position: | chr5:24361342-24361481 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 86-248 |
| Cow position: | chr5:73526214-73526373 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 126, 9 |
| Conread position: | 90-249 |
| Cow position: | chr5:38629128-38629282 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 110-379 |
| Cow position: | chr5:41906947-41907194 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 98, 29 |
| Conread position: | 113-245 |
| Cow position: | chr5:39182051-39181920 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 109, 50 |
| Conread position: | 128-263 |
| Cow position: | chr5:36407033-36407167 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 84, 35 |
| Conread position: | 246-410 |
| Cow position: | chr5:18695196-18695352 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 249-410 |
| Cow position: | chr5:58343896-58344055 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 140, 39 |
| Conread position: | 256-410 |
| Cow position: | chr5:58748815-58748964 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 144, 9 |
| Conread position: | 257-410 |
| Cow position: | chr5:39442343-39442493 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 143, 31 |
| Conread position: | 257-420 |
| Cow position: | chr5:75687279-75687118 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 132, 26 |
| Conread position: | 260-398 |
| Cow position: | chr5:47680968-47680834 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 105 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 263-392 |
| Cow position: | chr5:17097763-17097888 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 263-398 |
| Cow position: | chr5:67149966-67149835 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 263-409 |
| Cow position: | chr5:3649410-3649268 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 111 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 100, 20 |
| Conread position: | 263-409 |
| Cow position: | chr5:38629338-38629482 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 134, 34 |
| Conread position: | 263-410 |
| Cow position: | chr5:21195071-21194926 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 137, 25 |
| Conread position: | 263-411 |
| Cow position: | chr5:50425435-50425290 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 137, 20 |
| Conread position: | 263-412 |
| Cow position: | chr5:30333002-30333149 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 134, 20 |
| Conread position: | 263-423 |
| Cow position: | chr5:27615565-27615725 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 137, 16 |
| Conread position: | 263-436 |
| Cow position: | chr5:51503055-51503224 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 263-437 |
| Cow position: | chr5:3058971-3059141 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 263-440 |
| Cow position: | chr5:56385262-56385438 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 132 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 15, 69 |
| Conread position: | 265-384 |
| Cow position: | chr5:3752906-3753020 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 265-410 |
| Cow position: | chr5:27293616-27293473 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 123, 16 |
Show alignments to all cow chromosomes.