Cow genome map
| Conread name: | Pig4-TMW8003J24 |
| Conread position: | 1-247 |
| Cow position: | chr9:57896822-57897057 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 211, 84 |
| Conread position: | 1-248 |
| Cow position: | chr9:18110569-18110806 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 191, 10 |
| Conread position: | 1-266 |
| Cow position: | chr9:10127365-10127632 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 196 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 15, 48 |
| Conread position: | 11-245 |
| Cow position: | chr9:42172907-42173133 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 163, 24 |
| Conread position: | 11-248 |
| Cow position: | chr9:41958502-41958736 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 183 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 215, 152 |
| Conread position: | 11-387 |
| Cow position: | chr9:34568461-34568828 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 277 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 48, 58 |
| Conread position: | 12-206 |
| Cow position: | chr9:214173-214365 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 76, 34 |
| Conread position: | 12-206 |
| Cow position: | chr9:38385577-38385771 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 154 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 35, 152 |
| Conread position: | 12-247 |
| Cow position: | chr9:3724770-3725002 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 180, 28 |
| Conread position: | 12-257 |
| Cow position: | chr9:8740813-8740567 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 26, 131 |
| Conread position: | 13-206 |
| Cow position: | chr9:5071322-5071502 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 13-248 |
| Cow position: | chr9:52787245-52787478 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 33, 98 |
| Conread position: | 17-248 |
| Cow position: | chr9:11102536-11102754 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 195, 32 |
| Conread position: | 18-248 |
| Cow position: | chr9:51311956-51311729 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 81, 22 |
| Conread position: | 18-249 |
| Cow position: | chr9:44218047-44217822 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 18-259 |
| Cow position: | chr9:34310320-34310076 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 171, 145 |
| Conread position: | 18-272 |
| Cow position: | chr9:56253185-56252935 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 187 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 194, 22 |
| Conread position: | 18-437 |
| Cow position: | chr9:64453837-64454263 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 293 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 193, 31 |
| Conread position: | 19-248 |
| Cow position: | chr9:58669664-58669435 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 177 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 175, 21 |
| Conread position: | 19-409 |
| Cow position: | chr9:62330754-62331138 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 21 |
| Conread position: | 20-387 |
| Cow position: | chr9:18093380-18093760 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 70 |
| Conread position: | 22-248 |
| Cow position: | chr9:8600618-8600389 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 178 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 118, 88 |
| Conread position: | 25-245 |
| Cow position: | chr9:44108551-44108766 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 187, 60 |
| Conread position: | 28-249 |
| Cow position: | chr9:19382598-19382388 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 29-249 |
| Cow position: | chr9:17806269-17806055 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 30, 71 |
| Conread position: | 31-266 |
| Cow position: | chr9:56861291-56861047 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 163, 0 |
| Conread position: | 32-249 |
| Cow position: | chr9:9200453-9200663 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 40-247 |
| Cow position: | chr9:20839878-20839678 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 172, 70 |
| Conread position: | 40-257 |
| Cow position: | chr9:2113739-2113953 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 10, 124 |
| Conread position: | 41-214 |
| Cow position: | chr9:10678466-10678298 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 171, 69 |
| Conread position: | 63-244 |
| Cow position: | chr9:48773582-48773411 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 65-246 |
| Cow position: | chr9:15006512-15006687 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 75-257 |
| Cow position: | chr9:32816905-32817085 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 112, 33 |
| Conread position: | 77-206 |
| Cow position: | chr9:47478693-47478819 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 24, 72 |
| Conread position: | 90-358 |
| Cow position: | chr9:31886196-31886471 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 9, 74 |
| Conread position: | 119-393 |
| Cow position: | chr9:5059161-5059437 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 82, 44 |
| Conread position: | 141-359 |
| Cow position: | chr9:16982810-16983022 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 84, 22 |
| Conread position: | 163-410 |
| Cow position: | chr9:36827795-36827559 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 169 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 22, 27 |
| Conread position: | 222-410 |
| Cow position: | chr9:34204174-34203988 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 178, 60 |
| Conread position: | 241-388 |
| Cow position: | chr9:59924580-59924433 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 24, 45 |
| Conread position: | 244-410 |
| Cow position: | chr9:42173163-42173326 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 156, 47 |
| Conread position: | 256-410 |
| Cow position: | chr9:39428789-39428941 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 117 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 144, 35 |
| Conread position: | 257-391 |
| Cow position: | chr9:24837547-24837416 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 260-392 |
| Cow position: | chr9:32817135-32817264 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 100, 20 |
| Conread position: | 263-387 |
| Cow position: | chr9:15033910-15033791 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 263-392 |
| Cow position: | chr9:15006746-15006871 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 100 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 263-398 |
| Cow position: | chr9:14184669-14184543 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 108 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 263-406 |
| Cow position: | chr9:32847893-32847752 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 126, 16 |
| Conread position: | 263-409 |
| Cow position: | chr9:17110777-17110633 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 114 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 137, 29 |
| Conread position: | 263-410 |
| Cow position: | chr9:33059268-33059413 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 126, 17 |
| Conread position: | 263-417 |
| Cow position: | chr9:11102796-11102947 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 137, 28 |
| Conread position: | 263-434 |
| Cow position: | chr9:19382334-19382163 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 100, 20 |
| Conread position: | 264-391 |
| Cow position: | chr9:48773356-48773228 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 97 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 264-406 |
| Cow position: | chr9:18110863-18110998 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 288-410 |
| Cow position: | chr9:21566629-21566752 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 97 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 112, 100 |
Show alignments to all cow chromosomes.