Cow genome map
| Conread name: | Pig4-TMW8003J24 |
| Conread position: | 1-196 |
| Cow position: | chrX:17743814-17744007 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 154 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-205 |
| Cow position: | chrX:17271538-17271333 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 162 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 19, 164 |
| Conread position: | 1-249 |
| Cow position: | chrX:9161339-9161583 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 19, 41 |
| Conread position: | 11-245 |
| Cow position: | chrX:25419398-25419165 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 29 |
| Conread position: | 11-246 |
| Cow position: | chrX:16284184-16283950 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 178 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 187, 114 |
| Conread position: | 12-205 |
| Cow position: | chrX:17888642-17888460 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 173, 73 |
| Conread position: | 12-244 |
| Cow position: | chrX:32743302-32743526 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 181 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 200, 111 |
| Conread position: | 12-387 |
| Cow position: | chrX:5047133-5046743 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 287 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 128, 41 |
| Conread position: | 14-248 |
| Cow position: | chrX:10302107-10302332 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 198, 8 |
| Conread position: | 15-265 |
| Cow position: | chrX:1978272-1978525 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 24, 154 |
| Conread position: | 18-244 |
| Cow position: | chrX:18456162-18456392 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 176 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 151, 204 |
| Conread position: | 18-245 |
| Cow position: | chrX:6563282-6563513 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 105, 56 |
| Conread position: | 18-245 |
| Cow position: | chrX:27176550-27176324 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 132, 67 |
| Conread position: | 18-248 |
| Cow position: | chrX:38840658-38840884 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 177 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 194, 68 |
| Conread position: | 18-256 |
| Cow position: | chrX:8682160-8681923 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 194, 72 |
| Conread position: | 18-265 |
| Cow position: | chrX:28787136-28787367 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 171, 22 |
| Conread position: | 20-248 |
| Cow position: | chrX:160261-160037 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 192, 29 |
| Conread position: | 21-248 |
| Cow position: | chrX:29032190-29032405 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 191, 19 |
| Conread position: | 24-248 |
| Cow position: | chrX:17042466-17042688 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 97 |
| Conread position: | 32-393 |
| Cow position: | chrX:41560455-41560092 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 256 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 135, 78 |
| Conread position: | 42-256 |
| Cow position: | chrX:6479798-6480000 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 22, 12 |
| Conread position: | 63-358 |
| Cow position: | chrX:25966855-25967147 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 211 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 149, 45 |
| Conread position: | 69-247 |
| Cow position: | chrX:30005089-30005260 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 143, 41 |
| Conread position: | 121-410 |
| Cow position: | chrX:31273113-31273400 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 42 |
| Conread position: | 224-380 |
| Cow position: | chrX:22326134-22326286 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 240-392 |
| Cow position: | chrX:38999871-39000029 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 25, 53 |
| Conread position: | 249-392 |
| Cow position: | chrX:2300963-2301102 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 257-384 |
| Cow position: | chrX:25338234-25338358 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 101 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 257-388 |
| Cow position: | chrX:15305253-15305121 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 99 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 257-391 |
| Cow position: | chrX:27176266-27176135 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 132, 22 |
| Conread position: | 257-392 |
| Cow position: | chrX:17042729-17042861 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 260-391 |
| Cow position: | chrX:21664671-21664543 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 260-409 |
| Cow position: | chrX:7497292-7497430 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 261-410 |
| Cow position: | chrX:488730-488873 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 116 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 263-387 |
| Cow position: | chrX:27287684-27287563 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 263-393 |
| Cow position: | chrX:7425518-7425644 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 102 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 263-399 |
| Cow position: | chrX:159707-159574 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 100, 28 |
| Conread position: | 263-409 |
| Cow position: | chrX:33802955-33802811 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 126, 28 |
| Conread position: | 263-410 |
| Cow position: | chrX:9539375-9539517 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 263-410 |
| Cow position: | chrX:34470766-34470908 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 100, 18 |
| Conread position: | 265-386 |
| Cow position: | chrX:16419201-16419319 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 99 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 265-395 |
| Cow position: | chrX:46028707-46028581 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 266-387 |
| Cow position: | chrX:3951096-3951214 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 97 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 266-392 |
| Cow position: | chrX:10289571-10289449 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 310-406 |
| Cow position: | chrX:4414440-4414535 (view UCSC Genome Browser custom track) |
| Alignm length: | 97 |
| Alignm identity: | 81 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 92, 0 |
Show alignments to all cow chromosomes.