Cow genome map

Conread name: Pig4-TMW8006O17

Conread position: 1-166
Cow position: chr11:9154644-9154477 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 135
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 24, 107

Conread position: 1-190
Cow position: chr11:3790338-3790527 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 148
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 24, 114

Conread position: 1-275
Cow position: chr11:46781788-46781509 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 14

Conread position: 1-404
Cow position: chr11:66568592-66569003 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 278
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 24, 40

Conread position: 1-461
Cow position: chr11:79749341-79748886 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 309

Conread position: 1-467
Cow position: chr11:24395876-24396334 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 309

Conread position: 1-487
Cow position: chr11:60604638-60605113 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 82

Conread position: 1-488
Cow position: chr11:8266357-8266838 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 305

Conread position: 1-490
Cow position: chr11:60223144-60222660 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 308

Conread position: 1-509
Cow position: chr11:32478270-32477764 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 308

Conread position: 1-518
Cow position: chr11:64353780-64353266 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 308

Conread position: 1-526
Cow position: chr11:41177470-41177980 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 148

Conread position: 1-533
Cow position: chr11:67954595-67954058 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 259

Conread position: 1-565
Cow position: chr11:52462824-52463392 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 134

Conread position: 1-583
Cow position: chr11:27056167-27055589 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 136

Conread position: 1-591
Cow position: chr11:50834216-50833630 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 122

Conread position: 1-592
Cow position: chr11:26534382-26534962 (view UCSC Genome Browser custom track)
Alignm length: 610
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 97

Conread position: 1-598
Cow position: chr11:1493303-1492724 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 134

Conread position: 1-617
Cow position: chr11:75511650-75511033 (view UCSC Genome Browser custom track)
Alignm length: 632
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 311

Conread position: 1-623
Cow position: chr11:49551466-49550856 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 53

Conread position: 1-625
Cow position: chr11:27922335-27922959 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 308

Conread position: 1-626
Cow position: chr11:25809201-25808586 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 83

Conread position: 1-630
Cow position: chr11:4205723-4206340 (view UCSC Genome Browser custom track)
Alignm length: 642
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 169

Conread position: 1-631
Cow position: chr11:11256614-11257216 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 260

Conread position: 1-635
Cow position: chr11:38068811-38069472 (view UCSC Genome Browser custom track)
Alignm length: 664
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 535

Conread position: 1-635
Cow position: chr11:54728007-54728636 (view UCSC Genome Browser custom track)
Alignm length: 657
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 75

Conread position: 1-637
Cow position: chr11:7680506-7681133 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 221

Conread position: 1-637
Cow position: chr11:9707690-9708323 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 308

Conread position: 1-637
Cow position: chr11:10093425-10094044 (view UCSC Genome Browser custom track)
Alignm length: 650
Alignm identity: 486
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 85

Conread position: 1-637
Cow position: chr11:11591526-11592155 (view UCSC Genome Browser custom track)
Alignm length: 651
Alignm identity: 501
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 133

Conread position: 1-637
Cow position: chr11:12317528-12316895 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 497
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 308

Conread position: 1-637
Cow position: chr11:17105147-17104531 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 498
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 308

Conread position: 1-637
Cow position: chr11:57625635-57625015 (view UCSC Genome Browser custom track)
Alignm length: 652
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 179

Conread position: 1-638
Cow position: chr11:18147003-18146367 (view UCSC Genome Browser custom track)
Alignm length: 664
Alignm identity: 479
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 205

Conread position: 1-649
Cow position: chr11:53429479-53428834 (view UCSC Genome Browser custom track)
Alignm length: 663
Alignm identity: 514
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 75

Conread position: 1-649
Cow position: chr11:74928342-74928985 (view UCSC Genome Browser custom track)
Alignm length: 663
Alignm identity: 496
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 133

Conread position: 1-651
Cow position: chr11:8245707-8246374 (view UCSC Genome Browser custom track)
Alignm length: 676
Alignm identity: 496
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 365

Conread position: 1-651
Cow position: chr11:31892497-31893130 (view UCSC Genome Browser custom track)
Alignm length: 662
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 229

Conread position: 1-651
Cow position: chr11:56462904-56463554 (view UCSC Genome Browser custom track)
Alignm length: 666
Alignm identity: 507
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 307

Conread position: 1-651
Cow position: chr11:67863733-67863099 (view UCSC Genome Browser custom track)
Alignm length: 664
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 176

Conread position: 1-652
Cow position: chr11:41101468-41102103 (view UCSC Genome Browser custom track)
Alignm length: 663
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 112

Conread position: 1-656
Cow position: chr11:25564298-25564947 (view UCSC Genome Browser custom track)
Alignm length: 672
Alignm identity: 508
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 241

Conread position: 1-656
Cow position: chr11:38640493-38641140 (view UCSC Genome Browser custom track)
Alignm length: 668
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 308

Conread position: 1-656
Cow position: chr11:41600146-41599493 (view UCSC Genome Browser custom track)
Alignm length: 674
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 308

Conread position: 1-656
Cow position: chr11:44232980-44233613 (view UCSC Genome Browser custom track)
Alignm length: 663
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 171

Conread position: 1-656
Cow position: chr11:49171957-49171300 (view UCSC Genome Browser custom track)
Alignm length: 677
Alignm identity: 505
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 309

Conread position: 1-656
Cow position: chr11:58050378-58049732 (view UCSC Genome Browser custom track)
Alignm length: 670
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 88

Conread position: 1-656
Cow position: chr11:84773713-84774363 (view UCSC Genome Browser custom track)
Alignm length: 673
Alignm identity: 479
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 101

Conread position: 1-659
Cow position: chr11:41168152-41167495 (view UCSC Genome Browser custom track)
Alignm length: 673
Alignm identity: 512
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 308

Conread position: 1-660
Cow position: chr11:1505454-1504796 (view UCSC Genome Browser custom track)
Alignm length: 675
Alignm identity: 497
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 89

Conread position: 1-660
Cow position: chr11:31865160-31865836 (view UCSC Genome Browser custom track)
Alignm length: 697
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 323

Conread position: 1-660
Cow position: chr11:38574940-38574285 (view UCSC Genome Browser custom track)
Alignm length: 673
Alignm identity: 505
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 238

Conread position: 1-663
Cow position: chr11:50511130-50510469 (view UCSC Genome Browser custom track)
Alignm length: 677
Alignm identity: 511
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 308

Conread position: 1-664
Cow position: chr11:417911-417269 (view UCSC Genome Browser custom track)
Alignm length: 676
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 129

Conread position: 1-664
Cow position: chr11:4024799-4024151 (view UCSC Genome Browser custom track)
Alignm length: 676
Alignm identity: 512
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 100

Conread position: 1-664
Cow position: chr11:4267609-4266951 (view UCSC Genome Browser custom track)
Alignm length: 676
Alignm identity: 514
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 238

Conread position: 1-664
Cow position: chr11:6343003-6343663 (view UCSC Genome Browser custom track)
Alignm length: 678
Alignm identity: 515
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 240

Conread position: 1-664
Cow position: chr11:8444445-8443787 (view UCSC Genome Browser custom track)
Alignm length: 678
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 308

Conread position: 1-664
Cow position: chr11:10699204-10698542 (view UCSC Genome Browser custom track)
Alignm length: 678
Alignm identity: 515
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 308

Conread position: 1-664
Cow position: chr11:11990531-11991203 (view UCSC Genome Browser custom track)
Alignm length: 689
Alignm identity: 530
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 317

Conread position: 1-664
Cow position: chr11:12354350-12353688 (view UCSC Genome Browser custom track)
Alignm length: 678
Alignm identity: 515
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 309

Conread position: 1-664
Cow position: chr11:15835463-15836116 (view UCSC Genome Browser custom track)
Alignm length: 678
Alignm identity: 509
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 199

Conread position: 1-664
Cow position: chr11:17548700-17549362 (view UCSC Genome Browser custom track)
Alignm length: 678
Alignm identity: 512
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 308

Conread position: 1-664
Cow position: chr11:19061532-19060870 (view UCSC Genome Browser custom track)
Alignm length: 680
Alignm identity: 518
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 308

Conread position: 1-664
Cow position: chr11:19099941-19099281 (view UCSC Genome Browser custom track)
Alignm length: 679
Alignm identity: 523
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 116

Conread position: 1-664
Cow position: chr11:26122379-26121716 (view UCSC Genome Browser custom track)
Alignm length: 680
Alignm identity: 521
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 309

Conread position: 1-664
Cow position: chr11:26550023-26550680 (view UCSC Genome Browser custom track)
Alignm length: 681
Alignm identity: 518
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 134

Conread position: 1-664
Cow position: chr11:27725359-27724697 (view UCSC Genome Browser custom track)
Alignm length: 678
Alignm identity: 510
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 308

Conread position: 1-664
Cow position: chr11:28125057-28125717 (view UCSC Genome Browser custom track)
Alignm length: 678
Alignm identity: 509
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 308

Conread position: 1-664
Cow position: chr11:28227237-28226574 (view UCSC Genome Browser custom track)
Alignm length: 679
Alignm identity: 512
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 308

Conread position: 1-664
Cow position: chr11:29663507-29662859 (view UCSC Genome Browser custom track)
Alignm length: 678
Alignm identity: 511
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 295

Conread position: 1-664
Cow position: chr11:30201150-30200495 (view UCSC Genome Browser custom track)
Alignm length: 674
Alignm identity: 514
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 120

Conread position: 1-664
Cow position: chr11:31929011-31929641 (view UCSC Genome Browser custom track)
Alignm length: 672
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 7

Conread position: 1-664
Cow position: chr11:32078237-32077579 (view UCSC Genome Browser custom track)
Alignm length: 678
Alignm identity: 510
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 223

Conread position: 1-664
Cow position: chr11:32454603-32455258 (view UCSC Genome Browser custom track)
Alignm length: 678
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 122

Conread position: 1-664
Cow position: chr11:33602086-33601435 (view UCSC Genome Browser custom track)
Alignm length: 678
Alignm identity: 506
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 309

Conread position: 1-664
Cow position: chr11:35142789-35142128 (view UCSC Genome Browser custom track)
Alignm length: 680
Alignm identity: 510
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 191

Conread position: 1-664
Cow position: chr11:35542526-35541866 (view UCSC Genome Browser custom track)
Alignm length: 677
Alignm identity: 509
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 308

Conread position: 1-664
Cow position: chr11:35738800-35738140 (view UCSC Genome Browser custom track)
Alignm length: 678
Alignm identity: 529
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 308

Conread position: 1-664
Cow position: chr11:40403217-40402570 (view UCSC Genome Browser custom track)
Alignm length: 676
Alignm identity: 493
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 289

Conread position: 1-664
Cow position: chr11:40773486-40772866 (view UCSC Genome Browser custom track)
Alignm length: 672
Alignm identity: 497
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 52

Conread position: 1-664
Cow position: chr11:41313838-41314499 (view UCSC Genome Browser custom track)
Alignm length: 677
Alignm identity: 508
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 308

Conread position: 1-664
Cow position: chr11:43511429-43510771 (view UCSC Genome Browser custom track)
Alignm length: 678
Alignm identity: 514
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 295

Conread position: 1-664
Cow position: chr11:44254617-44255275 (view UCSC Genome Browser custom track)
Alignm length: 676
Alignm identity: 512
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 307

Conread position: 1-664
Cow position: chr11:47973309-47972648 (view UCSC Genome Browser custom track)
Alignm length: 678
Alignm identity: 514
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 146

Conread position: 1-664
Cow position: chr11:48168519-48167877 (view UCSC Genome Browser custom track)
Alignm length: 675
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 92

Conread position: 1-664
Cow position: chr11:58136259-58136921 (view UCSC Genome Browser custom track)
Alignm length: 678
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 308

Conread position: 1-664
Cow position: chr11:58139252-58139898 (view UCSC Genome Browser custom track)
Alignm length: 675
Alignm identity: 519
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 192

Conread position: 1-664
Cow position: chr11:61398071-61397417 (view UCSC Genome Browser custom track)
Alignm length: 676
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 306

Conread position: 1-664
Cow position: chr11:63390934-63390278 (view UCSC Genome Browser custom track)
Alignm length: 675
Alignm identity: 515
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 305

Conread position: 1-664
Cow position: chr11:63861094-63860440 (view UCSC Genome Browser custom track)
Alignm length: 679
Alignm identity: 520
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 150

Conread position: 1-664
Cow position: chr11:65281561-65282214 (view UCSC Genome Browser custom track)
Alignm length: 679
Alignm identity: 526
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 308

Conread position: 1-664
Cow position: chr11:67296466-67295803 (view UCSC Genome Browser custom track)
Alignm length: 678
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 138

Conread position: 1-664
Cow position: chr11:71332044-71332703 (view UCSC Genome Browser custom track)
Alignm length: 679
Alignm identity: 522
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 187

Conread position: 1-664
Cow position: chr11:84966656-84967312 (view UCSC Genome Browser custom track)
Alignm length: 678
Alignm identity: 512
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 308

Conread position: 1-664
Cow position: chr11:85391303-85390658 (view UCSC Genome Browser custom track)
Alignm length: 674
Alignm identity: 517
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 158

Conread position: 2-426
Cow position: chr11:14650308-14650733 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 237

Conread position: 2-600
Cow position: chr11:26400025-26400618 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 75

Conread position: 2-649
Cow position: chr11:75402954-75402333 (view UCSC Genome Browser custom track)
Alignm length: 658
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 80

Conread position: 2-664
Cow position: chr11:21897148-21896498 (view UCSC Genome Browser custom track)
Alignm length: 681
Alignm identity: 487
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 102

Conread position: 2-664
Cow position: chr11:44580687-44580030 (view UCSC Genome Browser custom track)
Alignm length: 676
Alignm identity: 507
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 214

Conread position: 2-664
Cow position: chr11:73799156-73798498 (view UCSC Genome Browser custom track)
Alignm length: 678
Alignm identity: 506
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 308

Conread position: 3-457
Cow position: chr11:61848189-61847741 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 306

Conread position: 3-506
Cow position: chr11:62224803-62225301 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 204

Conread position: 3-591
Cow position: chr11:63653135-63652548 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 210

Conread position: 3-617
Cow position: chr11:48981840-48982444 (view UCSC Genome Browser custom track)
Alignm length: 631
Alignm identity: 460
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 105

Conread position: 3-637
Cow position: chr11:10958375-10959004 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 237

Conread position: 3-637
Cow position: chr11:86578473-86579100 (view UCSC Genome Browser custom track)
Alignm length: 652
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 181

Conread position: 3-649
Cow position: chr11:17280037-17279418 (view UCSC Genome Browser custom track)
Alignm length: 666
Alignm identity: 464
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 191

Conread position: 3-649
Cow position: chr11:76565994-76566650 (view UCSC Genome Browser custom track)
Alignm length: 667
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 73

Conread position: 3-649
Cow position: chr11:83284441-83285070 (view UCSC Genome Browser custom track)
Alignm length: 656
Alignm identity: 496
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 196

Conread position: 3-656
Cow position: chr11:2568129-2567481 (view UCSC Genome Browser custom track)
Alignm length: 671
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 94

Conread position: 3-658
Cow position: chr11:40486706-40487351 (view UCSC Genome Browser custom track)
Alignm length: 668
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 34

Conread position: 3-660
Cow position: chr11:3495587-3496243 (view UCSC Genome Browser custom track)
Alignm length: 672
Alignm identity: 509
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 306

Conread position: 3-660
Cow position: chr11:72368597-72369254 (view UCSC Genome Browser custom track)
Alignm length: 673
Alignm identity: 506
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 301

Conread position: 3-664
Cow position: chr11:7121419-7120745 (view UCSC Genome Browser custom track)
Alignm length: 690
Alignm identity: 516
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 306

Conread position: 3-664
Cow position: chr11:20731678-20731019 (view UCSC Genome Browser custom track)
Alignm length: 676
Alignm identity: 511
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 306

Conread position: 3-664
Cow position: chr11:27659794-27660441 (view UCSC Genome Browser custom track)
Alignm length: 685
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 65

Conread position: 3-664
Cow position: chr11:44154533-44153879 (view UCSC Genome Browser custom track)
Alignm length: 675
Alignm identity: 517
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 305

Conread position: 3-664
Cow position: chr11:67453199-67453857 (view UCSC Genome Browser custom track)
Alignm length: 676
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 306

Conread position: 5-521
Cow position: chr11:44516622-44516120 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 303

Conread position: 6-655
Cow position: chr11:27834211-27833565 (view UCSC Genome Browser custom track)
Alignm length: 666
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 303

Conread position: 7-355
Cow position: chr11:83287181-83286830 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 301

Conread position: 7-664
Cow position: chr11:38832930-38832275 (view UCSC Genome Browser custom track)
Alignm length: 671
Alignm identity: 505
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 305

Conread position: 8-664
Cow position: chr11:30928931-30929586 (view UCSC Genome Browser custom track)
Alignm length: 671
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 301

Conread position: 13-561
Cow position: chr11:29613946-29614491 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 38

Conread position: 13-648
Cow position: chr11:260590-259957 (view UCSC Genome Browser custom track)
Alignm length: 654
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 129

Conread position: 20-623
Cow position: chr11:49556761-49556169 (view UCSC Genome Browser custom track)
Alignm length: 619
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 170

Conread position: 24-664
Cow position: chr11:39151168-39151804 (view UCSC Genome Browser custom track)
Alignm length: 654
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 99

Conread position: 26-664
Cow position: chr11:18921015-18920394 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 498
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 279

Conread position: 26-664
Cow position: chr11:67920757-67920138 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 365, 19

Conread position: 27-651
Cow position: chr11:58398902-58399514 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 113

Conread position: 27-664
Cow position: chr11:52846051-52846679 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 358, 228

Conread position: 37-641
Cow position: chr11:33000466-33001050 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 90

Conread position: 37-664
Cow position: chr11:5482861-5482242 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 51

Conread position: 42-657
Cow position: chr11:16230065-16229460 (view UCSC Genome Browser custom track)
Alignm length: 629
Alignm identity: 482
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 99

Conread position: 46-664
Cow position: chr11:41261335-41260724 (view UCSC Genome Browser custom track)
Alignm length: 627
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 345, 257

Conread position: 52-631
Cow position: chr11:22934015-22933458 (view UCSC Genome Browser custom track)
Alignm length: 585
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 219, 28

Conread position: 70-641
Cow position: chr11:21729399-21728844 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 97

Conread position: 71-314
Cow position: chr11:46687619-46687863 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 0

Conread position: 74-386
Cow position: chr11:16592207-16592508 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 221
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 164, 10

Conread position: 74-664
Cow position: chr11:7719892-7719311 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 17

Conread position: 75-653
Cow position: chr11:8830153-8829594 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 163

Conread position: 75-656
Cow position: chr11:58805194-58804628 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 414, 84

Conread position: 76-649
Cow position: chr11:26068495-26067924 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 52

Conread position: 80-638
Cow position: chr11:48485447-48484898 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 311, 147

Conread position: 81-664
Cow position: chr11:12177715-12178292 (view UCSC Genome Browser custom track)
Alignm length: 593
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 223

Conread position: 82-660
Cow position: chr11:14260329-14259761 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 214

Conread position: 84-654
Cow position: chr11:44106307-44106877 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 463
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 217

Conread position: 85-638
Cow position: chr11:80789764-80789214 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 72

Conread position: 85-664
Cow position: chr11:2285345-2285917 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 304, 218

Conread position: 89-664
Cow position: chr11:24494172-24493604 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 302, 214

Conread position: 91-615
Cow position: chr11:61426332-61426827 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 298, 162

Conread position: 94-637
Cow position: chr11:28631174-28631708 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 297, 209

Conread position: 97-658
Cow position: chr11:21471277-21471819 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 295, 180

Conread position: 99-664
Cow position: chr11:37279929-37279377 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 10

Conread position: 102-651
Cow position: chr11:9387985-9388528 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 163

Conread position: 102-651
Cow position: chr11:15995133-15995683 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 113

Conread position: 109-664
Cow position: chr11:17853749-17854298 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 195

Conread position: 110-365
Cow position: chr11:64904055-64903801 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 192
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 167, 27

Conread position: 111-583
Cow position: chr11:3368348-3367880 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 322
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 91, 53

Conread position: 115-664
Cow position: chr11:22618284-22617742 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 276, 188

Conread position: 119-637
Cow position: chr11:32876277-32875768 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 272, 184

Conread position: 122-651
Cow position: chr11:40457845-40458366 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 256, 87

Conread position: 123-634
Cow position: chr11:1667296-1667793 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 181

Conread position: 124-495
Cow position: chr11:35861978-35861624 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 265, 83

Conread position: 127-607
Cow position: chr11:81067423-81067884 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 359, 177

Conread position: 129-656
Cow position: chr11:3795915-3796414 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 263, 98

Conread position: 135-620
Cow position: chr11:17980609-17980136 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 250, 146

Conread position: 135-664
Cow position: chr11:13087985-13087463 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 254, 168

Conread position: 135-664
Cow position: chr11:62791577-62792098 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 254, 168

Conread position: 137-579
Cow position: chr11:38793271-38793694 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 349, 57

Conread position: 138-664
Cow position: chr11:5273887-5273370 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 251, 19

Conread position: 141-664
Cow position: chr11:25335828-25336342 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 250, 155

Conread position: 144-631
Cow position: chr11:41106697-41106225 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 241, 159

Conread position: 144-637
Cow position: chr11:42357896-42358366 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 247, 93

Conread position: 144-664
Cow position: chr11:10872134-10871621 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 247, 159

Conread position: 145-664
Cow position: chr11:23883012-23883551 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 318

Conread position: 148-663
Cow position: chr11:19507026-19507530 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 243, 64

Conread position: 153-664
Cow position: chr11:26593077-26592573 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 236, 150

Conread position: 157-649
Cow position: chr11:43362009-43361544 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 234, 111

Conread position: 157-664
Cow position: chr11:15495094-15495592 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 234, 50

Conread position: 159-656
Cow position: chr11:30056918-30057390 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 54

Conread position: 159-663
Cow position: chr11:75353909-75354409 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 144

Conread position: 163-590
Cow position: chr11:59444836-59444418 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 228, 140

Conread position: 167-660
Cow position: chr11:67348388-67347921 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 36

Conread position: 169-637
Cow position: chr11:17998215-17997759 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 64

Conread position: 171-586
Cow position: chr11:12077683-12077280 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 92

Conread position: 174-504
Cow position: chr11:23896241-23896563 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 129

Conread position: 176-487
Cow position: chr11:8494231-8494524 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 232
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 107, 31

Conread position: 176-664
Cow position: chr11:41094139-41093658 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 127

Conread position: 178-525
Cow position: chr11:57185090-57185428 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 125

Conread position: 179-654
Cow position: chr11:8843871-8844374 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 221

Conread position: 182-664
Cow position: chr11:44915957-44915481 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 54

Conread position: 183-656
Cow position: chr11:9154166-9153707 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 120

Conread position: 183-664
Cow position: chr11:30776693-30777167 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 120

Conread position: 183-664
Cow position: chr11:34638774-34638300 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 120

Conread position: 184-656
Cow position: chr11:35242139-35241683 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 122

Conread position: 184-664
Cow position: chr11:30255161-30255642 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 122

Conread position: 194-649
Cow position: chr11:12763452-12763000 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 113

Conread position: 195-656
Cow position: chr11:64478437-64477978 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 296
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 88, 130

Conread position: 195-664
Cow position: chr11:16548208-16547746 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 108

Conread position: 195-664
Cow position: chr11:38599972-38599510 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 108

Conread position: 195-664
Cow position: chr11:73137333-73137782 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 108

Conread position: 196-553
Cow position: chr11:52127952-52128300 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 107

Conread position: 196-664
Cow position: chr11:25759496-25759946 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 107

Conread position: 198-649
Cow position: chr11:76960207-76960636 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 302
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 39, 31

Conread position: 202-649
Cow position: chr11:27938359-27938780 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 14

Conread position: 203-492
Cow position: chr11:33319366-33319092 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 213
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 80, 35

Conread position: 204-664
Cow position: chr11:65760856-65760403 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 100

Conread position: 205-459
Cow position: chr11:19271510-19271270 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 198
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 184, 82

Conread position: 205-664
Cow position: chr11:24334241-24333789 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 98

Conread position: 208-664
Cow position: chr11:20285863-20285414 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 95

Conread position: 209-505
Cow position: chr11:18438704-18438991 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 94

Conread position: 219-651
Cow position: chr11:77746441-77746017 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 71

Conread position: 220-649
Cow position: chr11:17782260-17781842 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 83

Conread position: 223-664
Cow position: chr11:3238071-3238506 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 80

Conread position: 225-664
Cow position: chr11:83000801-83001233 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 78

Conread position: 231-664
Cow position: chr11:54302317-54302741 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 11

Conread position: 232-664
Cow position: chr11:63478630-63479054 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 71

Conread position: 234-634
Cow position: chr11:9870282-9870672 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 273
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 125, 62

Conread position: 236-660
Cow position: chr11:11316049-11315629 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 67

Conread position: 236-664
Cow position: chr11:67849198-67848768 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 68

Conread position: 237-606
Cow position: chr11:13062623-13062263 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 223
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 154, 66

Conread position: 239-664
Cow position: chr11:74990406-74990824 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 64

Conread position: 243-521
Cow position: chr11:10043293-10043024 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 214
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 148, 60

Conread position: 245-660
Cow position: chr11:4675823-4675435 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 0

Conread position: 246-664
Cow position: chr11:80591153-80591561 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 57

Conread position: 252-630
Cow position: chr11:49411773-49411391 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 169

Conread position: 258-531
Cow position: chr11:65852352-65852088 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 214
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 133, 45

Conread position: 258-637
Cow position: chr11:18105881-18105510 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 264
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 133, 46

Conread position: 260-664
Cow position: chr11:46781261-46780866 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 43

Conread position: 263-664
Cow position: chr11:77748878-77749255 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 31

Conread position: 265-574
Cow position: chr11:35426008-35425723 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 235
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 109, 38

Conread position: 278-629
Cow position: chr11:12009895-12010237 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 231
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 113, 39

Conread position: 304-630
Cow position: chr11:68130253-68130569 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 20

Conread position: 305-656
Cow position: chr11:3999653-3999309 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 261
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 24, 114

Conread position: 305-664
Cow position: chr11:36930693-36930330 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 105

Conread position: 311-631
Cow position: chr11:26561475-26561142 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 218
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 80, 101

Conread position: 312-630
Cow position: chr11:4053489-4053184 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 28

Conread position: 315-664
Cow position: chr11:70030270-70030623 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 103

Conread position: 317-621
Cow position: chr11:81780058-81779751 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 209
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 89, 116

Conread position: 319-426
Cow position: chr11:24873121-24873012 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 92
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 70, 0

Conread position: 319-496
Cow position: chr11:4396937-4396761 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 136
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 70, 119

Conread position: 319-551
Cow position: chr11:81317023-81316791 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 172
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 72, 86

Conread position: 319-608
Cow position: chr11:59583283-59583576 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 120

Conread position: 319-613
Cow position: chr11:52515378-52515658 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 216
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 66, 0

Conread position: 319-615
Cow position: chr11:15988141-15988441 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 120

Conread position: 319-634
Cow position: chr11:59471633-59471948 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 216
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 72, 26

Conread position: 319-637
Cow position: chr11:23494604-23494920 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 112

Conread position: 319-638
Cow position: chr11:56652386-56652066 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 66

Conread position: 319-658
Cow position: chr11:63507361-63507706 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 100

Conread position: 319-664
Cow position: chr11:7229213-7229564 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 111

Conread position: 319-664
Cow position: chr11:8366413-8366764 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 120

Conread position: 319-664
Cow position: chr11:21619993-21620345 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 119

Conread position: 319-664
Cow position: chr11:30700347-30700698 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 130

Conread position: 319-664
Cow position: chr11:31836043-31836388 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 62

Conread position: 319-664
Cow position: chr11:38505378-38505027 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 120

Conread position: 319-664
Cow position: chr11:62009949-62009597 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 120

Conread position: 319-664
Cow position: chr11:66390154-66389811 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 125

Conread position: 319-664
Cow position: chr11:75711400-75711049 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 120

Conread position: 320-658
Cow position: chr11:67744241-67744579 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 245
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 71, 91

Conread position: 321-637
Cow position: chr11:26482427-26482748 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 82

Conread position: 323-637
Cow position: chr11:13589432-13589124 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 210
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 165, 19

Conread position: 323-649
Cow position: chr11:58211529-58211209 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 218
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 192, 83

Conread position: 326-549
Cow position: chr11:31487092-31487311 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 168
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 120, 0

Conread position: 326-638
Cow position: chr11:49935888-49935572 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 122

Conread position: 326-648
Cow position: chr11:30164432-30164759 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 112

Conread position: 326-664
Cow position: chr11:10850974-10851317 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 104

Conread position: 326-664
Cow position: chr11:15047319-15047663 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 113

Conread position: 327-574
Cow position: chr11:18147766-18147518 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 168
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 138, 98

Conread position: 327-637
Cow position: chr11:51034137-51034451 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 112

Conread position: 327-645
Cow position: chr11:84532400-84532082 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 63

Conread position: 327-661
Cow position: chr11:36453790-36453470 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 216
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 218, 49

Conread position: 329-634
Cow position: chr11:45155884-45155576 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 109

Conread position: 331-651
Cow position: chr11:4061074-4060762 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 212
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 72, 64

Conread position: 333-571
Cow position: chr11:15128643-15128889 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 185
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 13, 147

Conread position: 336-637
Cow position: chr11:31834391-31834086 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 103

Conread position: 337-664
Cow position: chr11:7151871-7152200 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 111

Conread position: 339-637
Cow position: chr11:69403348-69403048 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 95

Conread position: 340-609
Cow position: chr11:87155129-87154863 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 97

Conread position: 340-640
Cow position: chr11:21853377-21853073 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 100

Conread position: 343-664
Cow position: chr11:32762329-32762655 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 95

Conread position: 346-649
Cow position: chr11:34297368-34297669 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 226
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 45, 93

Conread position: 354-637
Cow position: chr11:16119054-16118773 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 194
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 38, 90

Conread position: 356-584
Cow position: chr11:66899207-66898975 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 167
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 36, 64

Conread position: 356-664
Cow position: chr11:2294170-2293856 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 83

Conread position: 360-654
Cow position: chr11:3230218-3230510 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 212
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 31, 77

Conread position: 362-509
Cow position: chr11:43913411-43913576 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 128
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 19, 0

Conread position: 362-637
Cow position: chr11:38235873-38235595 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 76

Conread position: 363-631
Cow position: chr11:46412531-46412804 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 198
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 29, 74

Conread position: 369-656
Cow position: chr11:1626251-1625966 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 202
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 22, 79

Conread position: 369-664
Cow position: chr11:44870429-44870723 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 61

Conread position: 373-637
Cow position: chr11:47758081-47757813 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 67

Conread position: 376-637
Cow position: chr11:21372171-21371906 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 64

Conread position: 382-619
Cow position: chr11:33688128-33687892 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 180
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 9, 59

Conread position: 382-658
Cow position: chr11:53772600-53772865 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 210
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 100, 54

Conread position: 386-664
Cow position: chr11:70602355-70602079 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 32

Conread position: 388-595
Cow position: chr11:32978078-32977868 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 167
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 69, 50

Conread position: 388-596
Cow position: chr11:32956892-32956681 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 167
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 69, 50

Conread position: 388-664
Cow position: chr11:43917358-43917638 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 67

Conread position: 388-664
Cow position: chr11:77034168-77033888 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 40

Conread position: 396-637
Cow position: chr11:70424323-70424565 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 184
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 6, 23

Conread position: 397-664
Cow position: chr11:63261274-63261002 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 50

Conread position: 401-664
Cow position: chr11:38842563-38842824 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 198
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 89, 46

Conread position: 402-664
Cow position: chr11:52298225-52297957 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 190
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 86, 36

Conread position: 414-634
Cow position: chr11:66859038-66858814 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 171
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 75, 31

Conread position: 437-656
Cow position: chr11:37069275-37069044 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 177
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 43, 75

Conread position: 441-656
Cow position: chr11:42380413-42380628 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 153
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 43, 57

Conread position: 441-660
Cow position: chr11:14650259-14650036 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 167
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 46, 7

Conread position: 441-660
Cow position: chr11:76370864-76370644 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 169
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 48, 74

Conread position: 442-619
Cow position: chr11:33687496-33687315 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 141
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 43, 74

Conread position: 466-650
Cow position: chr11:49037412-49037223 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 139
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 27, 0

Conread position: 468-631
Cow position: chr11:21820397-21820232 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 132
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 21, 47

Conread position: 468-649
Cow position: chr11:3263826-3264012 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 137
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 18, 42

Conread position: 472-631
Cow position: chr11:28394078-28394238 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 125
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 16, 42

Conread position: 485-649
Cow position: chr11:35861350-35861187 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 128
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 26, 0

Conread position: 487-660
Cow position: chr11:45632932-45632756 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 137
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 152, 24

Conread position: 494-660
Cow position: chr11:75196111-75195944 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 128
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 145, 17

Conread position: 500-635
Cow position: chr11:79995712-79995577 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 106
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.