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Cow genome map

           
Conread name:
           
Pig4-TMW8006O17
        

               
Conread position:
               
1-139
               

               
Cow position:
               
chr21:18979811-18979955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
1-222
               

               
Cow position:
               
chr21:27375134-27375364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
24, 14
               

               
Conread position:
               
1-250
               

               
Cow position:
               
chr21:23292324-23292080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
30, 207
               

               
Conread position:
               
1-405
               

               
Cow position:
               
chr21:38907192-38907586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
24, 76
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chr21:24298198-24297783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 115
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr21:35024368-35024785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 308
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr21:47943960-47944382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 314
               

               
Conread position:
               
1-509
               

               
Cow position:
               
chr21:34181092-34180587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
395
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 308
               

               
Conread position:
               
1-552
               

               
Cow position:
               
chr21:28729646-28730186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 19
               

               
Conread position:
               
1-583
               

               
Cow position:
               
chr21:24083350-24082787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
591
               

               
Alignm identity:
               
395
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 136
               

               
Conread position:
               
1-594
               

               
Cow position:
               
chr21:11405875-11405285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
606
               

               
Alignm identity:
               
463
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 308
               

               
Conread position:
               
1-630
               

               
Cow position:
               
chr21:4898957-4898333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
643
               

               
Alignm identity:
               
486
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 194
               

               
Conread position:
               
1-630
               

               
Cow position:
               
chr21:27620488-27619880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
637
               

               
Alignm identity:
               
474
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 153
               

               
Conread position:
               
1-631
               

               
Cow position:
               
chr21:24886661-24887277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
642
               

               
Alignm identity:
               
449
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 140
               

               
Conread position:
               
1-631
               

               
Cow position:
               
chr21:35576597-35575985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
645
               

               
Alignm identity:
               
438
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 83
               

               
Conread position:
               
1-631
               

               
Cow position:
               
chr21:48292340-48291723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
640
               

               
Alignm identity:
               
476
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 133
               

               
Conread position:
               
1-635
               

               
Cow position:
               
chr21:27148546-27147916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
647
               

               
Alignm identity:
               
502
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 308
               

               
Conread position:
               
1-635
               

               
Cow position:
               
chr21:32533821-32534456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
667
               

               
Alignm identity:
               
481
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 285
               

               
Conread position:
               
1-637
               

               
Cow position:
               
chr21:26634222-26633592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
651
               

               
Alignm identity:
               
497
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 239
               

               
Conread position:
               
1-637
               

               
Cow position:
               
chr21:30966938-30966305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
649
               

               
Alignm identity:
               
495
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 308
               

               
Conread position:
               
1-637
               

               
Cow position:
               
chr21:47361163-47360535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
648
               

               
Alignm identity:
               
454
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 239
               

               
Conread position:
               
1-638
               

               
Cow position:
               
chr21:23549248-23548628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
649
               

               
Alignm identity:
               
439
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 217
               

               
Conread position:
               
1-649
               

               
Cow position:
               
chr21:2768833-2768193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
662
               

               
Alignm identity:
               
499
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 107
               

               
Conread position:
               
1-649
               

               
Cow position:
               
chr21:6622830-6623465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
664
               

               
Alignm identity:
               
491
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 214
               

               
Conread position:
               
1-649
               

               
Cow position:
               
chr21:31252008-31252638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
660
               

               
Alignm identity:
               
483
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 201
               

               
Conread position:
               
1-656
               

               
Cow position:
               
chr21:4733524-4732881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
666
               

               
Alignm identity:
               
476
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 178
               

               
Conread position:
               
1-656
               

               
Cow position:
               
chr21:24827127-24826472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
679
               

               
Alignm identity:
               
511
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 136
               

               
Conread position:
               
1-660
               

               
Cow position:
               
chr21:3781782-3782435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
674
               

               
Alignm identity:
               
501
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 138
               

               
Conread position:
               
1-660
               

               
Cow position:
               
chr21:5010466-5009806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
678
               

               
Alignm identity:
               
496
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 311
               

               
Conread position:
               
1-660
               

               
Cow position:
               
chr21:27125712-27125051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
678
               

               
Alignm identity:
               
504
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 292
               

               
Conread position:
               
1-664
               

               
Cow position:
               
chr21:149155-149814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
678
               

               
Alignm identity:
               
519
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 136
               

               
Conread position:
               
1-664
               

               
Cow position:
               
chr21:1195545-1196204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
680
               

               
Alignm identity:
               
534
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 307
               

               
Conread position:
               
1-664
               

               
Cow position:
               
chr21:2513854-2514514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
680
               

               
Alignm identity:
               
490
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 314
               

               
Conread position:
               
1-664
               

               
Cow position:
               
chr21:4813333-4812677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
675
               

               
Alignm identity:
               
507
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 309
               

               
Conread position:
               
1-664
               

               
Cow position:
               
chr21:5642831-5642170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
677
               

               
Alignm identity:
               
516
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 308
               

               
Conread position:
               
1-664
               

               
Cow position:
               
chr21:7048177-7047515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
683
               

               
Alignm identity:
               
507
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 311
               

               
Conread position:
               
1-664
               

               
Cow position:
               
chr21:9895372-9896024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
673
               

               
Alignm identity:
               
498
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 138
               

               
Conread position:
               
1-664
               

               
Cow position:
               
chr21:10570292-10570954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
678
               

               
Alignm identity:
               
511
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 308
               

               
Conread position:
               
1-664
               

               
Cow position:
               
chr21:10853271-10853932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
679
               

               
Alignm identity:
               
518
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 75
               

               
Conread position:
               
1-664
               

               
Cow position:
               
chr21:17143685-17144355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
687
               

               
Alignm identity:
               
516
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 262
               

               
Conread position:
               
1-664
               

               
Cow position:
               
chr21:18284812-18285472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
682
               

               
Alignm identity:
               
501
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 205
               

               
Conread position:
               
1-664
               

               
Cow position:
               
chr21:19351855-19351194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
677
               

               
Alignm identity:
               
511
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 307
               

               
Conread position:
               
1-664
               

               
Cow position:
               
chr21:22854928-22855564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
672
               

               
Alignm identity:
               
455
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 154
               

               
Conread position:
               
1-664
               

               
Cow position:
               
chr21:25189649-25190319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
684
               

               
Alignm identity:
               
503
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 305
               

               
Conread position:
               
1-664
               

               
Cow position:
               
chr21:26400759-26400102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
676
               

               
Alignm identity:
               
512
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 308
               

               
Conread position:
               
1-664
               

               
Cow position:
               
chr21:26757724-26757056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
679
               

               
Alignm identity:
               
505
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 310
               

               
Conread position:
               
1-664
               

               
Cow position:
               
chr21:27066594-27065932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
678
               

               
Alignm identity:
               
511
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 308
               

               
Conread position:
               
1-664
               

               
Cow position:
               
chr21:27608695-27608035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
676
               

               
Alignm identity:
               
516
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 308
               

               
Conread position:
               
1-664
               

               
Cow position:
               
chr21:28258678-28259328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
676
               

               
Alignm identity:
               
502
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 120
               

               
Conread position:
               
1-664
               

               
Cow position:
               
chr21:28915965-28915309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
679
               

               
Alignm identity:
               
513
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 280
               

               
Conread position:
               
1-664
               

               
Cow position:
               
chr21:30564759-30565412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
677
               

               
Alignm identity:
               
512
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 308
               

               
Conread position:
               
1-664
               

               
Cow position:
               
chr21:31513263-31512604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
677
               

               
Alignm identity:
               
516
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 195
               

               
Conread position:
               
1-664
               

               
Cow position:
               
chr21:33256561-33257223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
678
               

               
Alignm identity:
               
512
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 308
               

               
Conread position:
               
1-664
               

               
Cow position:
               
chr21:33317361-33316699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
678
               

               
Alignm identity:
               
519
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 308
               

               
Conread position:
               
1-664
               

               
Cow position:
               
chr21:36375995-36376648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
678
               

               
Alignm identity:
               
518
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 308
               

               
Conread position:
               
1-664
               

               
Cow position:
               
chr21:40268385-40267765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
675
               

               
Alignm identity:
               
494
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 71
               

               
Conread position:
               
1-664
               

               
Cow position:
               
chr21:41796715-41796058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
674
               

               
Alignm identity:
               
509
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 133
               

               
Conread position:
               
1-664
               

               
Cow position:
               
chr21:42916799-42917460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
678
               

               
Alignm identity:
               
522
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 247
               

               
Conread position:
               
1-664
               

               
Cow position:
               
chr21:47648345-47649009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
681
               

               
Alignm identity:
               
506
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 206
               

               
Conread position:
               
1-664
               

               
Cow position:
               
chr21:48274192-48273530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
678
               

               
Alignm identity:
               
511
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 308
               

               
Conread position:
               
2-416
               

               
Cow position:
               
chr21:37086144-37086544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
23, 235
               

               
Conread position:
               
2-566
               

               
Cow position:
               
chr21:3804774-3804214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 307
               

               
Conread position:
               
2-649
               

               
Cow position:
               
chr21:44709-45352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
669
               

               
Alignm identity:
               
496
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 85
               

               
Conread position:
               
2-651
               

               
Cow position:
               
chr21:2419207-2419848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
664
               

               
Alignm identity:
               
498
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 106
               

               
Conread position:
               
2-656
               

               
Cow position:
               
chr21:5020152-5020801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
669
               

               
Alignm identity:
               
511
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 307
               

               
Conread position:
               
2-656
               

               
Cow position:
               
chr21:13299844-13300473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
668
               

               
Alignm identity:
               
498
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 74
               

               
Conread position:
               
2-664
               

               
Cow position:
               
chr21:30596082-30595423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
677
               

               
Alignm identity:
               
511
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 137
               

               
Conread position:
               
3-180
               

               
Cow position:
               
chr21:13010781-13010964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
3-575
               

               
Cow position:
               
chr21:26699659-26699092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
587
               

               
Alignm identity:
               
438
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 203
               

               
Conread position:
               
3-583
               

               
Cow position:
               
chr21:13314457-13315031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
448
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 216
               

               
Conread position:
               
3-605
               

               
Cow position:
               
chr21:39428409-39429008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
615
               

               
Alignm identity:
               
465
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 306
               

               
Conread position:
               
3-630
               

               
Cow position:
               
chr21:21941542-21940931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
641
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 124
               

               
Conread position:
               
3-631
               

               
Cow position:
               
chr21:1766511-1765897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
646
               

               
Alignm identity:
               
478
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 47
               

               
Conread position:
               
3-636
               

               
Cow position:
               
chr21:13162445-13163047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
642
               

               
Alignm identity:
               
483
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 194
               

               
Conread position:
               
3-664
               

               
Cow position:
               
chr21:6966465-6965805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
676
               

               
Alignm identity:
               
517
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 306
               

               
Conread position:
               
5-637
               

               
Cow position:
               
chr21:11508950-11509579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
647
               

               
Alignm identity:
               
492
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 304
               

               
Conread position:
               
6-622
               

               
Cow position:
               
chr21:30857978-30858565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
625
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 147
               

               
Conread position:
               
6-628
               

               
Cow position:
               
chr21:4738660-4739264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
628
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 48
               

               
Conread position:
               
7-630
               

               
Cow position:
               
chr21:3046344-3046956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
642
               

               
Alignm identity:
               
464
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 90
               

               
Conread position:
               
9-600
               

               
Cow position:
               
chr21:33306996-33307568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
608
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 130
               

               
Conread position:
               
9-660
               

               
Cow position:
               
chr21:34255565-34254928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
666
               

               
Alignm identity:
               
482
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 91
               

               
Conread position:
               
10-399
               

               
Cow position:
               
chr21:45640290-45639909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
20, 38
               

               
Conread position:
               
26-664
               

               
Cow position:
               
chr21:2878804-2878172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
651
               

               
Alignm identity:
               
493
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 263
               

               
Conread position:
               
37-187
               

               
Cow position:
               
chr21:27625281-27625130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
37-299
               

               
Cow position:
               
chr21:46975038-46974783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 82
               

               
Conread position:
               
37-530
               

               
Cow position:
               
chr21:44293251-44292762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 84
               

               
Conread position:
               
37-583
               

               
Cow position:
               
chr21:21478975-21478450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
406, 127
               

               
Conread position:
               
37-601
               

               
Cow position:
               
chr21:33420930-33420374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
575
               

               
Alignm identity:
               
444
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 273
               

               
Conread position:
               
37-617
               

               
Cow position:
               
chr21:36621440-36620865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
100, 52
               

               
Conread position:
               
37-660
               

               
Cow position:
               
chr21:12152876-12153477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
641
               

               
Alignm identity:
               
483
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 28
               

               
Conread position:
               
37-664
               

               
Cow position:
               
chr21:4560022-4559406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
635
               

               
Alignm identity:
               
476
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 197
               

               
Conread position:
               
37-664
               

               
Cow position:
               
chr21:48530216-48530838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
643
               

               
Alignm identity:
               
493
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
352, 86
               

               
Conread position:
               
38-632
               

               
Cow position:
               
chr21:27343352-27342770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
604
               

               
Alignm identity:
               
468
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 227
               

               
Conread position:
               
50-664
               

               
Cow position:
               
chr21:34823236-34823843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
623
               

               
Alignm identity:
               
463
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
341, 253
               

               
Conread position:
               
51-664
               

               
Cow position:
               
chr21:33710437-33709833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
622
               

               
Alignm identity:
               
463
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
340, 7
               

               
Conread position:
               
62-664
               

               
Cow position:
               
chr21:27287054-27287640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
611
               

               
Alignm identity:
               
470
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
329, 200
               

               
Conread position:
               
71-586
               

               
Cow position:
               
chr21:27429034-27428534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 41
               

               
Conread position:
               
71-656
               

               
Cow position:
               
chr21:36535127-36534549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
594
               

               
Alignm identity:
               
460
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
320, 228
               

               
Conread position:
               
74-663
               

               
Cow position:
               
chr21:3252701-3253299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
618
               

               
Alignm identity:
               
439
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 36
               

               
Conread position:
               
80-426
               

               
Cow position:
               
chr21:10042455-10042789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
309, 73
               

               
Conread position:
               
80-618
               

               
Cow position:
               
chr21:32203331-32203847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 221
               

               
Conread position:
               
80-662
               

               
Cow position:
               
chr21:30650080-30649513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
311, 73
               

               
Conread position:
               
81-584
               

               
Cow position:
               
chr21:27685279-27685780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
134, 128
               

               
Conread position:
               
81-649
               

               
Cow position:
               
chr21:18792351-18791785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
583
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
310, 55
               

               
Conread position:
               
84-664
               

               
Cow position:
               
chr21:32396926-32396364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
589
               

               
Alignm identity:
               
440
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
307, 206
               

               
Conread position:
               
88-651
               

               
Cow position:
               
chr21:25156387-25156938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
580
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 163
               

               
Conread position:
               
93-637
               

               
Cow position:
               
chr21:37923290-37923814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
551
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
296, 210
               

               
Conread position:
               
99-648
               

               
Cow position:
               
chr21:5595919-5596441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
559
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 104
               

               
Conread position:
               
101-637
               

               
Cow position:
               
chr21:22719984-22719463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
288, 136
               

               
Conread position:
               
105-664
               

               
Cow position:
               
chr21:33728228-33728774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
286, 56
               

               
Conread position:
               
111-656
               

               
Cow position:
               
chr21:16890721-16890181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
560
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
278, 192
               

               
Conread position:
               
117-569
               

               
Cow position:
               
chr21:2665035-2664595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
272, 135
               

               
Conread position:
               
121-664
               

               
Cow position:
               
chr21:30297609-30298146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
246, 182
               

               
Conread position:
               
123-660
               

               
Cow position:
               
chr21:47428476-47429006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
268, 180
               

               
Conread position:
               
129-487
               

               
Cow position:
               
chr21:449308-449654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
262, 75
               

               
Conread position:
               
142-556
               

               
Cow position:
               
chr21:25472351-25472753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
249, 161
               

               
Conread position:
               
148-637
               

               
Cow position:
               
chr21:14533771-14534251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 155
               

               
Conread position:
               
151-434
               

               
Cow position:
               
chr21:28476645-28476374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
239, 78
               

               
Conread position:
               
153-660
               

               
Cow position:
               
chr21:4097741-4098235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
238, 17
               

               
Conread position:
               
153-664
               

               
Cow position:
               
chr21:32237502-32238006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
238, 150
               

               
Conread position:
               
163-628
               

               
Cow position:
               
chr21:48261991-48262444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
225, 44
               

               
Conread position:
               
163-664
               

               
Cow position:
               
chr21:31275520-31276009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
239, 140
               

               
Conread position:
               
173-664
               

               
Cow position:
               
chr21:49656000-49655516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 130
               

               
Conread position:
               
176-635
               

               
Cow position:
               
chr21:39417263-39417711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 127
               

               
Conread position:
               
179-623
               

               
Cow position:
               
chr21:18847147-18846712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 125
               

               
Conread position:
               
179-648
               

               
Cow position:
               
chr21:18851522-18851065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 126
               

               
Conread position:
               
179-656
               

               
Cow position:
               
chr21:18837458-18836996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 81
               

               
Conread position:
               
182-664
               

               
Cow position:
               
chr21:43404245-43403771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 121
               

               
Conread position:
               
184-664
               

               
Cow position:
               
chr21:47977461-47977934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 119
               

               
Conread position:
               
185-664
               

               
Cow position:
               
chr21:4188736-4189209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 34
               

               
Conread position:
               
185-664
               

               
Cow position:
               
chr21:34900479-34900007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 118
               

               
Conread position:
               
193-619
               

               
Cow position:
               
chr21:42460849-42460442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
198, 43
               

               
Conread position:
               
193-656
               

               
Cow position:
               
chr21:44218878-44219340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
198, 93
               

               
Conread position:
               
194-565
               

               
Cow position:
               
chr21:19098654-19099013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 109
               

               
Conread position:
               
196-664
               

               
Cow position:
               
chr21:15546476-15546024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 107
               

               
Conread position:
               
197-634
               

               
Cow position:
               
chr21:31974342-31974769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
42, 101
               

               
Conread position:
               
202-630
               

               
Cow position:
               
chr21:38450772-38450364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 102
               

               
Conread position:
               
204-649
               

               
Cow position:
               
chr21:2905575-2905143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
278, 99
               

               
Conread position:
               
205-664
               

               
Cow position:
               
chr21:25597888-25598331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 98
               

               
Conread position:
               
205-664
               

               
Cow position:
               
chr21:36506623-36506172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 98
               

               
Conread position:
               
212-656
               

               
Cow position:
               
chr21:45782501-45782071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 16
               

               
Conread position:
               
213-637
               

               
Cow position:
               
chr21:28597814-28598228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 91
               

               
Conread position:
               
216-637
               

               
Cow position:
               
chr21:38866386-38865974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 87
               

               
Conread position:
               
224-664
               

               
Cow position:
               
chr21:26874827-26875258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 22
               

               
Conread position:
               
227-637
               

               
Cow position:
               
chr21:3766530-3766132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 57
               

               
Conread position:
               
229-637
               

               
Cow position:
               
chr21:25290920-25291310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
167, 68
               

               
Conread position:
               
237-664
               

               
Cow position:
               
chr21:13302443-13302862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 50
               

               
Conread position:
               
243-664
               

               
Cow position:
               
chr21:19627454-19627043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 60
               

               
Conread position:
               
243-664
               

               
Cow position:
               
chr21:33965466-33965064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 60
               

               
Conread position:
               
246-664
               

               
Cow position:
               
chr21:13735903-13735495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 57
               

               
Conread position:
               
246-664
               

               
Cow position:
               
chr21:23340907-23341318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 57
               

               
Conread position:
               
248-459
               

               
Cow position:
               
chr21:4283296-4283097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
141, 55
               

               
Conread position:
               
250-637
               

               
Cow position:
               
chr21:25986677-25987052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 54
               

               
Conread position:
               
251-487
               

               
Cow position:
               
chr21:37123155-37122929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
138, 53
               

               
Conread position:
               
254-616
               

               
Cow position:
               
chr21:27375369-27375723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 49
               

               
Conread position:
               
265-664
               

               
Cow position:
               
chr21:20244325-20243933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 39
               

               
Conread position:
               
287-656
               

               
Cow position:
               
chr21:17415552-17415184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 120
               

               
Conread position:
               
287-656
               

               
Cow position:
               
chr21:18931464-18931833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 22
               

               
Conread position:
               
287-662
               

               
Cow position:
               
chr21:22315817-22316189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 16
               

               
Conread position:
               
299-637
               

               
Cow position:
               
chr21:46974439-46974096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 146
               

               
Conread position:
               
300-623
               

               
Cow position:
               
chr21:4079327-4079642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
16, 33
               

               
Conread position:
               
303-662
               

               
Cow position:
               
chr21:23501372-23501010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
88, 14
               

               
Conread position:
               
310-598
               

               
Cow position:
               
chr21:2537851-2537560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
40, 141
               

               
Conread position:
               
310-660
               

               
Cow position:
               
chr21:28880979-28881331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 97
               

               
Conread position:
               
310-664
               

               
Cow position:
               
chr21:29423370-29423725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 106
               

               
Conread position:
               
311-648
               

               
Cow position:
               
chr21:21131367-21131026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
81, 9
               

               
Conread position:
               
319-482
               

               
Cow position:
               
chr21:19973419-19973581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
72, 120
               

               
Conread position:
               
319-487
               

               
Cow position:
               
chr21:28026294-28026462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
72, 20
               

               
Conread position:
               
319-521
               

               
Cow position:
               
chr21:15398449-15398653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
72, 120
               

               
Conread position:
               
319-622
               

               
Cow position:
               
chr21:42391194-42390895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
70, 19
               

               
Conread position:
               
319-623
               

               
Cow position:
               
chr21:20911109-20910807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
72, 119
               

               
Conread position:
               
319-631
               

               
Cow position:
               
chr21:33832663-33832344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 107
               

               
Conread position:
               
319-638
               

               
Cow position:
               
chr21:19969550-19969873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 121
               

               
Conread position:
               
319-644
               

               
Cow position:
               
chr21:18933929-18934253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
71, 83
               

               
Conread position:
               
319-648
               

               
Cow position:
               
chr21:17413290-17412960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
72, 83
               

               
Conread position:
               
319-649
               

               
Cow position:
               
chr21:4862148-4861830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
125, 92
               

               
Conread position:
               
319-651
               

               
Cow position:
               
chr21:24697489-24697811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
37, 98
               

               
Conread position:
               
319-660
               

               
Cow position:
               
chr21:13707701-13707369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
72, 21
               

               
Conread position:
               
319-660
               

               
Cow position:
               
chr21:39060003-39059667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 129
               

               
Conread position:
               
319-664
               

               
Cow position:
               
chr21:8071781-8071430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 97
               

               
Conread position:
               
319-664
               

               
Cow position:
               
chr21:32773251-32773602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 120
               

               
Conread position:
               
321-637
               

               
Cow position:
               
chr21:16277723-16278039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 18
               

               
Conread position:
               
323-588
               

               
Cow position:
               
chr21:17480629-17480883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
68, 79
               

               
Conread position:
               
324-658
               

               
Cow position:
               
chr21:34684370-34684691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 114
               

               
Conread position:
               
326-486
               

               
Cow position:
               
chr21:48638948-48638786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
63, 109
               

               
Conread position:
               
326-521
               

               
Cow position:
               
chr21:8419380-8419573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
65, 104
               

               
Conread position:
               
326-562
               

               
Cow position:
               
chr21:8617875-8617645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
160, 58
               

               
Conread position:
               
326-637
               

               
Cow position:
               
chr21:6765702-6765385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 125
               

               
Conread position:
               
326-649
               

               
Cow position:
               
chr21:81070-81388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
65, 85
               

               
Conread position:
               
326-649
               

               
Cow position:
               
chr21:34657318-34657642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 14
               

               
Conread position:
               
326-664
               

               
Cow position:
               
chr21:2293859-2293515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 124
               

               
Conread position:
               
326-664
               

               
Cow position:
               
chr21:9863606-9863281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
220, 13
               

               
Conread position:
               
326-664
               

               
Cow position:
               
chr21:13704687-13704340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 116
               

               
Conread position:
               
328-637
               

               
Cow position:
               
chr21:17474044-17474354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
63, 10
               

               
Conread position:
               
328-664
               

               
Cow position:
               
chr21:46831240-46830898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 5
               

               
Conread position:
               
329-637
               

               
Cow position:
               
chr21:12802773-12802472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
153, 50
               

               
Conread position:
               
330-664
               

               
Cow position:
               
chr21:4719493-4719153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 109
               

               
Conread position:
               
332-637
               

               
Cow position:
               
chr21:11144521-11144212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 107
               

               
Conread position:
               
332-637
               

               
Cow position:
               
chr21:29499867-29500176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 117
               

               
Conread position:
               
333-630
               

               
Cow position:
               
chr21:12571157-12571449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
38, 99
               

               
Conread position:
               
341-660
               

               
Cow position:
               
chr21:13286504-13286827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
94, 66
               

               
Conread position:
               
342-641
               

               
Cow position:
               
chr21:30627740-30627441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 106
               

               
Conread position:
               
345-631
               

               
Cow position:
               
chr21:39400577-39400867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
27, 104
               

               
Conread position:
               
349-664
               

               
Cow position:
               
chr21:28476648-28476960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 91
               

               
Conread position:
               
349-664
               

               
Cow position:
               
chr21:36163943-36163619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 165
               

               
Conread position:
               
362-631
               

               
Cow position:
               
chr21:4567311-4567579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
18, 13
               

               
Conread position:
               
363-630
               

               
Cow position:
               
chr21:1057826-1058093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 9
               

               
Conread position:
               
367-637
               

               
Cow position:
               
chr21:18819270-18818995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
68, 82
               

               
Conread position:
               
368-656
               

               
Cow position:
               
chr21:9010743-9010450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 142
               

               
Conread position:
               
369-637
               

               
Cow position:
               
chr21:2503109-2503380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
5, 13
               

               
Conread position:
               
388-604
               

               
Cow position:
               
chr21:1284559-1284342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
104, 50
               

               
Conread position:
               
388-664
               

               
Cow position:
               
chr21:18787122-18786848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 60
               

               
Conread position:
               
390-664
               

               
Cow position:
               
chr21:36892843-36892565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 57
               

               
Conread position:
               
401-660
               

               
Cow position:
               
chr21:24297663-24297413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
403-649
               

               
Cow position:
               
chr21:16768711-16768473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
137, 45
               

               
Conread position:
               
406-638
               

               
Cow position:
               
chr21:13090375-13090151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
179, 6
               

               
Conread position:
               
406-662
               

               
Cow position:
               
chr21:2928469-2928209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 32
               

               
Conread position:
               
441-660
               

               
Cow position:
               
chr21:23585531-23585755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
48, 74
               

               
Conread position:
               
447-664
               

               
Cow position:
               
chr21:42558219-42558441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
42, 68
               

               
Conread position:
               
451-652
               

               
Cow position:
               
chr21:4035830-4035628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
31, 59
               

               
Conread position:
               
452-637
               

               
Cow position:
               
chr21:17207628-17207816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
40, 63
               

               
Conread position:
               
454-664
               

               
Cow position:
               
chr21:28210321-28210531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
182, 14
               

               
Conread position:
               
455-640
               

               
Cow position:
               
chr21:26830110-26829922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
458-637
               

               
Cow position:
               
chr21:28028090-28028266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
458-664
               

               
Cow position:
               
chr21:39700971-39700766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
181, 27
               

               
Conread position:
               
470-628
               

               
Cow position:
               
chr21:20263208-20263047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
19, 45
               

               
Conread position:
               
485-625
               

               
Cow position:
               
chr21:13762717-13762857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
48, 62
               

               
Conread position:
               
485-638
               

               
Cow position:
               
chr21:19973913-19974065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
63, 26
               

               
Conread position:
               
507-637
               

               
Cow position:
               
chr21:10239880-10239750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
515-664
               

               
Cow position:
               
chr21:48108667-48108512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
112, 0
               
Show alignments to all cow chromosomes.