Cow genome map
| Conread name: | Pig4-TMW8006O17 | 
| Conread position: | 1-176 | 
| Cow position: | chr6:24624595-24624411 (view UCSC Genome Browser custom track) | 
| Alignm length: | 185 | 
| Alignm identity: | 136 | 
| Alignm E-value: | 7e-26 | 
| Alignm gaps (pig, cow): | 24, 0 | 
| Conread position: | 1-186 | 
| Cow position: | chr6:39435115-39434935 (view UCSC Genome Browser custom track) | 
| Alignm length: | 192 | 
| Alignm identity: | 149 | 
| Alignm E-value: | 1e-31 | 
| Alignm gaps (pig, cow): | 24, 148 | 
| Conread position: | 1-301 | 
| Cow position: | chr6:6159459-6159763 (view UCSC Genome Browser custom track) | 
| Alignm length: | 307 | 
| Alignm identity: | 225 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 165 | 
| Conread position: | 1-318 | 
| Cow position: | chr6:31010007-31009685 (view UCSC Genome Browser custom track) | 
| Alignm length: | 324 | 
| Alignm identity: | 228 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 302 | 
| Conread position: | 1-426 | 
| Cow position: | chr6:48771-48351 (view UCSC Genome Browser custom track) | 
| Alignm length: | 434 | 
| Alignm identity: | 335 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 48, 308 | 
| Conread position: | 1-426 | 
| Cow position: | chr6:43790777-43790355 (view UCSC Genome Browser custom track) | 
| Alignm length: | 434 | 
| Alignm identity: | 325 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 300 | 
| Conread position: | 1-435 | 
| Cow position: | chr6:49826451-49826022 (view UCSC Genome Browser custom track) | 
| Alignm length: | 443 | 
| Alignm identity: | 337 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 33, 308 | 
| Conread position: | 1-458 | 
| Cow position: | chr6:48875530-48875088 (view UCSC Genome Browser custom track) | 
| Alignm length: | 466 | 
| Alignm identity: | 337 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 171 | 
| Conread position: | 1-487 | 
| Cow position: | chr6:365692-366171 (view UCSC Genome Browser custom track) | 
| Alignm length: | 500 | 
| Alignm identity: | 375 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 125 | 
| Conread position: | 1-487 | 
| Cow position: | chr6:28488767-28488297 (view UCSC Genome Browser custom track) | 
| Alignm length: | 495 | 
| Alignm identity: | 371 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 190 | 
| Conread position: | 1-487 | 
| Cow position: | chr6:38873857-38873380 (view UCSC Genome Browser custom track) | 
| Alignm length: | 495 | 
| Alignm identity: | 375 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 106 | 
| Conread position: | 1-506 | 
| Cow position: | chr6:20351288-20350785 (view UCSC Genome Browser custom track) | 
| Alignm length: | 518 | 
| Alignm identity: | 390 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 308 | 
| Conread position: | 1-509 | 
| Cow position: | chr6:45724344-45723840 (view UCSC Genome Browser custom track) | 
| Alignm length: | 520 | 
| Alignm identity: | 392 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 308 | 
| Conread position: | 1-513 | 
| Cow position: | chr6:41408207-41408715 (view UCSC Genome Browser custom track) | 
| Alignm length: | 524 | 
| Alignm identity: | 389 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 307 | 
| Conread position: | 1-532 | 
| Cow position: | chr6:33490253-33489725 (view UCSC Genome Browser custom track) | 
| Alignm length: | 544 | 
| Alignm identity: | 409 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 308 | 
| Conread position: | 1-556 | 
| Cow position: | chr6:1507709-1507157 (view UCSC Genome Browser custom track) | 
| Alignm length: | 568 | 
| Alignm identity: | 425 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 308 | 
| Conread position: | 1-556 | 
| Cow position: | chr6:66188999-66188447 (view UCSC Genome Browser custom track) | 
| Alignm length: | 568 | 
| Alignm identity: | 427 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 308 | 
| Conread position: | 1-561 | 
| Cow position: | chr6:11168308-11168864 (view UCSC Genome Browser custom track) | 
| Alignm length: | 576 | 
| Alignm identity: | 431 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 76 | 
| Conread position: | 1-569 | 
| Cow position: | chr6:27151639-27151075 (view UCSC Genome Browser custom track) | 
| Alignm length: | 581 | 
| Alignm identity: | 436 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 95 | 
| Conread position: | 1-574 | 
| Cow position: | chr6:11354362-11353802 (view UCSC Genome Browser custom track) | 
| Alignm length: | 592 | 
| Alignm identity: | 440 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 22, 138 | 
| Conread position: | 1-584 | 
| Cow position: | chr6:7940985-7940406 (view UCSC Genome Browser custom track) | 
| Alignm length: | 599 | 
| Alignm identity: | 384 | 
| Alignm E-value: | 5.60519e-45 | 
| Alignm gaps (pig, cow): | 24, 83 | 
| Conread position: | 1-592 | 
| Cow position: | chr6:30270102-30269513 (view UCSC Genome Browser custom track) | 
| Alignm length: | 604 | 
| Alignm identity: | 470 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 308 | 
| Conread position: | 1-592 | 
| Cow position: | chr6:51867796-51868376 (view UCSC Genome Browser custom track) | 
| Alignm length: | 605 | 
| Alignm identity: | 463 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 308 | 
| Conread position: | 1-608 | 
| Cow position: | chr6:14851945-14851345 (view UCSC Genome Browser custom track) | 
| Alignm length: | 619 | 
| Alignm identity: | 467 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 138 | 
| Conread position: | 1-622 | 
| Cow position: | chr6:41192124-41192744 (view UCSC Genome Browser custom track) | 
| Alignm length: | 638 | 
| Alignm identity: | 431 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 311 | 
| Conread position: | 1-628 | 
| Cow position: | chr6:65049853-65049261 (view UCSC Genome Browser custom track) | 
| Alignm length: | 629 | 
| Alignm identity: | 448 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 68, 216 | 
| Conread position: | 1-629 | 
| Cow position: | chr6:33950348-33949734 (view UCSC Genome Browser custom track) | 
| Alignm length: | 638 | 
| Alignm identity: | 457 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 19, 159 | 
| Conread position: | 1-629 | 
| Cow position: | chr6:36230725-36230100 (view UCSC Genome Browser custom track) | 
| Alignm length: | 641 | 
| Alignm identity: | 485 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 308 | 
| Conread position: | 1-631 | 
| Cow position: | chr6:2367431-2366838 (view UCSC Genome Browser custom track) | 
| Alignm length: | 639 | 
| Alignm identity: | 447 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 45, 19 | 
| Conread position: | 1-631 | 
| Cow position: | chr6:43798111-43797470 (view UCSC Genome Browser custom track) | 
| Alignm length: | 651 | 
| Alignm identity: | 494 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 26, 313 | 
| Conread position: | 1-637 | 
| Cow position: | chr6:6720783-6721406 (view UCSC Genome Browser custom track) | 
| Alignm length: | 656 | 
| Alignm identity: | 437 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 123 | 
| Conread position: | 1-637 | 
| Cow position: | chr6:10236002-10236626 (view UCSC Genome Browser custom track) | 
| Alignm length: | 647 | 
| Alignm identity: | 468 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 129 | 
| Conread position: | 1-637 | 
| Cow position: | chr6:12663514-12662888 (view UCSC Genome Browser custom track) | 
| Alignm length: | 649 | 
| Alignm identity: | 490 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 308 | 
| Conread position: | 1-637 | 
| Cow position: | chr6:15276438-15275806 (view UCSC Genome Browser custom track) | 
| Alignm length: | 651 | 
| Alignm identity: | 502 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 30, 195 | 
| Conread position: | 1-637 | 
| Cow position: | chr6:19713433-19712811 (view UCSC Genome Browser custom track) | 
| Alignm length: | 647 | 
| Alignm identity: | 494 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 308 | 
| Conread position: | 1-637 | 
| Cow position: | chr6:28185529-28184886 (view UCSC Genome Browser custom track) | 
| Alignm length: | 649 | 
| Alignm identity: | 494 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 22, 307 | 
| Conread position: | 1-637 | 
| Cow position: | chr6:33465764-33466391 (view UCSC Genome Browser custom track) | 
| Alignm length: | 646 | 
| Alignm identity: | 480 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 208 | 
| Conread position: | 1-637 | 
| Cow position: | chr6:43620532-43621165 (view UCSC Genome Browser custom track) | 
| Alignm length: | 649 | 
| Alignm identity: | 497 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 308 | 
| Conread position: | 1-637 | 
| Cow position: | chr6:53543677-53543049 (view UCSC Genome Browser custom track) | 
| Alignm length: | 649 | 
| Alignm identity: | 490 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 106 | 
| Conread position: | 1-637 | 
| Cow position: | chr6:60378964-60379597 (view UCSC Genome Browser custom track) | 
| Alignm length: | 649 | 
| Alignm identity: | 493 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 308 | 
| Conread position: | 1-637 | 
| Cow position: | chr6:61829030-61829663 (view UCSC Genome Browser custom track) | 
| Alignm length: | 649 | 
| Alignm identity: | 487 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 308 | 
| Conread position: | 1-638 | 
| Cow position: | chr6:9734162-9733556 (view UCSC Genome Browser custom track) | 
| Alignm length: | 647 | 
| Alignm identity: | 463 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 146 | 
| Conread position: | 1-640 | 
| Cow position: | chr6:6120178-6119558 (view UCSC Genome Browser custom track) | 
| Alignm length: | 650 | 
| Alignm identity: | 490 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 145 | 
| Conread position: | 1-640 | 
| Cow position: | chr6:59596063-59596682 (view UCSC Genome Browser custom track) | 
| Alignm length: | 656 | 
| Alignm identity: | 483 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 134 | 
| Conread position: | 1-649 | 
| Cow position: | chr6:12351629-12352282 (view UCSC Genome Browser custom track) | 
| Alignm length: | 666 | 
| Alignm identity: | 494 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 336 | 
| Conread position: | 1-649 | 
| Cow position: | chr6:16767035-16766394 (view UCSC Genome Browser custom track) | 
| Alignm length: | 663 | 
| Alignm identity: | 513 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 76 | 
| Conread position: | 1-649 | 
| Cow position: | chr6:34074664-34075320 (view UCSC Genome Browser custom track) | 
| Alignm length: | 675 | 
| Alignm identity: | 502 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 111 | 
| Conread position: | 1-650 | 
| Cow position: | chr6:28171705-28172352 (view UCSC Genome Browser custom track) | 
| Alignm length: | 672 | 
| Alignm identity: | 492 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 19, 315 | 
| Conread position: | 1-651 | 
| Cow position: | chr6:9840329-9839686 (view UCSC Genome Browser custom track) | 
| Alignm length: | 666 | 
| Alignm identity: | 473 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 23, 309 | 
| Conread position: | 1-651 | 
| Cow position: | chr6:40864231-40863582 (view UCSC Genome Browser custom track) | 
| Alignm length: | 668 | 
| Alignm identity: | 493 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 311 | 
| Conread position: | 1-652 | 
| Cow position: | chr6:50637091-50637716 (view UCSC Genome Browser custom track) | 
| Alignm length: | 660 | 
| Alignm identity: | 484 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 107 | 
| Conread position: | 1-654 | 
| Cow position: | chr6:53935831-53935186 (view UCSC Genome Browser custom track) | 
| Alignm length: | 665 | 
| Alignm identity: | 496 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 277 | 
| Conread position: | 1-656 | 
| Cow position: | chr6:478352-479005 (view UCSC Genome Browser custom track) | 
| Alignm length: | 670 | 
| Alignm identity: | 509 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 75 | 
| Conread position: | 1-656 | 
| Cow position: | chr6:916844-917513 (view UCSC Genome Browser custom track) | 
| Alignm length: | 685 | 
| Alignm identity: | 519 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 308 | 
| Conread position: | 1-656 | 
| Cow position: | chr6:9738456-9737801 (view UCSC Genome Browser custom track) | 
| Alignm length: | 676 | 
| Alignm identity: | 517 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 305 | 
| Conread position: | 1-656 | 
| Cow position: | chr6:40974987-40975623 (view UCSC Genome Browser custom track) | 
| Alignm length: | 668 | 
| Alignm identity: | 502 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 30, 308 | 
| Conread position: | 1-656 | 
| Cow position: | chr6:41231288-41231942 (view UCSC Genome Browser custom track) | 
| Alignm length: | 673 | 
| Alignm identity: | 502 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 22, 309 | 
| Conread position: | 1-656 | 
| Cow position: | chr6:42266540-42267176 (view UCSC Genome Browser custom track) | 
| Alignm length: | 664 | 
| Alignm identity: | 483 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 310 | 
| Conread position: | 1-656 | 
| Cow position: | chr6:65875480-65874829 (view UCSC Genome Browser custom track) | 
| Alignm length: | 671 | 
| Alignm identity: | 485 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 50 | 
| Conread position: | 1-658 | 
| Cow position: | chr6:64719122-64719773 (view UCSC Genome Browser custom track) | 
| Alignm length: | 669 | 
| Alignm identity: | 510 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 305 | 
| Conread position: | 1-659 | 
| Cow position: | chr6:41676736-41677387 (view UCSC Genome Browser custom track) | 
| Alignm length: | 672 | 
| Alignm identity: | 465 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 22, 112 | 
| Conread position: | 1-660 | 
| Cow position: | chr6:11870130-11869477 (view UCSC Genome Browser custom track) | 
| Alignm length: | 674 | 
| Alignm identity: | 503 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 85 | 
| Conread position: | 1-660 | 
| Cow position: | chr6:14928260-14928910 (view UCSC Genome Browser custom track) | 
| Alignm length: | 670 | 
| Alignm identity: | 506 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 308 | 
| Conread position: | 1-660 | 
| Cow position: | chr6:51149743-51150401 (view UCSC Genome Browser custom track) | 
| Alignm length: | 676 | 
| Alignm identity: | 508 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 30, 308 | 
| Conread position: | 1-661 | 
| Cow position: | chr6:59618870-59619536 (view UCSC Genome Browser custom track) | 
| Alignm length: | 682 | 
| Alignm identity: | 503 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 300 | 
| Conread position: | 1-662 | 
| Cow position: | chr6:34843911-34843255 (view UCSC Genome Browser custom track) | 
| Alignm length: | 675 | 
| Alignm identity: | 519 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 48, 307 | 
| Conread position: | 1-663 | 
| Cow position: | chr6:3272679-3272020 (view UCSC Genome Browser custom track) | 
| Alignm length: | 676 | 
| Alignm identity: | 516 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 203 | 
| Conread position: | 1-663 | 
| Cow position: | chr6:36531085-36531736 (view UCSC Genome Browser custom track) | 
| Alignm length: | 675 | 
| Alignm identity: | 513 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 183 | 
| Conread position: | 1-664 | 
| Cow position: | chr6:127331-126672 (view UCSC Genome Browser custom track) | 
| Alignm length: | 675 | 
| Alignm identity: | 502 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 33, 308 | 
| Conread position: | 1-664 | 
| Cow position: | chr6:328559-327900 (view UCSC Genome Browser custom track) | 
| Alignm length: | 679 | 
| Alignm identity: | 504 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 242 | 
| Conread position: | 1-664 | 
| Cow position: | chr6:888358-889020 (view UCSC Genome Browser custom track) | 
| Alignm length: | 678 | 
| Alignm identity: | 508 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 33, 308 | 
| Conread position: | 1-664 | 
| Cow position: | chr6:2876230-2875571 (view UCSC Genome Browser custom track) | 
| Alignm length: | 676 | 
| Alignm identity: | 506 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 308 | 
| Conread position: | 1-664 | 
| Cow position: | chr6:3152019-3152678 (view UCSC Genome Browser custom track) | 
| Alignm length: | 675 | 
| Alignm identity: | 503 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 308 | 
| Conread position: | 1-664 | 
| Cow position: | chr6:3886705-3886042 (view UCSC Genome Browser custom track) | 
| Alignm length: | 680 | 
| Alignm identity: | 503 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 310 | 
| Conread position: | 1-664 | 
| Cow position: | chr6:5946974-5946312 (view UCSC Genome Browser custom track) | 
| Alignm length: | 679 | 
| Alignm identity: | 517 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 76 | 
| Conread position: | 1-664 | 
| Cow position: | chr6:7138539-7137879 (view UCSC Genome Browser custom track) | 
| Alignm length: | 678 | 
| Alignm identity: | 511 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 308 | 
| Conread position: | 1-664 | 
| Cow position: | chr6:7467850-7467188 (view UCSC Genome Browser custom track) | 
| Alignm length: | 679 | 
| Alignm identity: | 520 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 18, 309 | 
| Conread position: | 1-664 | 
| Cow position: | chr6:10044016-10044669 (view UCSC Genome Browser custom track) | 
| Alignm length: | 678 | 
| Alignm identity: | 501 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 308 | 
| Conread position: | 1-664 | 
| Cow position: | chr6:11019458-11020121 (view UCSC Genome Browser custom track) | 
| Alignm length: | 681 | 
| Alignm identity: | 518 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 308 | 
| Conread position: | 1-664 | 
| Cow position: | chr6:11289655-11289004 (view UCSC Genome Browser custom track) | 
| Alignm length: | 678 | 
| Alignm identity: | 493 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 211 | 
| Conread position: | 1-664 | 
| Cow position: | chr6:11722394-11721745 (view UCSC Genome Browser custom track) | 
| Alignm length: | 678 | 
| Alignm identity: | 507 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 125 | 
| Conread position: | 1-664 | 
| Cow position: | chr6:16050489-16049830 (view UCSC Genome Browser custom track) | 
| Alignm length: | 677 | 
| Alignm identity: | 507 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 233 | 
| Conread position: | 1-664 | 
| Cow position: | chr6:16592769-16593411 (view UCSC Genome Browser custom track) | 
| Alignm length: | 673 | 
| Alignm identity: | 506 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 159 | 
| Conread position: | 1-664 | 
| Cow position: | chr6:17049172-17049836 (view UCSC Genome Browser custom track) | 
| Alignm length: | 681 | 
| Alignm identity: | 506 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 133 | 
| Conread position: | 1-664 | 
| Cow position: | chr6:17121189-17121852 (view UCSC Genome Browser custom track) | 
| Alignm length: | 682 | 
| Alignm identity: | 499 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 206 | 
| Conread position: | 1-664 | 
| Cow position: | chr6:19104107-19103445 (view UCSC Genome Browser custom track) | 
| Alignm length: | 678 | 
| Alignm identity: | 516 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 308 | 
| Conread position: | 1-664 | 
| Cow position: | chr6:20450769-20451422 (view UCSC Genome Browser custom track) | 
| Alignm length: | 678 | 
| Alignm identity: | 512 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 94 | 
| Conread position: | 1-664 | 
| Cow position: | chr6:20553440-20552780 (view UCSC Genome Browser custom track) | 
| Alignm length: | 683 | 
| Alignm identity: | 504 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 211 | 
| Conread position: | 1-664 | 
| Cow position: | chr6:21832857-21832197 (view UCSC Genome Browser custom track) | 
| Alignm length: | 679 | 
| Alignm identity: | 490 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 19, 90 | 
| Conread position: | 1-664 | 
| Cow position: | chr6:22737906-22737243 (view UCSC Genome Browser custom track) | 
| Alignm length: | 679 | 
| Alignm identity: | 512 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 309 | 
| Conread position: | 1-664 | 
| Cow position: | chr6:25375293-25374645 (view UCSC Genome Browser custom track) | 
| Alignm length: | 678 | 
| Alignm identity: | 496 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 248 | 
| Conread position: | 1-664 | 
| Cow position: | chr6:25790895-25790254 (view UCSC Genome Browser custom track) | 
| Alignm length: | 675 | 
| Alignm identity: | 504 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 30, 305 | 
| Conread position: | 1-664 | 
| Cow position: | chr6:26325398-26324737 (view UCSC Genome Browser custom track) | 
| Alignm length: | 678 | 
| Alignm identity: | 499 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 308 | 
| Conread position: | 1-664 | 
| Cow position: | chr6:27172631-27173304 (view UCSC Genome Browser custom track) | 
| Alignm length: | 691 | 
| Alignm identity: | 510 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 30, 259 | 
| Conread position: | 1-664 | 
| Cow position: | chr6:28064792-28065453 (view UCSC Genome Browser custom track) | 
| Alignm length: | 678 | 
| Alignm identity: | 508 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 23, 308 | 
| Conread position: | 1-664 | 
| Cow position: | chr6:31913374-31912712 (view UCSC Genome Browser custom track) | 
| Alignm length: | 678 | 
| Alignm identity: | 511 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 308 | 
| Conread position: | 1-664 | 
| Cow position: | chr6:34493478-34494135 (view UCSC Genome Browser custom track) | 
| Alignm length: | 675 | 
| Alignm identity: | 507 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 48, 31 | 
| Conread position: | 1-664 | 
| Cow position: | chr6:34504721-34504061 (view UCSC Genome Browser custom track) | 
| Alignm length: | 677 | 
| Alignm identity: | 515 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 19, 309 | 
| Conread position: | 1-664 | 
| Cow position: | chr6:35873910-35873269 (view UCSC Genome Browser custom track) | 
| Alignm length: | 679 | 
| Alignm identity: | 505 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 82 | 
| Conread position: | 1-664 | 
| Cow position: | chr6:37387382-37388029 (view UCSC Genome Browser custom track) | 
| Alignm length: | 676 | 
| Alignm identity: | 512 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 75 | 
| Conread position: | 1-664 | 
| Cow position: | chr6:39912126-39912785 (view UCSC Genome Browser custom track) | 
| Alignm length: | 678 | 
| Alignm identity: | 518 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 281 | 
| Conread position: | 1-664 | 
| Cow position: | chr6:39999655-39998996 (view UCSC Genome Browser custom track) | 
| Alignm length: | 677 | 
| Alignm identity: | 508 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 48, 307 | 
| Conread position: | 1-664 | 
| Cow position: | chr6:51717347-51718020 (view UCSC Genome Browser custom track) | 
| Alignm length: | 691 | 
| Alignm identity: | 521 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 50 | 
| Conread position: | 1-664 | 
| Cow position: | chr6:51732883-51733544 (view UCSC Genome Browser custom track) | 
| Alignm length: | 678 | 
| Alignm identity: | 507 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 308 | 
| Conread position: | 1-664 | 
| Cow position: | chr6:55539468-55538808 (view UCSC Genome Browser custom track) | 
| Alignm length: | 677 | 
| Alignm identity: | 510 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 48, 205 | 
| Conread position: | 1-664 | 
| Cow position: | chr6:56452294-56451632 (view UCSC Genome Browser custom track) | 
| Alignm length: | 678 | 
| Alignm identity: | 512 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 308 | 
| Conread position: | 1-664 | 
| Cow position: | chr6:60876100-60876759 (view UCSC Genome Browser custom track) | 
| Alignm length: | 682 | 
| Alignm identity: | 512 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 311 | 
| Conread position: | 1-664 | 
| Cow position: | chr6:62664576-62665238 (view UCSC Genome Browser custom track) | 
| Alignm length: | 678 | 
| Alignm identity: | 510 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 22, 308 | 
| Conread position: | 2-407 | 
| Cow position: | chr6:30806068-30805664 (view UCSC Genome Browser custom track) | 
| Alignm length: | 412 | 
| Alignm identity: | 264 | 
| Alignm E-value: | 6e-35 | 
| Alignm gaps (pig, cow): | 25, 230 | 
| Conread position: | 2-421 | 
| Cow position: | chr6:1888635-1888232 (view UCSC Genome Browser custom track) | 
| Alignm length: | 426 | 
| Alignm identity: | 324 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 23, 189 | 
| Conread position: | 2-426 | 
| Cow position: | chr6:41414540-41414124 (view UCSC Genome Browser custom track) | 
| Alignm length: | 434 | 
| Alignm identity: | 302 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 146 | 
| Conread position: | 2-436 | 
| Cow position: | chr6:14840636-14841062 (view UCSC Genome Browser custom track) | 
| Alignm length: | 442 | 
| Alignm identity: | 332 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 23, 111 | 
| Conread position: | 2-450 | 
| Cow position: | chr6:40158712-40158273 (view UCSC Genome Browser custom track) | 
| Alignm length: | 457 | 
| Alignm identity: | 322 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 23, 76 | 
| Conread position: | 2-637 | 
| Cow position: | chr6:26772319-26771688 (view UCSC Genome Browser custom track) | 
| Alignm length: | 647 | 
| Alignm identity: | 489 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 23, 307 | 
| Conread position: | 2-651 | 
| Cow position: | chr6:44950658-44950010 (view UCSC Genome Browser custom track) | 
| Alignm length: | 664 | 
| Alignm identity: | 433 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 25, 285 | 
| Conread position: | 2-663 | 
| Cow position: | chr6:1536513-1537167 (view UCSC Genome Browser custom track) | 
| Alignm length: | 671 | 
| Alignm identity: | 504 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 12, 49 | 
| Conread position: | 2-664 | 
| Cow position: | chr6:182738-182090 (view UCSC Genome Browser custom track) | 
| Alignm length: | 671 | 
| Alignm identity: | 493 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 23, 307 | 
| Conread position: | 2-664 | 
| Cow position: | chr6:11639420-11638743 (view UCSC Genome Browser custom track) | 
| Alignm length: | 703 | 
| Alignm identity: | 505 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 135 | 
| Conread position: | 2-664 | 
| Cow position: | chr6:15138364-15137710 (view UCSC Genome Browser custom track) | 
| Alignm length: | 677 | 
| Alignm identity: | 508 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 161 | 
| Conread position: | 2-664 | 
| Cow position: | chr6:24242093-24242750 (view UCSC Genome Browser custom track) | 
| Alignm length: | 677 | 
| Alignm identity: | 514 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 23, 196 | 
| Conread position: | 2-664 | 
| Cow position: | chr6:39331728-39331070 (view UCSC Genome Browser custom track) | 
| Alignm length: | 677 | 
| Alignm identity: | 507 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 23, 76 | 
| Conread position: | 2-664 | 
| Cow position: | chr6:40550896-40550237 (view UCSC Genome Browser custom track) | 
| Alignm length: | 679 | 
| Alignm identity: | 513 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 132 | 
| Conread position: | 2-664 | 
| Cow position: | chr6:43186907-43187572 (view UCSC Genome Browser custom track) | 
| Alignm length: | 677 | 
| Alignm identity: | 505 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 23, 321 | 
| Conread position: | 2-664 | 
| Cow position: | chr6:44018025-44017365 (view UCSC Genome Browser custom track) | 
| Alignm length: | 677 | 
| Alignm identity: | 500 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 23, 103 | 
| Conread position: | 2-664 | 
| Cow position: | chr6:46947622-46948278 (view UCSC Genome Browser custom track) | 
| Alignm length: | 677 | 
| Alignm identity: | 508 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 23, 13 | 
| Conread position: | 3-487 | 
| Cow position: | chr6:65930047-65930539 (view UCSC Genome Browser custom track) | 
| Alignm length: | 496 | 
| Alignm identity: | 360 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 22, 289 | 
| Conread position: | 3-509 | 
| Cow position: | chr6:12628709-12629193 (view UCSC Genome Browser custom track) | 
| Alignm length: | 512 | 
| Alignm identity: | 387 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 20, 34 | 
| Conread position: | 3-602 | 
| Cow position: | chr6:27475215-27475803 (view UCSC Genome Browser custom track) | 
| Alignm length: | 612 | 
| Alignm identity: | 466 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 22, 255 | 
| Conread position: | 3-654 | 
| Cow position: | chr6:14950863-14950203 (view UCSC Genome Browser custom track) | 
| Alignm length: | 682 | 
| Alignm identity: | 506 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 28, 229 | 
| Conread position: | 3-664 | 
| Cow position: | chr6:45480273-45479625 (view UCSC Genome Browser custom track) | 
| Alignm length: | 676 | 
| Alignm identity: | 504 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 22, 184 | 
| Conread position: | 3-664 | 
| Cow position: | chr6:47040406-47039748 (view UCSC Genome Browser custom track) | 
| Alignm length: | 676 | 
| Alignm identity: | 510 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 22, 306 | 
| Conread position: | 4-635 | 
| Cow position: | chr6:28160216-28160841 (view UCSC Genome Browser custom track) | 
| Alignm length: | 641 | 
| Alignm identity: | 485 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 21, 302 | 
| Conread position: | 4-649 | 
| Cow position: | chr6:50121123-50120483 (view UCSC Genome Browser custom track) | 
| Alignm length: | 659 | 
| Alignm identity: | 496 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 21, 295 | 
| Conread position: | 5-573 | 
| Cow position: | chr6:68029984-68030549 (view UCSC Genome Browser custom track) | 
| Alignm length: | 581 | 
| Alignm identity: | 439 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 20, 304 | 
| Conread position: | 5-630 | 
| Cow position: | chr6:16418880-16418255 (view UCSC Genome Browser custom track) | 
| Alignm length: | 642 | 
| Alignm identity: | 485 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 20, 121 | 
| Conread position: | 5-637 | 
| Cow position: | chr6:26668218-26667591 (view UCSC Genome Browser custom track) | 
| Alignm length: | 645 | 
| Alignm identity: | 496 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 28, 191 | 
| Conread position: | 5-659 | 
| Cow position: | chr6:44147141-44146490 (view UCSC Genome Browser custom track) | 
| Alignm length: | 668 | 
| Alignm identity: | 501 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 18, 302 | 
| Conread position: | 5-664 | 
| Cow position: | chr6:55238502-55239153 (view UCSC Genome Browser custom track) | 
| Alignm length: | 675 | 
| Alignm identity: | 509 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 44, 303 | 
| Conread position: | 7-649 | 
| Cow position: | chr6:16703924-16703299 (view UCSC Genome Browser custom track) | 
| Alignm length: | 661 | 
| Alignm identity: | 489 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 18, 136 | 
| Conread position: | 7-664 | 
| Cow position: | chr6:55592863-55593533 (view UCSC Genome Browser custom track) | 
| Alignm length: | 674 | 
| Alignm identity: | 497 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 18, 117 | 
| Conread position: | 9-663 | 
| Cow position: | chr6:65819770-65819120 (view UCSC Genome Browser custom track) | 
| Alignm length: | 667 | 
| Alignm identity: | 491 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 16, 299 | 
| Conread position: | 9-664 | 
| Cow position: | chr6:28001567-28000933 (view UCSC Genome Browser custom track) | 
| Alignm length: | 668 | 
| Alignm identity: | 488 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 16, 225 | 
| Conread position: | 11-664 | 
| Cow position: | chr6:6556770-6557424 (view UCSC Genome Browser custom track) | 
| Alignm length: | 670 | 
| Alignm identity: | 502 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 17, 300 | 
| Conread position: | 16-487 | 
| Cow position: | chr6:57181636-57182095 (view UCSC Genome Browser custom track) | 
| Alignm length: | 480 | 
| Alignm identity: | 362 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 9, 274 | 
| Conread position: | 20-664 | 
| Cow position: | chr6:9234333-9234974 (view UCSC Genome Browser custom track) | 
| Alignm length: | 658 | 
| Alignm identity: | 493 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 288 | 
| Conread position: | 22-631 | 
| Cow position: | chr6:24632421-24631823 (view UCSC Genome Browser custom track) | 
| Alignm length: | 622 | 
| Alignm identity: | 451 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 22, 112 | 
| Conread position: | 26-288 | 
| Cow position: | chr6:14264672-14264930 (view UCSC Genome Browser custom track) | 
| Alignm length: | 267 | 
| Alignm identity: | 198 | 
| Alignm E-value: | 2.00386e-43 | 
| Alignm gaps (pig, cow): | 18, 179 | 
| Conread position: | 30-664 | 
| Cow position: | chr6:6182872-6182263 (view UCSC Genome Browser custom track) | 
| Alignm length: | 641 | 
| Alignm identity: | 488 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 17, 44 | 
| Conread position: | 37-386 | 
| Cow position: | chr6:11829796-11829453 (view UCSC Genome Browser custom track) | 
| Alignm length: | 353 | 
| Alignm identity: | 272 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 9, 267 | 
| Conread position: | 37-567 | 
| Cow position: | chr6:25358028-25357503 (view UCSC Genome Browser custom track) | 
| Alignm length: | 550 | 
| Alignm identity: | 406 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 11, 60 | 
| Conread position: | 37-576 | 
| Cow position: | chr6:52899794-52900319 (view UCSC Genome Browser custom track) | 
| Alignm length: | 546 | 
| Alignm identity: | 385 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 355, 83 | 
| Conread position: | 37-583 | 
| Cow position: | chr6:10571052-10570509 (view UCSC Genome Browser custom track) | 
| Alignm length: | 556 | 
| Alignm identity: | 370 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 9, 73 | 
| Conread position: | 37-623 | 
| Cow position: | chr6:27341444-27342015 (view UCSC Genome Browser custom track) | 
| Alignm length: | 589 | 
| Alignm identity: | 371 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 35, 19 | 
| Conread position: | 37-630 | 
| Cow position: | chr6:10650940-10650367 (view UCSC Genome Browser custom track) | 
| Alignm length: | 601 | 
| Alignm identity: | 440 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 354, 108 | 
| Conread position: | 37-634 | 
| Cow position: | chr6:58605372-58605961 (view UCSC Genome Browser custom track) | 
| Alignm length: | 613 | 
| Alignm identity: | 466 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 10, 163 | 
| Conread position: | 37-657 | 
| Cow position: | chr6:60167708-60167107 (view UCSC Genome Browser custom track) | 
| Alignm length: | 632 | 
| Alignm identity: | 427 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 9, 41 | 
| Conread position: | 37-664 | 
| Cow position: | chr6:22044166-22043546 (view UCSC Genome Browser custom track) | 
| Alignm length: | 639 | 
| Alignm identity: | 486 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 13, 267 | 
| Conread position: | 37-664 | 
| Cow position: | chr6:60332185-60332808 (view UCSC Genome Browser custom track) | 
| Alignm length: | 639 | 
| Alignm identity: | 490 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 12, 267 | 
| Conread position: | 39-637 | 
| Cow position: | chr6:3573641-3574220 (view UCSC Genome Browser custom track) | 
| Alignm length: | 603 | 
| Alignm identity: | 465 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 10, 43 | 
| Conread position: | 40-275 | 
| Cow position: | chr6:13315467-13315232 (view UCSC Genome Browser custom track) | 
| Alignm length: | 236 | 
| Alignm identity: | 187 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 42-649 | 
| Cow position: | chr6:55474155-55474753 (view UCSC Genome Browser custom track) | 
| Alignm length: | 616 | 
| Alignm identity: | 439 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 30, 20 | 
| Conread position: | 46-664 | 
| Cow position: | chr6:8205044-8205650 (view UCSC Genome Browser custom track) | 
| Alignm length: | 629 | 
| Alignm identity: | 483 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 343, 111 | 
| Conread position: | 46-664 | 
| Cow position: | chr6:50571040-50571654 (view UCSC Genome Browser custom track) | 
| Alignm length: | 630 | 
| Alignm identity: | 474 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 124, 260 | 
| Conread position: | 46-664 | 
| Cow position: | chr6:58030632-58031239 (view UCSC Genome Browser custom track) | 
| Alignm length: | 628 | 
| Alignm identity: | 477 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 345, 156 | 
| Conread position: | 48-637 | 
| Cow position: | chr6:28550207-28549602 (view UCSC Genome Browser custom track) | 
| Alignm length: | 613 | 
| Alignm identity: | 424 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 341, 138 | 
| Conread position: | 48-664 | 
| Cow position: | chr6:1498056-1498664 (view UCSC Genome Browser custom track) | 
| Alignm length: | 630 | 
| Alignm identity: | 436 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 343, 14 | 
| Conread position: | 53-664 | 
| Cow position: | chr6:57521031-57521638 (view UCSC Genome Browser custom track) | 
| Alignm length: | 623 | 
| Alignm identity: | 468 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 253 | 
| Conread position: | 55-631 | 
| Cow position: | chr6:32419814-32420375 (view UCSC Genome Browser custom track) | 
| Alignm length: | 583 | 
| Alignm identity: | 422 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 76, 54 | 
| Conread position: | 58-664 | 
| Cow position: | chr6:4467475-4468083 (view UCSC Genome Browser custom track) | 
| Alignm length: | 624 | 
| Alignm identity: | 455 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 237, 336 | 
| Conread position: | 62-443 | 
| Cow position: | chr6:39897818-39898187 (view UCSC Genome Browser custom track) | 
| Alignm length: | 384 | 
| Alignm identity: | 290 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 329, 241 | 
| Conread position: | 72-521 | 
| Cow position: | chr6:2452723-2453164 (view UCSC Genome Browser custom track) | 
| Alignm length: | 459 | 
| Alignm identity: | 348 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 9, 140 | 
| Conread position: | 77-637 | 
| Cow position: | chr6:55945542-55944995 (view UCSC Genome Browser custom track) | 
| Alignm length: | 568 | 
| Alignm identity: | 378 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 314, 191 | 
| Conread position: | 80-623 | 
| Cow position: | chr6:62001463-62000924 (view UCSC Genome Browser custom track) | 
| Alignm length: | 560 | 
| Alignm identity: | 367 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 67, 108 | 
| Conread position: | 84-664 | 
| Cow position: | chr6:67553123-67553695 (view UCSC Genome Browser custom track) | 
| Alignm length: | 589 | 
| Alignm identity: | 443 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 307, 125 | 
| Conread position: | 85-631 | 
| Cow position: | chr6:618307-618840 (view UCSC Genome Browser custom track) | 
| Alignm length: | 554 | 
| Alignm identity: | 391 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 306, 184 | 
| Conread position: | 87-507 | 
| Cow position: | chr6:43049302-43048890 (view UCSC Genome Browser custom track) | 
| Alignm length: | 427 | 
| Alignm identity: | 320 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 304, 216 | 
| Conread position: | 93-664 | 
| Cow position: | chr6:705905-706461 (view UCSC Genome Browser custom track) | 
| Alignm length: | 580 | 
| Alignm identity: | 439 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 298, 83 | 
| Conread position: | 93-664 | 
| Cow position: | chr6:31940766-31941330 (view UCSC Genome Browser custom track) | 
| Alignm length: | 580 | 
| Alignm identity: | 441 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 298, 210 | 
| Conread position: | 94-514 | 
| Cow position: | chr6:4388640-4389055 (view UCSC Genome Browser custom track) | 
| Alignm length: | 430 | 
| Alignm identity: | 326 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 295, 209 | 
| Conread position: | 95-625 | 
| Cow position: | chr6:6595324-6595841 (view UCSC Genome Browser custom track) | 
| Alignm length: | 540 | 
| Alignm identity: | 368 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 267, 212 | 
| Conread position: | 100-619 | 
| Cow position: | chr6:47526162-47526678 (view UCSC Genome Browser custom track) | 
| Alignm length: | 535 | 
| Alignm identity: | 345 | 
| Alignm E-value: | 9e-39 | 
| Alignm gaps (pig, cow): | 60, 117 | 
| Conread position: | 105-635 | 
| Cow position: | chr6:67173466-67173987 (view UCSC Genome Browser custom track) | 
| Alignm length: | 538 | 
| Alignm identity: | 412 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 286, 198 | 
| Conread position: | 108-481 | 
| Cow position: | chr6:55042207-55041854 (view UCSC Genome Browser custom track) | 
| Alignm length: | 376 | 
| Alignm identity: | 280 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 281, 29 | 
| Conread position: | 110-564 | 
| Cow position: | chr6:33983739-33984173 (view UCSC Genome Browser custom track) | 
| Alignm length: | 462 | 
| Alignm identity: | 331 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 66, 98 | 
| Conread position: | 113-664 | 
| Cow position: | chr6:12997340-12997882 (view UCSC Genome Browser custom track) | 
| Alignm length: | 559 | 
| Alignm identity: | 422 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 7, 41 | 
| Conread position: | 115-651 | 
| Cow position: | chr6:27527038-27526516 (view UCSC Genome Browser custom track) | 
| Alignm length: | 546 | 
| Alignm identity: | 412 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 273, 87 | 
| Conread position: | 119-466 | 
| Cow position: | chr6:40759955-40760281 (view UCSC Genome Browser custom track) | 
| Alignm length: | 349 | 
| Alignm identity: | 256 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 270, 163 | 
| Conread position: | 120-634 | 
| Cow position: | chr6:16624707-16625211 (view UCSC Genome Browser custom track) | 
| Alignm length: | 526 | 
| Alignm identity: | 360 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 269, 24 | 
| Conread position: | 121-483 | 
| Cow position: | chr6:67211662-67211317 (view UCSC Genome Browser custom track) | 
| Alignm length: | 366 | 
| Alignm identity: | 278 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 8, 184 | 
| Conread position: | 122-648 | 
| Cow position: | chr6:34030215-34030700 (view UCSC Genome Browser custom track) | 
| Alignm length: | 528 | 
| Alignm identity: | 357 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 322, 107 | 
| Conread position: | 123-545 | 
| Cow position: | chr6:18497228-18497664 (view UCSC Genome Browser custom track) | 
| Alignm length: | 440 | 
| Alignm identity: | 301 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 8, 315 | 
| Conread position: | 123-631 | 
| Cow position: | chr6:38988865-38988396 (view UCSC Genome Browser custom track) | 
| Alignm length: | 512 | 
| Alignm identity: | 340 | 
| Alignm E-value: | 1.00053e-42 | 
| Alignm gaps (pig, cow): | 268, 30 | 
| Conread position: | 123-637 | 
| Cow position: | chr6:50113620-50114107 (view UCSC Genome Browser custom track) | 
| Alignm length: | 520 | 
| Alignm identity: | 386 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 345, 7 | 
| Conread position: | 123-637 | 
| Cow position: | chr6:52978226-52977733 (view UCSC Genome Browser custom track) | 
| Alignm length: | 520 | 
| Alignm identity: | 368 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 116, 61 | 
| Conread position: | 124-664 | 
| Cow position: | chr6:33809504-33808971 (view UCSC Genome Browser custom track) | 
| Alignm length: | 549 | 
| Alignm identity: | 415 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 267, 179 | 
| Conread position: | 125-659 | 
| Cow position: | chr6:47171013-47171520 (view UCSC Genome Browser custom track) | 
| Alignm length: | 539 | 
| Alignm identity: | 391 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 266, 169 | 
| Conread position: | 125-664 | 
| Cow position: | chr6:17112232-17111703 (view UCSC Genome Browser custom track) | 
| Alignm length: | 548 | 
| Alignm identity: | 410 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 266, 12 | 
| Conread position: | 125-664 | 
| Cow position: | chr6:17386456-17386986 (view UCSC Genome Browser custom track) | 
| Alignm length: | 548 | 
| Alignm identity: | 410 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 266, 12 | 
| Conread position: | 127-664 | 
| Cow position: | chr6:47573735-47574252 (view UCSC Genome Browser custom track) | 
| Alignm length: | 547 | 
| Alignm identity: | 390 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 56, 26 | 
| Conread position: | 128-651 | 
| Cow position: | chr6:47150035-47149520 (view UCSC Genome Browser custom track) | 
| Alignm length: | 534 | 
| Alignm identity: | 398 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 263, 156 | 
| Conread position: | 129-631 | 
| Cow position: | chr6:52245445-52245929 (view UCSC Genome Browser custom track) | 
| Alignm length: | 505 | 
| Alignm identity: | 340 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 260, 60 | 
| Conread position: | 131-533 | 
| Cow position: | chr6:58016294-58016679 (view UCSC Genome Browser custom track) | 
| Alignm length: | 410 | 
| Alignm identity: | 315 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 258, 22 | 
| Conread position: | 135-664 | 
| Cow position: | chr6:35600620-35601141 (view UCSC Genome Browser custom track) | 
| Alignm length: | 537 | 
| Alignm identity: | 379 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 256, 168 | 
| Conread position: | 136-648 | 
| Cow position: | chr6:727678-727184 (view UCSC Genome Browser custom track) | 
| Alignm length: | 521 | 
| Alignm identity: | 373 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 256, 115 | 
| Conread position: | 137-664 | 
| Cow position: | chr6:11453925-11453404 (view UCSC Genome Browser custom track) | 
| Alignm length: | 536 | 
| Alignm identity: | 401 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 254, 166 | 
| Conread position: | 138-664 | 
| Cow position: | chr6:38438550-38439074 (view UCSC Genome Browser custom track) | 
| Alignm length: | 540 | 
| Alignm identity: | 389 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 253, 164 | 
| Conread position: | 151-664 | 
| Cow position: | chr6:7105572-7105071 (view UCSC Genome Browser custom track) | 
| Alignm length: | 523 | 
| Alignm identity: | 383 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 33, 153 | 
| Conread position: | 152-660 | 
| Cow position: | chr6:32019178-32018645 (view UCSC Genome Browser custom track) | 
| Alignm length: | 541 | 
| Alignm identity: | 381 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 164, 137 | 
| Conread position: | 152-664 | 
| Cow position: | chr6:2186824-2186319 (view UCSC Genome Browser custom track) | 
| Alignm length: | 522 | 
| Alignm identity: | 382 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 237, 151 | 
| Conread position: | 153-569 | 
| Cow position: | chr6:41531539-41531959 (view UCSC Genome Browser custom track) | 
| Alignm length: | 428 | 
| Alignm identity: | 293 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 122, 133 | 
| Conread position: | 153-651 | 
| Cow position: | chr6:29085416-29084935 (view UCSC Genome Browser custom track) | 
| Alignm length: | 502 | 
| Alignm identity: | 336 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 239, 147 | 
| Conread position: | 153-664 | 
| Cow position: | chr6:1796586-1797088 (view UCSC Genome Browser custom track) | 
| Alignm length: | 520 | 
| Alignm identity: | 394 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 238, 150 | 
| Conread position: | 158-637 | 
| Cow position: | chr6:67448962-67448492 (view UCSC Genome Browser custom track) | 
| Alignm length: | 486 | 
| Alignm identity: | 369 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 233, 145 | 
| Conread position: | 159-633 | 
| Cow position: | chr6:7112968-7112508 (view UCSC Genome Browser custom track) | 
| Alignm length: | 488 | 
| Alignm identity: | 339 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 117, 70 | 
| Conread position: | 163-649 | 
| Cow position: | chr6:14897153-14897628 (view UCSC Genome Browser custom track) | 
| Alignm length: | 495 | 
| Alignm identity: | 351 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 125, 64 | 
| Conread position: | 163-656 | 
| Cow position: | chr6:2087490-2087976 (view UCSC Genome Browser custom track) | 
| Alignm length: | 503 | 
| Alignm identity: | 325 | 
| Alignm E-value: | 1.00053e-42 | 
| Alignm gaps (pig, cow): | 80, 137 | 
| Conread position: | 166-617 | 
| Cow position: | chr6:26748533-26748090 (view UCSC Genome Browser custom track) | 
| Alignm length: | 462 | 
| Alignm identity: | 296 | 
| Alignm E-value: | 4e-31 | 
| Alignm gaps (pig, cow): | 215, 97 | 
| Conread position: | 169-637 | 
| Cow position: | chr6:63177018-63177477 (view UCSC Genome Browser custom track) | 
| Alignm length: | 475 | 
| Alignm identity: | 356 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 222, 134 | 
| Conread position: | 174-637 | 
| Cow position: | chr6:2618583-2618133 (view UCSC Genome Browser custom track) | 
| Alignm length: | 471 | 
| Alignm identity: | 362 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 196, 61 | 
| Conread position: | 174-637 | 
| Cow position: | chr6:17556692-17556239 (view UCSC Genome Browser custom track) | 
| Alignm length: | 471 | 
| Alignm identity: | 372 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 176, 129 | 
| Conread position: | 174-664 | 
| Cow position: | chr6:452283-451800 (view UCSC Genome Browser custom track) | 
| Alignm length: | 501 | 
| Alignm identity: | 377 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 217, 129 | 
| Conread position: | 178-664 | 
| Cow position: | chr6:21857381-21856912 (view UCSC Genome Browser custom track) | 
| Alignm length: | 496 | 
| Alignm identity: | 366 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 9, 20 | 
| Conread position: | 179-435 | 
| Cow position: | chr6:13850723-13850968 (view UCSC Genome Browser custom track) | 
| Alignm length: | 259 | 
| Alignm identity: | 197 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 212, 124 | 
| Conread position: | 179-637 | 
| Cow position: | chr6:843843-843393 (view UCSC Genome Browser custom track) | 
| Alignm length: | 465 | 
| Alignm identity: | 352 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 212, 124 | 
| Conread position: | 183-607 | 
| Cow position: | chr6:13405218-13405624 (view UCSC Genome Browser custom track) | 
| Alignm length: | 427 | 
| Alignm identity: | 282 | 
| Alignm E-value: | 3e-40 | 
| Alignm gaps (pig, cow): | 208, 15 | 
| Conread position: | 183-619 | 
| Cow position: | chr6:22805852-22805424 (view UCSC Genome Browser custom track) | 
| Alignm length: | 450 | 
| Alignm identity: | 288 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 208, 99 | 
| Conread position: | 184-590 | 
| Cow position: | chr6:43039077-43038683 (view UCSC Genome Browser custom track) | 
| Alignm length: | 416 | 
| Alignm identity: | 304 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 207, 69 | 
| Conread position: | 184-664 | 
| Cow position: | chr6:21711694-21712169 (view UCSC Genome Browser custom track) | 
| Alignm length: | 491 | 
| Alignm identity: | 374 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 39, 121 | 
| Conread position: | 184-664 | 
| Cow position: | chr6:23880066-23879596 (view UCSC Genome Browser custom track) | 
| Alignm length: | 489 | 
| Alignm identity: | 363 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 207, 119 | 
| Conread position: | 185-617 | 
| Cow position: | chr6:64425783-64426201 (view UCSC Genome Browser custom track) | 
| Alignm length: | 437 | 
| Alignm identity: | 319 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 202, 122 | 
| Conread position: | 185-656 | 
| Cow position: | chr6:12926564-12927027 (view UCSC Genome Browser custom track) | 
| Alignm length: | 480 | 
| Alignm identity: | 375 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 206, 118 | 
| Conread position: | 189-651 | 
| Cow position: | chr6:28481332-28481773 (view UCSC Genome Browser custom track) | 
| Alignm length: | 469 | 
| Alignm identity: | 347 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 204, 46 | 
| Conread position: | 195-630 | 
| Cow position: | chr6:10598005-10598428 (view UCSC Genome Browser custom track) | 
| Alignm length: | 440 | 
| Alignm identity: | 298 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 172, 68 | 
| Conread position: | 195-660 | 
| Cow position: | chr6:23568592-23568134 (view UCSC Genome Browser custom track) | 
| Alignm length: | 474 | 
| Alignm identity: | 360 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 196, 108 | 
| Conread position: | 195-664 | 
| Cow position: | chr6:6034796-6034337 (view UCSC Genome Browser custom track) | 
| Alignm length: | 476 | 
| Alignm identity: | 357 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 196, 108 | 
| Conread position: | 196-617 | 
| Cow position: | chr6:49761465-49761877 (view UCSC Genome Browser custom track) | 
| Alignm length: | 425 | 
| Alignm identity: | 328 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 195, 121 | 
| Conread position: | 201-664 | 
| Cow position: | chr6:40813372-40813824 (view UCSC Genome Browser custom track) | 
| Alignm length: | 471 | 
| Alignm identity: | 350 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 188, 102 | 
| Conread position: | 204-664 | 
| Cow position: | chr6:3485409-3484956 (view UCSC Genome Browser custom track) | 
| Alignm length: | 469 | 
| Alignm identity: | 351 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 185, 99 | 
| Conread position: | 206-664 | 
| Cow position: | chr6:57856781-57857233 (view UCSC Genome Browser custom track) | 
| Alignm length: | 469 | 
| Alignm identity: | 351 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 137, 97 | 
| Conread position: | 213-598 | 
| Cow position: | chr6:46633137-46633513 (view UCSC Genome Browser custom track) | 
| Alignm length: | 392 | 
| Alignm identity: | 301 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 9, 91 | 
| Conread position: | 213-638 | 
| Cow position: | chr6:224489-224073 (view UCSC Genome Browser custom track) | 
| Alignm length: | 438 | 
| Alignm identity: | 318 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 26, 97 | 
| Conread position: | 213-656 | 
| Cow position: | chr6:32286572-32287004 (view UCSC Genome Browser custom track) | 
| Alignm length: | 451 | 
| Alignm identity: | 320 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 92 | 
| Conread position: | 220-631 | 
| Cow position: | chr6:45736817-45736440 (view UCSC Genome Browser custom track) | 
| Alignm length: | 416 | 
| Alignm identity: | 298 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 268, 79 | 
| Conread position: | 223-612 | 
| Cow position: | chr6:30492221-30491849 (view UCSC Genome Browser custom track) | 
| Alignm length: | 395 | 
| Alignm identity: | 256 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 191, 61 | 
| Conread position: | 223-637 | 
| Cow position: | chr6:18987172-18987560 (view UCSC Genome Browser custom track) | 
| Alignm length: | 417 | 
| Alignm identity: | 309 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 166, 67 | 
| Conread position: | 226-623 | 
| Cow position: | chr6:62326306-62326690 (view UCSC Genome Browser custom track) | 
| Alignm length: | 405 | 
| Alignm identity: | 266 | 
| Alignm E-value: | 1e-32 | 
| Alignm gaps (pig, cow): | 165, 71 | 
| Conread position: | 227-663 | 
| Cow position: | chr6:1834027-1834457 (view UCSC Genome Browser custom track) | 
| Alignm length: | 448 | 
| Alignm identity: | 332 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 77 | 
| Conread position: | 229-637 | 
| Cow position: | chr6:15471775-15471379 (view UCSC Genome Browser custom track) | 
| Alignm length: | 420 | 
| Alignm identity: | 272 | 
| Alignm E-value: | 6e-25 | 
| Alignm gaps (pig, cow): | 161, 20 | 
| Conread position: | 230-664 | 
| Cow position: | chr6:46764366-46763943 (view UCSC Genome Browser custom track) | 
| Alignm length: | 443 | 
| Alignm identity: | 339 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 159, 73 | 
| Conread position: | 230-664 | 
| Cow position: | chr6:53537108-53537539 (view UCSC Genome Browser custom track) | 
| Alignm length: | 447 | 
| Alignm identity: | 327 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 11, 76 | 
| Conread position: | 235-587 | 
| Cow position: | chr6:34405342-34405686 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 275 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 154, 68 | 
| Conread position: | 238-637 | 
| Cow position: | chr6:39136546-39136932 (view UCSC Genome Browser custom track) | 
| Alignm length: | 407 | 
| Alignm identity: | 312 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 121, 65 | 
| Conread position: | 239-664 | 
| Cow position: | chr6:46284054-46283642 (view UCSC Genome Browser custom track) | 
| Alignm length: | 430 | 
| Alignm identity: | 297 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 250, 65 | 
| Conread position: | 243-650 | 
| Cow position: | chr6:35704472-35704070 (view UCSC Genome Browser custom track) | 
| Alignm length: | 421 | 
| Alignm identity: | 308 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 130, 60 | 
| Conread position: | 246-637 | 
| Cow position: | chr6:6944887-6944513 (view UCSC Genome Browser custom track) | 
| Alignm length: | 395 | 
| Alignm identity: | 279 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 145, 61 | 
| Conread position: | 249-637 | 
| Cow position: | chr6:16410115-16410488 (view UCSC Genome Browser custom track) | 
| Alignm length: | 393 | 
| Alignm identity: | 294 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 233, 35 | 
| Conread position: | 249-664 | 
| Cow position: | chr6:18804003-18803596 (view UCSC Genome Browser custom track) | 
| Alignm length: | 424 | 
| Alignm identity: | 311 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 142, 54 | 
| Conread position: | 257-642 | 
| Cow position: | chr6:13314966-13314591 (view UCSC Genome Browser custom track) | 
| Alignm length: | 394 | 
| Alignm identity: | 290 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 132, 46 | 
| Conread position: | 258-583 | 
| Cow position: | chr6:4274133-4274449 (view UCSC Genome Browser custom track) | 
| Alignm length: | 332 | 
| Alignm identity: | 233 | 
| Alignm E-value: | 4.00001e-41 | 
| Alignm gaps (pig, cow): | 22, 50 | 
| Conread position: | 259-660 | 
| Cow position: | chr6:24624073-24623683 (view UCSC Genome Browser custom track) | 
| Alignm length: | 408 | 
| Alignm identity: | 287 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 224, 48 | 
| Conread position: | 260-664 | 
| Cow position: | chr6:10681060-10681447 (view UCSC Genome Browser custom track) | 
| Alignm length: | 409 | 
| Alignm identity: | 300 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 131, 34 | 
| Conread position: | 293-651 | 
| Cow position: | chr6:33300749-33301118 (view UCSC Genome Browser custom track) | 
| Alignm length: | 372 | 
| Alignm identity: | 272 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 10, 147 | 
| Conread position: | 305-637 | 
| Cow position: | chr6:6471836-6471502 (view UCSC Genome Browser custom track) | 
| Alignm length: | 340 | 
| Alignm identity: | 254 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 17, 112 | 
| Conread position: | 310-586 | 
| Cow position: | chr6:25180079-25179802 (view UCSC Genome Browser custom track) | 
| Alignm length: | 282 | 
| Alignm identity: | 217 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 79, 120 | 
| Conread position: | 312-658 | 
| Cow position: | chr6:55903194-55903546 (view UCSC Genome Browser custom track) | 
| Alignm length: | 355 | 
| Alignm identity: | 266 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 79, 143 | 
| Conread position: | 312-664 | 
| Cow position: | chr6:8754350-8753992 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 272 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 10, 94 | 
| Conread position: | 313-664 | 
| Cow position: | chr6:4903893-4903538 (view UCSC Genome Browser custom track) | 
| Alignm length: | 360 | 
| Alignm identity: | 257 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 139 | 
| Conread position: | 319-435 | 
| Cow position: | chr6:28178332-28178450 (view UCSC Genome Browser custom track) | 
| Alignm length: | 119 | 
| Alignm identity: | 95 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 72, 0 | 
| Conread position: | 319-486 | 
| Cow position: | chr6:50113164-50113332 (view UCSC Genome Browser custom track) | 
| Alignm length: | 170 | 
| Alignm identity: | 128 | 
| Alignm E-value: | 3e-29 | 
| Alignm gaps (pig, cow): | 70, 120 | 
| Conread position: | 319-512 | 
| Cow position: | chr6:33996859-33997053 (view UCSC Genome Browser custom track) | 
| Alignm length: | 196 | 
| Alignm identity: | 110 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 72, 120 | 
| Conread position: | 319-518 | 
| Cow position: | chr6:9587647-9587850 (view UCSC Genome Browser custom track) | 
| Alignm length: | 206 | 
| Alignm identity: | 158 | 
| Alignm E-value: | 3e-37 | 
| Alignm gaps (pig, cow): | 72, 120 | 
| Conread position: | 319-522 | 
| Cow position: | chr6:28399660-28399454 (view UCSC Genome Browser custom track) | 
| Alignm length: | 210 | 
| Alignm identity: | 163 | 
| Alignm E-value: | 3e-39 | 
| Alignm gaps (pig, cow): | 72, 122 | 
| Conread position: | 319-587 | 
| Cow position: | chr6:50485670-50485400 (view UCSC Genome Browser custom track) | 
| Alignm length: | 276 | 
| Alignm identity: | 209 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 70, 20 | 
| Conread position: | 319-610 | 
| Cow position: | chr6:27939146-27939440 (view UCSC Genome Browser custom track) | 
| Alignm length: | 298 | 
| Alignm identity: | 228 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 72, 120 | 
| Conread position: | 319-625 | 
| Cow position: | chr6:49963841-49963526 (view UCSC Genome Browser custom track) | 
| Alignm length: | 318 | 
| Alignm identity: | 200 | 
| Alignm E-value: | 5.04467e-44 | 
| Alignm gaps (pig, cow): | 20, 121 | 
| Conread position: | 319-628 | 
| Cow position: | chr6:58595294-58594984 (view UCSC Genome Browser custom track) | 
| Alignm length: | 313 | 
| Alignm identity: | 213 | 
| Alignm E-value: | 1e-39 | 
| Alignm gaps (pig, cow): | 70, 119 | 
| Conread position: | 319-631 | 
| Cow position: | chr6:52066009-52065693 (view UCSC Genome Browser custom track) | 
| Alignm length: | 319 | 
| Alignm identity: | 245 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 70, 120 | 
| Conread position: | 319-634 | 
| Cow position: | chr6:28157153-28156839 (view UCSC Genome Browser custom track) | 
| Alignm length: | 322 | 
| Alignm identity: | 217 | 
| Alignm E-value: | 6e-34 | 
| Alignm gaps (pig, cow): | 70, 90 | 
| Conread position: | 319-637 | 
| Cow position: | chr6:6569115-6568800 (view UCSC Genome Browser custom track) | 
| Alignm length: | 325 | 
| Alignm identity: | 243 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 72, 20 | 
| Conread position: | 319-637 | 
| Cow position: | chr6:16645008-16645318 (view UCSC Genome Browser custom track) | 
| Alignm length: | 321 | 
| Alignm identity: | 238 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 70, 119 | 
| Conread position: | 319-637 | 
| Cow position: | chr6:27094474-27094153 (view UCSC Genome Browser custom track) | 
| Alignm length: | 325 | 
| Alignm identity: | 245 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 72, 120 | 
| Conread position: | 319-637 | 
| Cow position: | chr6:43087484-43087170 (view UCSC Genome Browser custom track) | 
| Alignm length: | 321 | 
| Alignm identity: | 238 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 72, 97 | 
| Conread position: | 319-649 | 
| Cow position: | chr6:42988688-42988359 (view UCSC Genome Browser custom track) | 
| Alignm length: | 337 | 
| Alignm identity: | 233 | 
| Alignm E-value: | 9.99967e-42 | 
| Alignm gaps (pig, cow): | 114, 43 | 
| Conread position: | 319-660 | 
| Cow position: | chr6:29484093-29484437 (view UCSC Genome Browser custom track) | 
| Alignm length: | 348 | 
| Alignm identity: | 253 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 20, 100 | 
| Conread position: | 319-663 | 
| Cow position: | chr6:1263280-1263618 (view UCSC Genome Browser custom track) | 
| Alignm length: | 349 | 
| Alignm identity: | 257 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 70, 21 | 
| Conread position: | 319-664 | 
| Cow position: | chr6:1274733-1274391 (view UCSC Genome Browser custom track) | 
| Alignm length: | 355 | 
| Alignm identity: | 263 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 72, 97 | 
| Conread position: | 319-664 | 
| Cow position: | chr6:11401432-11401783 (view UCSC Genome Browser custom track) | 
| Alignm length: | 354 | 
| Alignm identity: | 265 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 72, 120 | 
| Conread position: | 319-664 | 
| Cow position: | chr6:19718697-19719032 (view UCSC Genome Browser custom track) | 
| Alignm length: | 355 | 
| Alignm identity: | 261 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 72, 119 | 
| Conread position: | 319-664 | 
| Cow position: | chr6:21163415-21163766 (view UCSC Genome Browser custom track) | 
| Alignm length: | 354 | 
| Alignm identity: | 267 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 72, 120 | 
| Conread position: | 319-664 | 
| Cow position: | chr6:43778818-43779154 (view UCSC Genome Browser custom track) | 
| Alignm length: | 348 | 
| Alignm identity: | 272 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 314, 109 | 
| Conread position: | 319-664 | 
| Cow position: | chr6:56925844-56926196 (view UCSC Genome Browser custom track) | 
| Alignm length: | 355 | 
| Alignm identity: | 262 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 120 | 
| Conread position: | 320-622 | 
| Cow position: | chr6:14264141-14263838 (view UCSC Genome Browser custom track) | 
| Alignm length: | 309 | 
| Alignm identity: | 232 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 69, 103 | 
| Conread position: | 320-638 | 
| Cow position: | chr6:47539492-47539814 (view UCSC Genome Browser custom track) | 
| Alignm length: | 327 | 
| Alignm identity: | 217 | 
| Alignm E-value: | 1e-31 | 
| Alignm gaps (pig, cow): | 72, 93 | 
| Conread position: | 320-664 | 
| Cow position: | chr6:21588097-21588447 (view UCSC Genome Browser custom track) | 
| Alignm length: | 353 | 
| Alignm identity: | 272 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 69, 118 | 
| Conread position: | 321-505 | 
| Cow position: | chr6:16221014-16220829 (view UCSC Genome Browser custom track) | 
| Alignm length: | 188 | 
| Alignm identity: | 141 | 
| Alignm E-value: | 4e-32 | 
| Alignm gaps (pig, cow): | 161, 118 | 
| Conread position: | 321-586 | 
| Cow position: | chr6:45792848-45793116 (view UCSC Genome Browser custom track) | 
| Alignm length: | 274 | 
| Alignm identity: | 188 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 71, 24 | 
| Conread position: | 321-624 | 
| Cow position: | chr6:19044328-19044627 (view UCSC Genome Browser custom track) | 
| Alignm length: | 307 | 
| Alignm identity: | 241 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 49, 93 | 
| Conread position: | 321-656 | 
| Cow position: | chr6:17150060-17149716 (view UCSC Genome Browser custom track) | 
| Alignm length: | 351 | 
| Alignm identity: | 250 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 60, 126 | 
| Conread position: | 321-656 | 
| Cow position: | chr6:45666813-45666475 (view UCSC Genome Browser custom track) | 
| Alignm length: | 343 | 
| Alignm identity: | 261 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 68, 125 | 
| Conread position: | 322-637 | 
| Cow position: | chr6:6613431-6613730 (view UCSC Genome Browser custom track) | 
| Alignm length: | 318 | 
| Alignm identity: | 237 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 67, 75 | 
| Conread position: | 322-649 | 
| Cow position: | chr6:27365291-27365618 (view UCSC Genome Browser custom track) | 
| Alignm length: | 337 | 
| Alignm identity: | 223 | 
| Alignm E-value: | 9e-28 | 
| Alignm gaps (pig, cow): | 69, 18 | 
| Conread position: | 323-664 | 
| Cow position: | chr6:53810705-53811041 (view UCSC Genome Browser custom track) | 
| Alignm length: | 352 | 
| Alignm identity: | 257 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 7, 84 | 
| Conread position: | 326-649 | 
| Cow position: | chr6:15181274-15181603 (view UCSC Genome Browser custom track) | 
| Alignm length: | 333 | 
| Alignm identity: | 221 | 
| Alignm E-value: | 6e-34 | 
| Alignm gaps (pig, cow): | 65, 130 | 
| Conread position: | 327-651 | 
| Cow position: | chr6:52557516-52557205 (view UCSC Genome Browser custom track) | 
| Alignm length: | 328 | 
| Alignm identity: | 235 | 
| Alignm E-value: | 1.96182e-44 | 
| Alignm gaps (pig, cow): | 165, 52 | 
| Conread position: | 327-654 | 
| Cow position: | chr6:33896520-33896191 (view UCSC Genome Browser custom track) | 
| Alignm length: | 336 | 
| Alignm identity: | 227 | 
| Alignm E-value: | 6e-34 | 
| Alignm gaps (pig, cow): | 64, 111 | 
| Conread position: | 329-628 | 
| Cow position: | chr6:44097827-44098130 (view UCSC Genome Browser custom track) | 
| Alignm length: | 309 | 
| Alignm identity: | 216 | 
| Alignm E-value: | 3e-39 | 
| Alignm gaps (pig, cow): | 8, 111 | 
| Conread position: | 329-635 | 
| Cow position: | chr6:1402435-1402131 (view UCSC Genome Browser custom track) | 
| Alignm length: | 315 | 
| Alignm identity: | 239 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 62, 87 | 
| Conread position: | 329-635 | 
| Cow position: | chr6:1407023-1406719 (view UCSC Genome Browser custom track) | 
| Alignm length: | 315 | 
| Alignm identity: | 239 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 62, 87 | 
| Conread position: | 329-664 | 
| Cow position: | chr6:45937413-45937742 (view UCSC Genome Browser custom track) | 
| Alignm length: | 344 | 
| Alignm identity: | 258 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 62, 91 | 
| Conread position: | 331-617 | 
| Cow position: | chr6:65909448-65909741 (view UCSC Genome Browser custom track) | 
| Alignm length: | 301 | 
| Alignm identity: | 220 | 
| Alignm E-value: | 5.00264e-43 | 
| Alignm gaps (pig, cow): | 61, 99 | 
| Conread position: | 333-664 | 
| Cow position: | chr6:51876890-51877218 (view UCSC Genome Browser custom track) | 
| Alignm length: | 339 | 
| Alignm identity: | 252 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 12, 81 | 
| Conread position: | 335-625 | 
| Cow position: | chr6:14144150-14144442 (view UCSC Genome Browser custom track) | 
| Alignm length: | 297 | 
| Alignm identity: | 206 | 
| Alignm E-value: | 8e-37 | 
| Alignm gaps (pig, cow): | 54, 72 | 
| Conread position: | 340-649 | 
| Cow position: | chr6:65859202-65858907 (view UCSC Genome Browser custom track) | 
| Alignm length: | 312 | 
| Alignm identity: | 204 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 299, 61 | 
| Conread position: | 341-664 | 
| Cow position: | chr6:508388-508058 (view UCSC Genome Browser custom track) | 
| Alignm length: | 333 | 
| Alignm identity: | 252 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 50, 98 | 
| Conread position: | 341-664 | 
| Cow position: | chr6:45975633-45975962 (view UCSC Genome Browser custom track) | 
| Alignm length: | 332 | 
| Alignm identity: | 251 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 50, 98 | 
| Conread position: | 343-664 | 
| Cow position: | chr6:40251661-40251337 (view UCSC Genome Browser custom track) | 
| Alignm length: | 330 | 
| Alignm identity: | 245 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 45, 59 | 
| Conread position: | 346-660 | 
| Cow position: | chr6:12388315-12388003 (view UCSC Genome Browser custom track) | 
| Alignm length: | 319 | 
| Alignm identity: | 225 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 45, 72 | 
| Conread position: | 348-649 | 
| Cow position: | chr6:54472504-54472211 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 203 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 43, 77 | 
| Conread position: | 349-574 | 
| Cow position: | chr6:12099660-12099875 (view UCSC Genome Browser custom track) | 
| Alignm length: | 227 | 
| Alignm identity: | 174 | 
| Alignm E-value: | 3e-39 | 
| Alignm gaps (pig, cow): | 96, 29 | 
| Conread position: | 351-656 | 
| Cow position: | chr6:7215941-7216250 (view UCSC Genome Browser custom track) | 
| Alignm length: | 314 | 
| Alignm identity: | 236 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 40, 11 | 
| Conread position: | 352-637 | 
| Cow position: | chr6:5096657-5096374 (view UCSC Genome Browser custom track) | 
| Alignm length: | 288 | 
| Alignm identity: | 223 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 41, 28 | 
| Conread position: | 352-664 | 
| Cow position: | chr6:51673919-51674229 (view UCSC Genome Browser custom track) | 
| Alignm length: | 317 | 
| Alignm identity: | 227 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 39, 23 | 
| Conread position: | 355-492 | 
| Cow position: | chr6:62784918-62785057 (view UCSC Genome Browser custom track) | 
| Alignm length: | 141 | 
| Alignm identity: | 106 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 36, 86 | 
| Conread position: | 358-637 | 
| Cow position: | chr6:2111248-2110966 (view UCSC Genome Browser custom track) | 
| Alignm length: | 285 | 
| Alignm identity: | 214 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 33, 91 | 
| Conread position: | 360-575 | 
| Cow position: | chr6:57383569-57383789 (view UCSC Genome Browser custom track) | 
| Alignm length: | 223 | 
| Alignm identity: | 169 | 
| Alignm E-value: | 9e-39 | 
| Alignm gaps (pig, cow): | 31, 78 | 
| Conread position: | 361-664 | 
| Cow position: | chr6:46225808-46225502 (view UCSC Genome Browser custom track) | 
| Alignm length: | 312 | 
| Alignm identity: | 233 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 30, 78 | 
| Conread position: | 369-598 | 
| Cow position: | chr6:53742089-53742315 (view UCSC Genome Browser custom track) | 
| Alignm length: | 233 | 
| Alignm identity: | 156 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 22, 51 | 
| Conread position: | 375-649 | 
| Cow position: | chr6:54358348-54358078 (view UCSC Genome Browser custom track) | 
| Alignm length: | 277 | 
| Alignm identity: | 197 | 
| Alignm E-value: | 1e-39 | 
| Alignm gaps (pig, cow): | 61, 106 | 
| Conread position: | 375-651 | 
| Cow position: | chr6:27887080-27887357 (view UCSC Genome Browser custom track) | 
| Alignm length: | 283 | 
| Alignm identity: | 211 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 16, 75 | 
| Conread position: | 383-664 | 
| Cow position: | chr6:11389436-11389151 (view UCSC Genome Browser custom track) | 
| Alignm length: | 291 | 
| Alignm identity: | 220 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 103, 54 | 
| Conread position: | 388-637 | 
| Cow position: | chr6:1109190-1109442 (view UCSC Genome Browser custom track) | 
| Alignm length: | 254 | 
| Alignm identity: | 203 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 127 | 
| Conread position: | 388-664 | 
| Cow position: | chr6:32664919-32664638 (view UCSC Genome Browser custom track) | 
| Alignm length: | 284 | 
| Alignm identity: | 210 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 412-637 | 
| Cow position: | chr6:53461972-53461745 (view UCSC Genome Browser custom track) | 
| Alignm length: | 230 | 
| Alignm identity: | 165 | 
| Alignm E-value: | 6e-34 | 
| Alignm gaps (pig, cow): | 77, 26 | 
| Conread position: | 436-649 | 
| Cow position: | chr6:25408459-25408246 (view UCSC Genome Browser custom track) | 
| Alignm length: | 216 | 
| Alignm identity: | 165 | 
| Alignm E-value: | 9.99967e-42 | 
| Alignm gaps (pig, cow): | 203, 49 | 
| Conread position: | 449-649 | 
| Cow position: | chr6:58036525-58036729 (view UCSC Genome Browser custom track) | 
| Alignm length: | 207 | 
| Alignm identity: | 153 | 
| Alignm E-value: | 4e-32 | 
| Alignm gaps (pig, cow): | 40, 23 | 
| Conread position: | 451-616 | 
| Cow position: | chr6:32419516-32419683 (view UCSC Genome Browser custom track) | 
| Alignm length: | 170 | 
| Alignm identity: | 122 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 38, 12 | 
| Conread position: | 452-664 | 
| Cow position: | chr6:43790122-43789905 (view UCSC Genome Browser custom track) | 
| Alignm length: | 221 | 
| Alignm identity: | 173 | 
| Alignm E-value: | 9.99967e-42 | 
| Alignm gaps (pig, cow): | 37, 59 | 
| Conread position: | 452-664 | 
| Cow position: | chr6:48873078-48872861 (view UCSC Genome Browser custom track) | 
| Alignm length: | 219 | 
| Alignm identity: | 171 | 
| Alignm E-value: | 1.96182e-44 | 
| Alignm gaps (pig, cow): | 37, 63 | 
| Conread position: | 454-664 | 
| Cow position: | chr6:10266879-10266664 (view UCSC Genome Browser custom track) | 
| Alignm length: | 217 | 
| Alignm identity: | 166 | 
| Alignm E-value: | 3e-40 | 
| Alignm gaps (pig, cow): | 26, 65 | 
| Conread position: | 461-587 | 
| Cow position: | chr6:61632388-61632517 (view UCSC Genome Browser custom track) | 
| Alignm length: | 131 | 
| Alignm identity: | 112 | 
| Alignm E-value: | 1e-31 | 
| Alignm gaps (pig, cow): | 28, 54 | 
| Conread position: | 461-660 | 
| Cow position: | chr6:28112579-28112379 (view UCSC Genome Browser custom track) | 
| Alignm length: | 203 | 
| Alignm identity: | 153 | 
| Alignm E-value: | 7e-36 | 
| Alignm gaps (pig, cow): | 48, 24 | 
| Conread position: | 465-598 | 
| Cow position: | chr6:63210354-63210484 (view UCSC Genome Browser custom track) | 
| Alignm length: | 134 | 
| Alignm identity: | 107 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 13, 0 | 
| Conread position: | 468-663 | 
| Cow position: | chr6:47380949-47381146 (view UCSC Genome Browser custom track) | 
| Alignm length: | 199 | 
| Alignm identity: | 151 | 
| Alignm E-value: | 8e-37 | 
| Alignm gaps (pig, cow): | 174, 43 | 
| Conread position: | 478-655 | 
| Cow position: | chr6:40158266-40158090 (view UCSC Genome Browser custom track) | 
| Alignm length: | 179 | 
| Alignm identity: | 127 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 110, 26 | 
| Conread position: | 491-637 | 
| Cow position: | chr6:67186830-67186975 (view UCSC Genome Browser custom track) | 
| Alignm length: | 147 | 
| Alignm identity: | 112 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 20, 0 | 
| Conread position: | 496-664 | 
| Cow position: | chr6:4389004-4389175 (view UCSC Genome Browser custom track) | 
| Alignm length: | 173 | 
| Alignm identity: | 125 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 30, 16 | 
| Conread position: | 501-656 | 
| Cow position: | chr6:10602737-10602580 (view UCSC Genome Browser custom track) | 
| Alignm length: | 158 | 
| Alignm identity: | 116 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 142, 0 | 
| Conread position: | 508-658 | 
| Cow position: | chr6:49442247-49442400 (view UCSC Genome Browser custom track) | 
| Alignm length: | 154 | 
| Alignm identity: | 116 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 58, 0 | 
Show alignments to all cow chromosomes.
