Cow genome map

Conread name: Pig4-TMW8008H19

Conread position: 1-157
Cow position: chr1:43636704-43636854 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 127
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 54, 111

Conread position: 1-184
Cow position: chr1:7141762-7141581 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 133
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 96, 37

Conread position: 1-186
Cow position: chr1:48246863-48247050 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 137
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 54, 0

Conread position: 1-187
Cow position: chr1:3384998-3384812 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 144
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 142, 41

Conread position: 1-187
Cow position: chr1:67287847-67288031 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 135
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 64, 42

Conread position: 1-192
Cow position: chr1:58882756-58882554 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 147
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 45, 0

Conread position: 1-231
Cow position: chr1:59209123-59208891 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 166
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 67, 42

Conread position: 1-246
Cow position: chr1:40438151-40437905 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 170
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 58, 42

Conread position: 1-275
Cow position: chr1:6195261-6195537 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 206
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 60, 180

Conread position: 1-287
Cow position: chr1:60340327-60340616 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 204
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 185, 42

Conread position: 1-303
Cow position: chr1:77115676-77115389 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 226
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 159, 44

Conread position: 1-314
Cow position: chr1:69921408-69921089 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 232
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 142, 46

Conread position: 1-336
Cow position: chr1:61310247-61310594 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 42

Conread position: 1-349
Cow position: chr1:76558264-76558602 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 232
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 74, 37

Conread position: 1-367
Cow position: chr1:18026772-18026395 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 254
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 53, 226

Conread position: 1-367
Cow position: chr1:84226833-84227200 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 46

Conread position: 1-407
Cow position: chr1:101861038-101860633 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 272
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 173, 43

Conread position: 1-428
Cow position: chr1:30519624-30520067 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 44

Conread position: 1-498
Cow position: chr1:23052790-23053281 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 47

Conread position: 1-513
Cow position: chr1:86611168-86611691 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 43

Conread position: 1-543
Cow position: chr1:70419354-70418804 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 377
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 176, 42

Conread position: 1-544
Cow position: chr1:67292657-67293209 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 64

Conread position: 1-551
Cow position: chr1:57697139-57696573 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 391

Conread position: 1-588
Cow position: chr1:31359435-31360019 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 43

Conread position: 1-649
Cow position: chr1:86595470-86594799 (view UCSC Genome Browser custom track)
Alignm length: 675
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 330

Conread position: 1-677
Cow position: chr1:98658881-98658198 (view UCSC Genome Browser custom track)
Alignm length: 697
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 45

Conread position: 1-678
Cow position: chr1:85792705-85793405 (view UCSC Genome Browser custom track)
Alignm length: 704
Alignm identity: 512
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 42

Conread position: 1-684
Cow position: chr1:22619612-22618940 (view UCSC Genome Browser custom track)
Alignm length: 695
Alignm identity: 525
Alignm E-value: 0
Alignm gaps (pig, cow): 294, 37

Conread position: 1-686
Cow position: chr1:79635955-79635268 (view UCSC Genome Browser custom track)
Alignm length: 703
Alignm identity: 543
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 145

Conread position: 1-689
Cow position: chr1:26517861-26517154 (view UCSC Genome Browser custom track)
Alignm length: 712
Alignm identity: 530
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 43

Conread position: 1-690
Cow position: chr1:3934234-3933523 (view UCSC Genome Browser custom track)
Alignm length: 716
Alignm identity: 536
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 372

Conread position: 1-690
Cow position: chr1:5502993-5503700 (view UCSC Genome Browser custom track)
Alignm length: 714
Alignm identity: 516
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 47

Conread position: 1-690
Cow position: chr1:8826074-8826790 (view UCSC Genome Browser custom track)
Alignm length: 724
Alignm identity: 533
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 44

Conread position: 1-690
Cow position: chr1:9259505-9260221 (view UCSC Genome Browser custom track)
Alignm length: 719
Alignm identity: 514
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 42

Conread position: 1-690
Cow position: chr1:17035575-17034858 (view UCSC Genome Browser custom track)
Alignm length: 723
Alignm identity: 520
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 140

Conread position: 1-690
Cow position: chr1:20829928-20830631 (view UCSC Genome Browser custom track)
Alignm length: 719
Alignm identity: 517
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 43

Conread position: 1-690
Cow position: chr1:29035302-29036032 (view UCSC Genome Browser custom track)
Alignm length: 740
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 129

Conread position: 1-690
Cow position: chr1:29363320-29364031 (view UCSC Genome Browser custom track)
Alignm length: 721
Alignm identity: 523
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 42

Conread position: 1-690
Cow position: chr1:30533994-30533288 (view UCSC Genome Browser custom track)
Alignm length: 717
Alignm identity: 532
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 45

Conread position: 1-690
Cow position: chr1:31365071-31364367 (view UCSC Genome Browser custom track)
Alignm length: 714
Alignm identity: 523
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 16

Conread position: 1-690
Cow position: chr1:33551953-33552665 (view UCSC Genome Browser custom track)
Alignm length: 717
Alignm identity: 543
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 46

Conread position: 1-690
Cow position: chr1:33713098-33713817 (view UCSC Genome Browser custom track)
Alignm length: 726
Alignm identity: 554
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 17

Conread position: 1-690
Cow position: chr1:39544818-39545523 (view UCSC Genome Browser custom track)
Alignm length: 715
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 42

Conread position: 1-690
Cow position: chr1:40575240-40575936 (view UCSC Genome Browser custom track)
Alignm length: 712
Alignm identity: 508
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 134

Conread position: 1-690
Cow position: chr1:49973161-49972437 (view UCSC Genome Browser custom track)
Alignm length: 730
Alignm identity: 534
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 491

Conread position: 1-690
Cow position: chr1:53199565-53200280 (view UCSC Genome Browser custom track)
Alignm length: 720
Alignm identity: 534
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 118

Conread position: 1-690
Cow position: chr1:55276007-55275295 (view UCSC Genome Browser custom track)
Alignm length: 720
Alignm identity: 522
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 42

Conread position: 1-690
Cow position: chr1:56143310-56142608 (view UCSC Genome Browser custom track)
Alignm length: 712
Alignm identity: 521
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 44

Conread position: 1-690
Cow position: chr1:56193144-56192428 (view UCSC Genome Browser custom track)
Alignm length: 719
Alignm identity: 519
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 480

Conread position: 1-690
Cow position: chr1:57423810-57423096 (view UCSC Genome Browser custom track)
Alignm length: 716
Alignm identity: 520
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 483

Conread position: 1-690
Cow position: chr1:62243617-62242917 (view UCSC Genome Browser custom track)
Alignm length: 715
Alignm identity: 528
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 109

Conread position: 1-690
Cow position: chr1:68606515-68605811 (view UCSC Genome Browser custom track)
Alignm length: 714
Alignm identity: 524
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 47

Conread position: 1-690
Cow position: chr1:69404032-69404736 (view UCSC Genome Browser custom track)
Alignm length: 714
Alignm identity: 517
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 46

Conread position: 1-690
Cow position: chr1:72038543-72037816 (view UCSC Genome Browser custom track)
Alignm length: 737
Alignm identity: 530
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 99

Conread position: 1-690
Cow position: chr1:72081793-72082492 (view UCSC Genome Browser custom track)
Alignm length: 714
Alignm identity: 509
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 26

Conread position: 1-690
Cow position: chr1:72185855-72185145 (view UCSC Genome Browser custom track)
Alignm length: 716
Alignm identity: 520
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 45

Conread position: 1-690
Cow position: chr1:76750947-76750236 (view UCSC Genome Browser custom track)
Alignm length: 726
Alignm identity: 528
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 20

Conread position: 1-690
Cow position: chr1:79455928-79455217 (view UCSC Genome Browser custom track)
Alignm length: 716
Alignm identity: 526
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 46

Conread position: 1-690
Cow position: chr1:80358150-80357434 (view UCSC Genome Browser custom track)
Alignm length: 723
Alignm identity: 527
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 140

Conread position: 1-690
Cow position: chr1:82653690-82654393 (view UCSC Genome Browser custom track)
Alignm length: 715
Alignm identity: 520
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 42

Conread position: 1-690
Cow position: chr1:85779420-85778719 (view UCSC Genome Browser custom track)
Alignm length: 709
Alignm identity: 517
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 43

Conread position: 1-690
Cow position: chr1:86547115-86546401 (view UCSC Genome Browser custom track)
Alignm length: 718
Alignm identity: 512
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 42

Conread position: 1-690
Cow position: chr1:91892092-91891385 (view UCSC Genome Browser custom track)
Alignm length: 717
Alignm identity: 522
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 45

Conread position: 1-690
Cow position: chr1:93855543-93856248 (view UCSC Genome Browser custom track)
Alignm length: 714
Alignm identity: 531
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 46

Conread position: 2-343
Cow position: chr1:89769688-89769334 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 0

Conread position: 2-415
Cow position: chr1:44544456-44544030 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 290
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 84, 33

Conread position: 2-444
Cow position: chr1:44972346-44972797 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 55

Conread position: 2-586
Cow position: chr1:5356154-5356759 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 41

Conread position: 2-587
Cow position: chr1:76703258-76702675 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 84

Conread position: 2-635
Cow position: chr1:99018982-99018346 (view UCSC Genome Browser custom track)
Alignm length: 650
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 72

Conread position: 2-641
Cow position: chr1:30063401-30064065 (view UCSC Genome Browser custom track)
Alignm length: 678
Alignm identity: 465
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 41

Conread position: 2-649
Cow position: chr1:53364584-53365231 (view UCSC Genome Browser custom track)
Alignm length: 678
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 43

Conread position: 2-678
Cow position: chr1:40683713-40683018 (view UCSC Genome Browser custom track)
Alignm length: 704
Alignm identity: 515
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 10

Conread position: 2-690
Cow position: chr1:24652303-24653000 (view UCSC Genome Browser custom track)
Alignm length: 703
Alignm identity: 540
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 150

Conread position: 2-690
Cow position: chr1:40511986-40511286 (view UCSC Genome Browser custom track)
Alignm length: 714
Alignm identity: 536
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 87

Conread position: 2-690
Cow position: chr1:55321046-55320347 (view UCSC Genome Browser custom track)
Alignm length: 718
Alignm identity: 524
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 42

Conread position: 2-690
Cow position: chr1:57657915-57658630 (view UCSC Genome Browser custom track)
Alignm length: 723
Alignm identity: 523
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 41

Conread position: 2-690
Cow position: chr1:63502853-63503517 (view UCSC Genome Browser custom track)
Alignm length: 702
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 42

Conread position: 2-690
Cow position: chr1:67834106-67833400 (view UCSC Genome Browser custom track)
Alignm length: 714
Alignm identity: 498
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 147

Conread position: 2-690
Cow position: chr1:73197996-73197302 (view UCSC Genome Browser custom track)
Alignm length: 714
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 41

Conread position: 3-653
Cow position: chr1:38419699-38420341 (view UCSC Genome Browser custom track)
Alignm length: 669
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 45

Conread position: 3-690
Cow position: chr1:102781268-102780606 (view UCSC Genome Browser custom track)
Alignm length: 697
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 44

Conread position: 4-690
Cow position: chr1:17011704-17011002 (view UCSC Genome Browser custom track)
Alignm length: 711
Alignm identity: 511
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 39

Conread position: 7-583
Cow position: chr1:72984532-72985101 (view UCSC Genome Browser custom track)
Alignm length: 595
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 9

Conread position: 7-690
Cow position: chr1:39882140-39882818 (view UCSC Genome Browser custom track)
Alignm length: 703
Alignm identity: 421
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 215, 50

Conread position: 9-277
Cow position: chr1:74285755-74285477 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 207
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 134, 35

Conread position: 9-463
Cow position: chr1:16581467-16581018 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 319
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 60, 104

Conread position: 9-463
Cow position: chr1:16587043-16586594 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 319
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 60, 104

Conread position: 9-678
Cow position: chr1:25550996-25551688 (view UCSC Genome Browser custom track)
Alignm length: 698
Alignm identity: 523
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 37

Conread position: 9-688
Cow position: chr1:65387354-65388046 (view UCSC Genome Browser custom track)
Alignm length: 705
Alignm identity: 519
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 38

Conread position: 9-689
Cow position: chr1:52358224-52357524 (view UCSC Genome Browser custom track)
Alignm length: 709
Alignm identity: 520
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 38

Conread position: 9-689
Cow position: chr1:94660708-94661404 (view UCSC Genome Browser custom track)
Alignm length: 702
Alignm identity: 520
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 38

Conread position: 9-690
Cow position: chr1:12061179-12060472 (view UCSC Genome Browser custom track)
Alignm length: 713
Alignm identity: 520
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 35

Conread position: 9-690
Cow position: chr1:28874115-28874803 (view UCSC Genome Browser custom track)
Alignm length: 696
Alignm identity: 512
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 38

Conread position: 9-690
Cow position: chr1:32566887-32566195 (view UCSC Genome Browser custom track)
Alignm length: 709
Alignm identity: 528
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 37

Conread position: 9-690
Cow position: chr1:42737492-42738165 (view UCSC Genome Browser custom track)
Alignm length: 697
Alignm identity: 505
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 38

Conread position: 9-690
Cow position: chr1:55777618-55778322 (view UCSC Genome Browser custom track)
Alignm length: 717
Alignm identity: 524
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 39

Conread position: 9-690
Cow position: chr1:62805145-62804440 (view UCSC Genome Browser custom track)
Alignm length: 709
Alignm identity: 530
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 378

Conread position: 9-690
Cow position: chr1:63604739-63604035 (view UCSC Genome Browser custom track)
Alignm length: 708
Alignm identity: 514
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 39

Conread position: 9-690
Cow position: chr1:73070024-73069324 (view UCSC Genome Browser custom track)
Alignm length: 715
Alignm identity: 514
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 12

Conread position: 9-690
Cow position: chr1:88131808-88132512 (view UCSC Genome Browser custom track)
Alignm length: 710
Alignm identity: 511
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 48

Conread position: 9-690
Cow position: chr1:99914460-99915171 (view UCSC Genome Browser custom track)
Alignm length: 720
Alignm identity: 540
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 38

Conread position: 9-690
Cow position: chr1:102434006-102433304 (view UCSC Genome Browser custom track)
Alignm length: 710
Alignm identity: 528
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 37

Conread position: 11-201
Cow position: chr1:76620647-76620455 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 141
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 47, 139

Conread position: 11-233
Cow position: chr1:18274228-18274451 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 154
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 105, 31

Conread position: 11-305
Cow position: chr1:31193684-31193396 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 209
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 140, 32

Conread position: 11-652
Cow position: chr1:43570379-43569742 (view UCSC Genome Browser custom track)
Alignm length: 673
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 33

Conread position: 12-492
Cow position: chr1:57663063-57663556 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 334
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 69, 29

Conread position: 16-690
Cow position: chr1:91900065-91900758 (view UCSC Genome Browser custom track)
Alignm length: 700
Alignm identity: 509
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 27

Conread position: 19-453
Cow position: chr1:81777478-81777924 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 28

Conread position: 19-690
Cow position: chr1:34693729-34694424 (view UCSC Genome Browser custom track)
Alignm length: 704
Alignm identity: 541
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 27

Conread position: 19-690
Cow position: chr1:47162583-47161893 (view UCSC Genome Browser custom track)
Alignm length: 706
Alignm identity: 477
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 26

Conread position: 20-388
Cow position: chr1:57569012-57569399 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 14

Conread position: 24-690
Cow position: chr1:40056152-40056840 (view UCSC Genome Browser custom track)
Alignm length: 693
Alignm identity: 505
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 5

Conread position: 31-690
Cow position: chr1:31417443-31416779 (view UCSC Genome Browser custom track)
Alignm length: 679
Alignm identity: 509
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 17

Conread position: 35-473
Cow position: chr1:89429930-89430383 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 95

Conread position: 42-690
Cow position: chr1:33897325-33897996 (view UCSC Genome Browser custom track)
Alignm length: 675
Alignm identity: 500
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 18

Conread position: 42-690
Cow position: chr1:89495155-89494495 (view UCSC Genome Browser custom track)
Alignm length: 683
Alignm identity: 482
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 89

Conread position: 46-690
Cow position: chr1:69767645-69768316 (view UCSC Genome Browser custom track)
Alignm length: 673
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 440

Conread position: 48-575
Cow position: chr1:89481917-89482437 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 77

Conread position: 48-690
Cow position: chr1:21088502-21089167 (view UCSC Genome Browser custom track)
Alignm length: 668
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 435

Conread position: 51-690
Cow position: chr1:17940699-17940034 (view UCSC Genome Browser custom track)
Alignm length: 668
Alignm identity: 493
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 86

Conread position: 66-690
Cow position: chr1:56724245-56724880 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 80

Conread position: 68-411
Cow position: chr1:58338051-58338421 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 267
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 27, 108

Conread position: 80-584
Cow position: chr1:41007803-41008287 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 325
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 45, 70

Conread position: 80-678
Cow position: chr1:24443256-24442637 (view UCSC Genome Browser custom track)
Alignm length: 624
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 71

Conread position: 85-689
Cow position: chr1:22905881-22906487 (view UCSC Genome Browser custom track)
Alignm length: 624
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 178

Conread position: 90-690
Cow position: chr1:4209319-4209944 (view UCSC Genome Browser custom track)
Alignm length: 627
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 394

Conread position: 100-559
Cow position: chr1:85668076-85667627 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 295
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 24, 30

Conread position: 117-690
Cow position: chr1:82923014-82922427 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 318

Conread position: 119-424
Cow position: chr1:11860102-11859783 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 18

Conread position: 119-489
Cow position: chr1:41782167-41781787 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 280
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 24, 106

Conread position: 124-528
Cow position: chr1:27178339-27177935 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 275
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 53, 13

Conread position: 137-338
Cow position: chr1:1829093-1828889 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 154
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 85, 162

Conread position: 152-516
Cow position: chr1:59934561-59934963 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 289
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 24, 60

Conread position: 153-652
Cow position: chr1:91529463-91528961 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 321
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 69, 11

Conread position: 153-690
Cow position: chr1:46836796-46837359 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 144

Conread position: 160-690
Cow position: chr1:81288316-81288871 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 324

Conread position: 165-690
Cow position: chr1:82477162-82477712 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 319

Conread position: 177-497
Cow position: chr1:3384743-3384418 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 201

Conread position: 186-551
Cow position: chr1:18193104-18193494 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 297

Conread position: 196-616
Cow position: chr1:93235931-93236353 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 22

Conread position: 199-690
Cow position: chr1:67909779-67910283 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 13

Conread position: 220-690
Cow position: chr1:77922958-77923444 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 255

Conread position: 228-690
Cow position: chr1:18240957-18240497 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 108

Conread position: 228-690
Cow position: chr1:76620202-76619743 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 63

Conread position: 231-690
Cow position: chr1:77462920-77463380 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 194

Conread position: 236-603
Cow position: chr1:7141371-7140993 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 261
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 75, 55

Conread position: 236-618
Cow position: chr1:80445418-80445815 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 238

Conread position: 237-422
Cow position: chr1:29608007-29607813 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 144
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 31, 24

Conread position: 241-690
Cow position: chr1:26584372-26584835 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 233

Conread position: 241-690
Cow position: chr1:81862708-81862250 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 191

Conread position: 255-690
Cow position: chr1:67002444-67002889 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 213

Conread position: 263-690
Cow position: chr1:59207781-59207343 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 102

Conread position: 265-688
Cow position: chr1:30074171-30074602 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 108

Conread position: 270-623
Cow position: chr1:5319691-5320042 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 21

Conread position: 270-690
Cow position: chr1:74285372-74284943 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 88

Conread position: 271-690
Cow position: chr1:71561443-71561009 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 203

Conread position: 272-690
Cow position: chr1:9379212-9378782 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 200

Conread position: 283-690
Cow position: chr1:34912291-34912709 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 169

Conread position: 287-655
Cow position: chr1:51978505-51978860 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 253
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 16, 56

Conread position: 287-690
Cow position: chr1:10723904-10724315 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 105

Conread position: 290-690
Cow position: chr1:50210517-50210106 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 180

Conread position: 291-598
Cow position: chr1:21998090-21997773 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 239
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 48, 163

Conread position: 298-677
Cow position: chr1:23091988-23092351 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 152

Conread position: 556-690
Cow position: chr1:101012582-101012448 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 117
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 561-690
Cow position: chr1:98617182-98617053 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 101
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.