Cow genome map

Conread name: Pig4-TMW8008H19

Conread position: 1-189
Cow position: chr10:34286307-34286494 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 134
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 173, 42

Conread position: 1-229
Cow position: chr10:3542019-3541798 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 173
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 170, 43

Conread position: 1-235
Cow position: chr10:31538839-31539069 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 155
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 47, 0

Conread position: 1-253
Cow position: chr10:21480983-21481240 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 195
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 133, 40

Conread position: 1-342
Cow position: chr10:27664215-27663867 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 42

Conread position: 1-343
Cow position: chr10:279558-279207 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 42

Conread position: 1-387
Cow position: chr10:66899319-66898935 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 263
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 176, 44

Conread position: 1-414
Cow position: chr10:8326270-8325885 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 300
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 174, 43

Conread position: 1-422
Cow position: chr10:38544869-38544449 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 42

Conread position: 1-453
Cow position: chr10:64145977-64146445 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 46

Conread position: 1-461
Cow position: chr10:42111472-42111946 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 44

Conread position: 1-495
Cow position: chr10:14862735-14863216 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 44

Conread position: 1-498
Cow position: chr10:11684595-11684065 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 494

Conread position: 1-500
Cow position: chr10:40151196-40150701 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 115

Conread position: 1-513
Cow position: chr10:1665485-1664955 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 42

Conread position: 1-542
Cow position: chr10:28642583-28643150 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 42

Conread position: 1-550
Cow position: chr10:14842831-14843376 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 40

Conread position: 1-617
Cow position: chr10:57501869-57502484 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 47

Conread position: 1-644
Cow position: chr10:17433401-17434076 (view UCSC Genome Browser custom track)
Alignm length: 686
Alignm identity: 483
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 47

Conread position: 1-644
Cow position: chr10:39180838-39181508 (view UCSC Genome Browser custom track)
Alignm length: 675
Alignm identity: 483
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 130

Conread position: 1-644
Cow position: chr10:47907980-47908648 (view UCSC Genome Browser custom track)
Alignm length: 671
Alignm identity: 483
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 129

Conread position: 1-649
Cow position: chr10:24311316-24310673 (view UCSC Genome Browser custom track)
Alignm length: 666
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 42

Conread position: 1-677
Cow position: chr10:11821802-11822493 (view UCSC Genome Browser custom track)
Alignm length: 712
Alignm identity: 493
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 74

Conread position: 1-678
Cow position: chr10:19840730-19841425 (view UCSC Genome Browser custom track)
Alignm length: 704
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 42

Conread position: 1-690
Cow position: chr10:1378556-1379254 (view UCSC Genome Browser custom track)
Alignm length: 707
Alignm identity: 531
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 46

Conread position: 1-690
Cow position: chr10:2119963-2119253 (view UCSC Genome Browser custom track)
Alignm length: 726
Alignm identity: 529
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 19

Conread position: 1-690
Cow position: chr10:7281041-7280347 (view UCSC Genome Browser custom track)
Alignm length: 716
Alignm identity: 530
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 44

Conread position: 1-690
Cow position: chr10:14334799-14334088 (view UCSC Genome Browser custom track)
Alignm length: 726
Alignm identity: 528
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 43

Conread position: 1-690
Cow position: chr10:14804893-14805604 (view UCSC Genome Browser custom track)
Alignm length: 716
Alignm identity: 523
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 42

Conread position: 1-690
Cow position: chr10:19495231-19494529 (view UCSC Genome Browser custom track)
Alignm length: 717
Alignm identity: 517
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 42

Conread position: 1-690
Cow position: chr10:21078692-21079370 (view UCSC Genome Browser custom track)
Alignm length: 707
Alignm identity: 462
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 42

Conread position: 1-690
Cow position: chr10:21739700-21738998 (view UCSC Genome Browser custom track)
Alignm length: 710
Alignm identity: 506
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 42

Conread position: 1-690
Cow position: chr10:28256367-28255650 (view UCSC Genome Browser custom track)
Alignm length: 724
Alignm identity: 516
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 42

Conread position: 1-690
Cow position: chr10:29845598-29844901 (view UCSC Genome Browser custom track)
Alignm length: 708
Alignm identity: 528
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 46

Conread position: 1-690
Cow position: chr10:39040258-39039558 (view UCSC Genome Browser custom track)
Alignm length: 722
Alignm identity: 508
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 164

Conread position: 1-690
Cow position: chr10:40641009-40641702 (view UCSC Genome Browser custom track)
Alignm length: 718
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 41

Conread position: 1-690
Cow position: chr10:41158497-41159171 (view UCSC Genome Browser custom track)
Alignm length: 698
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 113

Conread position: 1-690
Cow position: chr10:41568149-41568859 (view UCSC Genome Browser custom track)
Alignm length: 716
Alignm identity: 525
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 42

Conread position: 1-690
Cow position: chr10:41877967-41878682 (view UCSC Genome Browser custom track)
Alignm length: 718
Alignm identity: 528
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 271

Conread position: 1-690
Cow position: chr10:44708566-44707859 (view UCSC Genome Browser custom track)
Alignm length: 718
Alignm identity: 522
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 108

Conread position: 1-690
Cow position: chr10:55094316-55095022 (view UCSC Genome Browser custom track)
Alignm length: 713
Alignm identity: 523
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 42

Conread position: 1-690
Cow position: chr10:57556290-57555577 (view UCSC Genome Browser custom track)
Alignm length: 716
Alignm identity: 515
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 42

Conread position: 1-690
Cow position: chr10:57988947-57988238 (view UCSC Genome Browser custom track)
Alignm length: 717
Alignm identity: 536
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 48

Conread position: 1-690
Cow position: chr10:62407732-62407024 (view UCSC Genome Browser custom track)
Alignm length: 717
Alignm identity: 524
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 46

Conread position: 2-510
Cow position: chr10:36469398-36468891 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 39

Conread position: 2-524
Cow position: chr10:51782361-51781824 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 58

Conread position: 2-548
Cow position: chr10:29110095-29109542 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 353
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 22, 27

Conread position: 2-640
Cow position: chr10:23138346-23138961 (view UCSC Genome Browser custom track)
Alignm length: 656
Alignm identity: 409
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 137, 36

Conread position: 2-649
Cow position: chr10:60360940-60361598 (view UCSC Genome Browser custom track)
Alignm length: 673
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 174

Conread position: 2-690
Cow position: chr10:20370027-20369350 (view UCSC Genome Browser custom track)
Alignm length: 704
Alignm identity: 511
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 41

Conread position: 2-690
Cow position: chr10:39779070-39778373 (view UCSC Genome Browser custom track)
Alignm length: 713
Alignm identity: 536
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 162

Conread position: 9-316
Cow position: chr10:38537443-38537124 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 39

Conread position: 9-369
Cow position: chr10:16926586-16926966 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 39

Conread position: 9-415
Cow position: chr10:32701782-32702207 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 39

Conread position: 9-497
Cow position: chr10:19512648-19513142 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 35

Conread position: 9-540
Cow position: chr10:50135624-50136172 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 38

Conread position: 9-649
Cow position: chr10:29011601-29010952 (view UCSC Genome Browser custom track)
Alignm length: 661
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 55

Conread position: 9-689
Cow position: chr10:32558406-32559100 (view UCSC Genome Browser custom track)
Alignm length: 712
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 36

Conread position: 9-690
Cow position: chr10:38344302-38343610 (view UCSC Genome Browser custom track)
Alignm length: 707
Alignm identity: 521
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 38

Conread position: 10-543
Cow position: chr10:20375777-20375234 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 37

Conread position: 11-690
Cow position: chr10:22102297-22102991 (view UCSC Genome Browser custom track)
Alignm length: 714
Alignm identity: 522
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 74

Conread position: 12-630
Cow position: chr10:53321334-53320705 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 33

Conread position: 13-643
Cow position: chr10:58812691-58812053 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 30

Conread position: 19-214
Cow position: chr10:28928900-28928704 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 152
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 34, 143

Conread position: 20-599
Cow position: chr10:55285014-55285609 (view UCSC Genome Browser custom track)
Alignm length: 615
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 141

Conread position: 20-690
Cow position: chr10:30684427-30683733 (view UCSC Genome Browser custom track)
Alignm length: 699
Alignm identity: 525
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 27

Conread position: 23-690
Cow position: chr10:7897414-7896723 (view UCSC Genome Browser custom track)
Alignm length: 695
Alignm identity: 506
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 20

Conread position: 24-387
Cow position: chr10:33870153-33870529 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 228
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 155, 5

Conread position: 25-393
Cow position: chr10:42749898-42750258 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 262
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 152, 20

Conread position: 25-556
Cow position: chr10:58597443-58597974 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 20

Conread position: 48-690
Cow position: chr10:39815306-39814641 (view UCSC Genome Browser custom track)
Alignm length: 669
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 83

Conread position: 49-690
Cow position: chr10:48398004-48397356 (view UCSC Genome Browser custom track)
Alignm length: 665
Alignm identity: 453
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 117

Conread position: 52-690
Cow position: chr10:21488063-21488714 (view UCSC Genome Browser custom track)
Alignm length: 659
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 14

Conread position: 56-676
Cow position: chr10:38849390-38850011 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 462
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 235

Conread position: 57-690
Cow position: chr10:29631699-29631037 (view UCSC Genome Browser custom track)
Alignm length: 670
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 416

Conread position: 61-498
Cow position: chr10:126392-126848 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 379

Conread position: 64-300
Cow position: chr10:50313022-50313265 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 172
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 82, 86

Conread position: 65-478
Cow position: chr10:37491552-37491126 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 289
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 157, 63

Conread position: 67-690
Cow position: chr10:37770997-37771642 (view UCSC Genome Browser custom track)
Alignm length: 652
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 17

Conread position: 71-690
Cow position: chr10:10583231-10583879 (view UCSC Genome Browser custom track)
Alignm length: 652
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 57

Conread position: 80-314
Cow position: chr10:46192192-46192432 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 176
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 95, 12

Conread position: 80-690
Cow position: chr10:16477897-16478498 (view UCSC Genome Browser custom track)
Alignm length: 626
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 57

Conread position: 81-659
Cow position: chr10:39878304-39877697 (view UCSC Genome Browser custom track)
Alignm length: 614
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 107

Conread position: 83-636
Cow position: chr10:20382882-20382331 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 21

Conread position: 95-689
Cow position: chr10:6662471-6661903 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 375
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 44, 22

Conread position: 108-690
Cow position: chr10:54931043-54930457 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 466
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 18

Conread position: 117-447
Cow position: chr10:51774045-51773702 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 251
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 60, 162

Conread position: 131-690
Cow position: chr10:55024764-55025335 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 17

Conread position: 177-690
Cow position: chr10:31524990-31525486 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 168

Conread position: 200-676
Cow position: chr10:47787945-47788418 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 21

Conread position: 204-452
Cow position: chr10:6538635-6538912 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 201
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 14, 0

Conread position: 223-686
Cow position: chr10:29109691-29109232 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 5

Conread position: 223-690
Cow position: chr10:33870562-33871043 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 5

Conread position: 227-685
Cow position: chr10:25652149-25651676 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 247

Conread position: 228-459
Cow position: chr10:21898805-21898578 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 166
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 124, 22

Conread position: 231-690
Cow position: chr10:41774322-41773859 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 318
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 57, 167

Conread position: 237-690
Cow position: chr10:68160346-68159880 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 153

Conread position: 272-690
Cow position: chr10:10172059-10172493 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 203

Conread position: 287-677
Cow position: chr10:46196416-46196786 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 27

Conread position: 287-690
Cow position: chr10:8291390-8291801 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 178

Conread position: 299-649
Cow position: chr10:21517610-21517275 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 53

Show alignments to all cow chromosomes.