Cow genome map

Conread name: Pig4-TMW8008H19

Conread position: 1-169
Cow position: chr14:23257983-23258152 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 126
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 57, 41

Conread position: 1-169
Cow position: chr14:36260603-36260447 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 126
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 54, 94

Conread position: 1-186
Cow position: chr14:15275603-15275419 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 141
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 142, 43

Conread position: 1-186
Cow position: chr14:17686029-17686213 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 141
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 173, 43

Conread position: 1-272
Cow position: chr14:37413115-37412840 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 205
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 214, 58

Conread position: 1-277
Cow position: chr14:38530829-38530544 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 212
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 131, 46

Conread position: 1-277
Cow position: chr14:47642339-47642620 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 197
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 40, 162

Conread position: 1-325
Cow position: chr14:2284968-2285294 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 232
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 173, 106

Conread position: 1-352
Cow position: chr14:12742437-12742070 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 45

Conread position: 1-370
Cow position: chr14:12899725-12900111 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 169

Conread position: 1-399
Cow position: chr14:13620521-13620097 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 419

Conread position: 1-414
Cow position: chr14:33393157-33392738 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 248
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 166, 42

Conread position: 1-429
Cow position: chr14:37224821-37225277 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 46

Conread position: 1-498
Cow position: chr14:30705697-30705160 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 191

Conread position: 1-498
Cow position: chr14:45081680-45082200 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 478

Conread position: 1-498
Cow position: chr14:46391903-46391395 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 281

Conread position: 1-505
Cow position: chr14:9514653-9514147 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 152

Conread position: 1-549
Cow position: chr14:13323049-13322471 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 127

Conread position: 1-550
Cow position: chr14:44775407-44774851 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 46

Conread position: 1-554
Cow position: chr14:17490829-17490257 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 304
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 47, 72

Conread position: 1-565
Cow position: chr14:30666130-30666682 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 128

Conread position: 1-571
Cow position: chr14:50111419-50112025 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 131

Conread position: 1-598
Cow position: chr14:50139192-50139816 (view UCSC Genome Browser custom track)
Alignm length: 630
Alignm identity: 453
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 42

Conread position: 1-599
Cow position: chr14:16272666-16272046 (view UCSC Genome Browser custom track)
Alignm length: 624
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 178

Conread position: 1-614
Cow position: chr14:13274230-13274870 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 154

Conread position: 1-658
Cow position: chr14:33402315-33402988 (view UCSC Genome Browser custom track)
Alignm length: 687
Alignm identity: 496
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 152

Conread position: 1-678
Cow position: chr14:45206942-45207608 (view UCSC Genome Browser custom track)
Alignm length: 686
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 20

Conread position: 1-689
Cow position: chr14:29047057-29046333 (view UCSC Genome Browser custom track)
Alignm length: 725
Alignm identity: 510
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 0

Conread position: 1-690
Cow position: chr14:751196-751905 (view UCSC Genome Browser custom track)
Alignm length: 716
Alignm identity: 505
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 42

Conread position: 1-690
Cow position: chr14:5529701-5530398 (view UCSC Genome Browser custom track)
Alignm length: 714
Alignm identity: 517
Alignm E-value: 0
Alignm gaps (pig, cow): 219, 143

Conread position: 1-690
Cow position: chr14:13303601-13304293 (view UCSC Genome Browser custom track)
Alignm length: 712
Alignm identity: 520
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 43

Conread position: 1-690
Cow position: chr14:13779569-13780292 (view UCSC Genome Browser custom track)
Alignm length: 729
Alignm identity: 539
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 45

Conread position: 1-690
Cow position: chr14:13863467-13862758 (view UCSC Genome Browser custom track)
Alignm length: 717
Alignm identity: 540
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 168

Conread position: 1-690
Cow position: chr14:16919087-16918381 (view UCSC Genome Browser custom track)
Alignm length: 717
Alignm identity: 532
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 46

Conread position: 1-690
Cow position: chr14:22030816-22030109 (view UCSC Genome Browser custom track)
Alignm length: 716
Alignm identity: 520
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 47

Conread position: 1-690
Cow position: chr14:27977991-27978696 (view UCSC Genome Browser custom track)
Alignm length: 714
Alignm identity: 525
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 42

Conread position: 1-690
Cow position: chr14:38147639-38148329 (view UCSC Genome Browser custom track)
Alignm length: 711
Alignm identity: 511
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 42

Conread position: 1-690
Cow position: chr14:43558865-43559578 (view UCSC Genome Browser custom track)
Alignm length: 718
Alignm identity: 541
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 42

Conread position: 1-690
Cow position: chr14:45671417-45670695 (view UCSC Genome Browser custom track)
Alignm length: 726
Alignm identity: 519
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 42

Conread position: 1-690
Cow position: chr14:45711090-45710399 (view UCSC Genome Browser custom track)
Alignm length: 708
Alignm identity: 532
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 20

Conread position: 1-690
Cow position: chr14:48253681-48252988 (view UCSC Genome Browser custom track)
Alignm length: 716
Alignm identity: 512
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 45

Conread position: 1-690
Cow position: chr14:48601711-48601010 (view UCSC Genome Browser custom track)
Alignm length: 717
Alignm identity: 520
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 200

Conread position: 2-408
Cow position: chr14:39722312-39721914 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 277
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 40, 80

Conread position: 2-409
Cow position: chr14:46637196-46637604 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 41

Conread position: 2-567
Cow position: chr14:44581984-44582583 (view UCSC Genome Browser custom track)
Alignm length: 613
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 122

Conread position: 2-644
Cow position: chr14:10147504-10148169 (view UCSC Genome Browser custom track)
Alignm length: 669
Alignm identity: 483
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 41

Conread position: 2-678
Cow position: chr14:9046206-9046908 (view UCSC Genome Browser custom track)
Alignm length: 704
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 41

Conread position: 2-678
Cow position: chr14:17760249-17759568 (view UCSC Genome Browser custom track)
Alignm length: 696
Alignm identity: 529
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 36

Conread position: 2-690
Cow position: chr14:7472988-7473692 (view UCSC Genome Browser custom track)
Alignm length: 718
Alignm identity: 519
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 98

Conread position: 2-690
Cow position: chr14:45028361-45027662 (view UCSC Genome Browser custom track)
Alignm length: 717
Alignm identity: 522
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 41

Conread position: 2-690
Cow position: chr14:48825917-48826615 (view UCSC Genome Browser custom track)
Alignm length: 706
Alignm identity: 523
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 41

Conread position: 3-690
Cow position: chr14:43555600-43556322 (view UCSC Genome Browser custom track)
Alignm length: 729
Alignm identity: 509
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 40

Conread position: 4-326
Cow position: chr14:35365625-35365305 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 223
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 173, 43

Conread position: 7-690
Cow position: chr14:11153522-11152812 (view UCSC Genome Browser custom track)
Alignm length: 717
Alignm identity: 535
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 40

Conread position: 7-690
Cow position: chr14:20783095-20783808 (view UCSC Genome Browser custom track)
Alignm length: 729
Alignm identity: 541
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 31

Conread position: 9-336
Cow position: chr14:32447431-32447762 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 37

Conread position: 9-628
Cow position: chr14:45678439-45677809 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 34

Conread position: 9-690
Cow position: chr14:19327629-19326922 (view UCSC Genome Browser custom track)
Alignm length: 709
Alignm identity: 524
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 470

Conread position: 11-690
Cow position: chr14:17000419-16999717 (view UCSC Genome Browser custom track)
Alignm length: 707
Alignm identity: 537
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 36

Conread position: 16-496
Cow position: chr14:40169075-40168596 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 59

Conread position: 19-690
Cow position: chr14:21744753-21745418 (view UCSC Genome Browser custom track)
Alignm length: 694
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 38

Conread position: 20-675
Cow position: chr14:10520846-10520198 (view UCSC Genome Browser custom track)
Alignm length: 675
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 23

Conread position: 20-676
Cow position: chr14:24996934-24996291 (view UCSC Genome Browser custom track)
Alignm length: 678
Alignm identity: 467
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 121

Conread position: 24-423
Cow position: chr14:16343167-16342771 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 247
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 126, 5

Conread position: 25-690
Cow position: chr14:30595719-30595014 (view UCSC Genome Browser custom track)
Alignm length: 711
Alignm identity: 514
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 332

Conread position: 27-555
Cow position: chr14:40341707-40342262 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 181

Conread position: 27-690
Cow position: chr14:1659111-1659795 (view UCSC Genome Browser custom track)
Alignm length: 689
Alignm identity: 497
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 16

Conread position: 36-690
Cow position: chr14:44256102-44255441 (view UCSC Genome Browser custom track)
Alignm length: 685
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 305

Conread position: 38-677
Cow position: chr14:12611098-12611737 (view UCSC Genome Browser custom track)
Alignm length: 657
Alignm identity: 497
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 52

Conread position: 39-690
Cow position: chr14:46466358-46466997 (view UCSC Genome Browser custom track)
Alignm length: 669
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 68

Conread position: 47-677
Cow position: chr14:2294963-2295596 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 460
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 83

Conread position: 48-690
Cow position: chr14:18105126-18105762 (view UCSC Genome Browser custom track)
Alignm length: 658
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 22

Conread position: 60-625
Cow position: chr14:44227063-44227652 (view UCSC Genome Browser custom track)
Alignm length: 595
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 94

Conread position: 69-652
Cow position: chr14:27990898-27990326 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 158

Conread position: 80-648
Cow position: chr14:33798182-33798772 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 376
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 43, 63

Conread position: 80-686
Cow position: chr14:44552560-44553171 (view UCSC Genome Browser custom track)
Alignm length: 618
Alignm identity: 467
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 11

Conread position: 95-437
Cow position: chr14:13462243-13462607 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 42

Conread position: 98-690
Cow position: chr14:29775357-29774781 (view UCSC Genome Browser custom track)
Alignm length: 613
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 264

Conread position: 117-690
Cow position: chr14:5513681-5514268 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 184

Conread position: 118-290
Cow position: chr14:45162774-45162954 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 139
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 58, 140

Conread position: 119-690
Cow position: chr14:12124438-12123842 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 365

Conread position: 149-543
Cow position: chr14:35385039-35384636 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 158

Conread position: 176-690
Cow position: chr14:23256551-23256021 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 307

Conread position: 177-452
Cow position: chr14:34861272-34861548 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 201
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 44, 72

Conread position: 177-690
Cow position: chr14:15275045-15274499 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 316

Conread position: 177-690
Cow position: chr14:17687309-17687836 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 106

Conread position: 178-673
Cow position: chr14:37455107-37454624 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 86

Conread position: 178-690
Cow position: chr14:45086047-45086560 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 272

Conread position: 181-690
Cow position: chr14:190852-191385 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 215

Conread position: 186-690
Cow position: chr14:13579207-13579705 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 135

Conread position: 198-676
Cow position: chr14:45188959-45188479 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 30

Conread position: 228-498
Cow position: chr14:44292077-44292354 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 202
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 44, 35

Conread position: 228-587
Cow position: chr14:25365623-25365255 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 27

Conread position: 228-677
Cow position: chr14:25692814-25693273 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 73

Conread position: 228-690
Cow position: chr14:32447827-32448294 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 233

Conread position: 228-690
Cow position: chr14:44289932-44290404 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 35

Conread position: 240-451
Cow position: chr14:28244795-28244576 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 170
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 55, 0

Conread position: 264-498
Cow position: chr14:31882358-31882604 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 184
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 25, 210

Conread position: 277-546
Cow position: chr14:45163167-45163445 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 208
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 21, 159

Conread position: 400-690
Cow position: chr14:11476240-11475952 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 68

Conread position: 580-690
Cow position: chr14:50142206-50142316 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 91
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.