Cow genome map

Conread name: Pig4-TMW8008H19

Conread position: 1-229
Cow position: chr16:29090006-29089778 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 167
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 103, 41

Conread position: 1-231
Cow position: chr16:19151333-19151098 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 179
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 56, 88

Conread position: 1-249
Cow position: chr16:10968044-10967803 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 182
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 64, 44

Conread position: 1-296
Cow position: chr16:41162783-41162481 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 209
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 63, 42

Conread position: 1-310
Cow position: chr16:1860508-1860819 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 56

Conread position: 1-369
Cow position: chr16:56916776-56916399 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 56

Conread position: 1-411
Cow position: chr16:49234342-49233918 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 45

Conread position: 1-489
Cow position: chr16:26105774-26105256 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 43

Conread position: 1-493
Cow position: chr16:25188937-25189441 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 42

Conread position: 1-494
Cow position: chr16:21185903-21186417 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 42

Conread position: 1-505
Cow position: chr16:15477130-15477655 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 46

Conread position: 1-562
Cow position: chr16:26664039-26664620 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 198

Conread position: 1-573
Cow position: chr16:31591630-31591040 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 41

Conread position: 1-641
Cow position: chr16:49255947-49255286 (view UCSC Genome Browser custom track)
Alignm length: 679
Alignm identity: 508
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 163

Conread position: 1-644
Cow position: chr16:10565469-10564833 (view UCSC Genome Browser custom track)
Alignm length: 663
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 341, 24

Conread position: 1-657
Cow position: chr16:56119959-56120619 (view UCSC Genome Browser custom track)
Alignm length: 681
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 44

Conread position: 1-677
Cow position: chr16:18497999-18497333 (view UCSC Genome Browser custom track)
Alignm length: 689
Alignm identity: 496
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 135

Conread position: 1-677
Cow position: chr16:25171638-25172332 (view UCSC Genome Browser custom track)
Alignm length: 713
Alignm identity: 477
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 43

Conread position: 1-678
Cow position: chr16:837602-838301 (view UCSC Genome Browser custom track)
Alignm length: 705
Alignm identity: 518
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 177

Conread position: 1-685
Cow position: chr16:28170075-28169331 (view UCSC Genome Browser custom track)
Alignm length: 745
Alignm identity: 512
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 0

Conread position: 1-686
Cow position: chr16:16270851-16270144 (view UCSC Genome Browser custom track)
Alignm length: 719
Alignm identity: 536
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 56

Conread position: 1-690
Cow position: chr16:1567164-1566466 (view UCSC Genome Browser custom track)
Alignm length: 716
Alignm identity: 536
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 46

Conread position: 1-690
Cow position: chr16:2482850-2482140 (view UCSC Genome Browser custom track)
Alignm length: 717
Alignm identity: 529
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 173

Conread position: 1-690
Cow position: chr16:3088913-3088208 (view UCSC Genome Browser custom track)
Alignm length: 715
Alignm identity: 516
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 42

Conread position: 1-690
Cow position: chr16:3330225-3330925 (view UCSC Genome Browser custom track)
Alignm length: 710
Alignm identity: 534
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 47

Conread position: 1-690
Cow position: chr16:5662131-5662835 (view UCSC Genome Browser custom track)
Alignm length: 722
Alignm identity: 521
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 86

Conread position: 1-690
Cow position: chr16:8815817-8815112 (view UCSC Genome Browser custom track)
Alignm length: 717
Alignm identity: 539
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 47

Conread position: 1-690
Cow position: chr16:10375311-10374606 (view UCSC Genome Browser custom track)
Alignm length: 715
Alignm identity: 512
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 42

Conread position: 1-690
Cow position: chr16:12537638-12536956 (view UCSC Genome Browser custom track)
Alignm length: 708
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 338, 46

Conread position: 1-690
Cow position: chr16:14665521-14664817 (view UCSC Genome Browser custom track)
Alignm length: 717
Alignm identity: 527
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 67

Conread position: 1-690
Cow position: chr16:15185361-15186075 (view UCSC Genome Browser custom track)
Alignm length: 719
Alignm identity: 534
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 45

Conread position: 1-690
Cow position: chr16:23983586-23984295 (view UCSC Genome Browser custom track)
Alignm length: 721
Alignm identity: 535
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 44

Conread position: 1-690
Cow position: chr16:25342258-25342967 (view UCSC Genome Browser custom track)
Alignm length: 726
Alignm identity: 532
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 46

Conread position: 1-690
Cow position: chr16:27593795-27594503 (view UCSC Genome Browser custom track)
Alignm length: 716
Alignm identity: 520
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 42

Conread position: 1-690
Cow position: chr16:28470812-28470066 (view UCSC Genome Browser custom track)
Alignm length: 752
Alignm identity: 542
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 46

Conread position: 1-690
Cow position: chr16:40295888-40295171 (view UCSC Genome Browser custom track)
Alignm length: 728
Alignm identity: 542
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 74

Conread position: 1-690
Cow position: chr16:43896987-43896266 (view UCSC Genome Browser custom track)
Alignm length: 727
Alignm identity: 531
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 47

Conread position: 2-293
Cow position: chr16:2410676-2410380 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 42

Conread position: 2-311
Cow position: chr16:37480848-37480532 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 41

Conread position: 2-556
Cow position: chr16:16014837-16014304 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 350
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 220, 44

Conread position: 2-600
Cow position: chr16:406749-406131 (view UCSC Genome Browser custom track)
Alignm length: 623
Alignm identity: 466
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 45

Conread position: 2-690
Cow position: chr16:10438542-10439254 (view UCSC Genome Browser custom track)
Alignm length: 718
Alignm identity: 525
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 42

Conread position: 2-690
Cow position: chr16:15567544-15568253 (view UCSC Genome Browser custom track)
Alignm length: 716
Alignm identity: 518
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 46

Conread position: 2-690
Cow position: chr16:27786331-27787041 (view UCSC Genome Browser custom track)
Alignm length: 720
Alignm identity: 444
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 141, 56

Conread position: 3-505
Cow position: chr16:37455729-37455202 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 44

Conread position: 4-166
Cow position: chr16:51405659-51405503 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 125
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 40, 0

Conread position: 7-411
Cow position: chr16:23801821-23801405 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 278
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 95, 31

Conread position: 7-541
Cow position: chr16:23252140-23251577 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 39

Conread position: 7-689
Cow position: chr16:23535596-23534906 (view UCSC Genome Browser custom track)
Alignm length: 703
Alignm identity: 516
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 40

Conread position: 7-690
Cow position: chr16:49221588-49220921 (view UCSC Genome Browser custom track)
Alignm length: 696
Alignm identity: 509
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 126

Conread position: 9-231
Cow position: chr16:7464124-7464347 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 164
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 73, 38

Conread position: 9-286
Cow position: chr16:15493800-15494085 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 208
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 169, 38

Conread position: 9-487
Cow position: chr16:27714504-27714033 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 38

Conread position: 9-564
Cow position: chr16:4478686-4478097 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 0

Conread position: 9-677
Cow position: chr16:337463-338165 (view UCSC Genome Browser custom track)
Alignm length: 715
Alignm identity: 516
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 39

Conread position: 9-689
Cow position: chr16:5485028-5485718 (view UCSC Genome Browser custom track)
Alignm length: 700
Alignm identity: 506
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 37

Conread position: 9-690
Cow position: chr16:25441925-25442625 (view UCSC Genome Browser custom track)
Alignm length: 707
Alignm identity: 537
Alignm E-value: 0
Alignm gaps (pig, cow): 207, 165

Conread position: 9-690
Cow position: chr16:25457165-25456485 (view UCSC Genome Browser custom track)
Alignm length: 703
Alignm identity: 521
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 38

Conread position: 9-690
Cow position: chr16:51084436-51085153 (view UCSC Genome Browser custom track)
Alignm length: 721
Alignm identity: 519
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 128

Conread position: 10-676
Cow position: chr16:16897758-16898435 (view UCSC Genome Browser custom track)
Alignm length: 695
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 28

Conread position: 10-690
Cow position: chr16:25085910-25086607 (view UCSC Genome Browser custom track)
Alignm length: 706
Alignm identity: 533
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 33

Conread position: 11-689
Cow position: chr16:7676158-7675463 (view UCSC Genome Browser custom track)
Alignm length: 709
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 35

Conread position: 11-690
Cow position: chr16:12668468-12667783 (view UCSC Genome Browser custom track)
Alignm length: 704
Alignm identity: 456
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 27

Conread position: 12-343
Cow position: chr16:42736103-42735761 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 286

Conread position: 19-672
Cow position: chr16:1432498-1433165 (view UCSC Genome Browser custom track)
Alignm length: 676
Alignm identity: 494
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 22

Conread position: 19-690
Cow position: chr16:29047324-29048018 (view UCSC Genome Browser custom track)
Alignm length: 700
Alignm identity: 514
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 191

Conread position: 20-674
Cow position: chr16:26978447-26979092 (view UCSC Genome Browser custom track)
Alignm length: 667
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 27

Conread position: 21-671
Cow position: chr16:41166336-41165695 (view UCSC Genome Browser custom track)
Alignm length: 662
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 25

Conread position: 24-690
Cow position: chr16:28196932-28196245 (view UCSC Genome Browser custom track)
Alignm length: 693
Alignm identity: 500
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 5

Conread position: 27-690
Cow position: chr16:23671011-23671694 (view UCSC Genome Browser custom track)
Alignm length: 696
Alignm identity: 505
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 21

Conread position: 43-690
Cow position: chr16:20202327-20202971 (view UCSC Genome Browser custom track)
Alignm length: 674
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 87

Conread position: 44-460
Cow position: chr16:11283921-11284360 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 0

Conread position: 47-497
Cow position: chr16:23808668-23809122 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 16

Conread position: 48-343
Cow position: chr16:29034396-29034688 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 188

Conread position: 48-678
Cow position: chr16:5890331-5890985 (view UCSC Genome Browser custom track)
Alignm length: 660
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 17

Conread position: 54-589
Cow position: chr16:30071783-30072307 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 342
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 68, 16

Conread position: 75-677
Cow position: chr16:47474609-47475226 (view UCSC Genome Browser custom track)
Alignm length: 632
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 232

Conread position: 80-494
Cow position: chr16:19638426-19638852 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 221

Conread position: 94-690
Cow position: chr16:2238381-2237775 (view UCSC Genome Browser custom track)
Alignm length: 617
Alignm identity: 460
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 151

Conread position: 94-690
Cow position: chr16:2726850-2726219 (view UCSC Genome Browser custom track)
Alignm length: 636
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 330

Conread position: 117-690
Cow position: chr16:27732978-27732386 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 15

Conread position: 121-678
Cow position: chr16:25001892-25001310 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 16

Conread position: 124-690
Cow position: chr16:54324925-54324339 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 5

Conread position: 138-690
Cow position: chr16:19779228-19778656 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 54

Conread position: 160-492
Cow position: chr16:38023768-38024119 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 236
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 28, 349

Conread position: 166-335
Cow position: chr16:49168648-49168472 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 136
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 8, 33

Conread position: 174-677
Cow position: chr16:16520294-16519788 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 21

Conread position: 181-686
Cow position: chr16:51403416-51402884 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 308

Conread position: 198-583
Cow position: chr16:39366413-39366023 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 270
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 147, 30

Conread position: 220-543
Cow position: chr16:19080481-19080819 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 254

Conread position: 223-421
Cow position: chr16:3918584-3918793 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 157
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 66, 5

Conread position: 223-690
Cow position: chr16:33047-33521 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 5

Conread position: 227-642
Cow position: chr16:27823703-27823300 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 280
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 79, 40

Conread position: 228-553
Cow position: chr16:41562612-41562942 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 235
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 67, 27

Conread position: 228-690
Cow position: chr16:25258348-25258799 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 27

Conread position: 234-690
Cow position: chr16:9931272-9931728 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 63

Conread position: 238-690
Cow position: chr16:40557412-40556949 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 134

Conread position: 242-689
Cow position: chr16:41685708-41685260 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 20

Conread position: 244-553
Cow position: chr16:7464854-7465176 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 38

Conread position: 261-690
Cow position: chr16:1960056-1959626 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 208

Conread position: 282-437
Cow position: chr16:10582094-10582255 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 118
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 25, 0

Conread position: 287-677
Cow position: chr16:5871475-5871870 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 59

Conread position: 288-690
Cow position: chr16:2410351-2409938 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 278

Conread position: 301-690
Cow position: chr16:5527789-5527390 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 169

Conread position: 305-690
Cow position: chr16:37480257-37479860 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 171

Conread position: 312-690
Cow position: chr16:28158165-28158563 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 243

Conread position: 550-690
Cow position: chr16:4474751-4474610 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 113
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 5, 0

Show alignments to all cow chromosomes.