Cow genome map
| Conread name: | Pig4-TMW8008H19 |
| Conread position: | 1-172 |
| Cow position: | chr21:5018258-5018431 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-305 |
| Cow position: | chr21:1192905-1193214 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 45 |
| Conread position: | 1-324 |
| Cow position: | chr21:26402340-26402010 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 238 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 136, 43 |
| Conread position: | 1-336 |
| Cow position: | chr21:29625596-29625227 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 105, 42 |
| Conread position: | 1-343 |
| Cow position: | chr21:34001531-34001187 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 252 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 96, 42 |
| Conread position: | 1-392 |
| Cow position: | chr21:11452398-11451994 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 283 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 178, 42 |
| Conread position: | 1-405 |
| Cow position: | chr21:18817404-18816993 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 200 |
| Conread position: | 1-407 |
| Cow position: | chr21:7063660-7064074 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 290 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 178, 42 |
| Conread position: | 1-412 |
| Cow position: | chr21:40683298-40682868 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 42 |
| Conread position: | 1-419 |
| Cow position: | chr21:27036253-27035815 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 42 |
| Conread position: | 1-433 |
| Cow position: | chr21:5840116-5839661 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 45 |
| Conread position: | 1-452 |
| Cow position: | chr21:4716164-4716636 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 321 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 154, 56 |
| Conread position: | 1-540 |
| Cow position: | chr21:45786284-45785748 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 38 |
| Conread position: | 1-589 |
| Cow position: | chr21:12054860-12054262 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 42 |
| Conread position: | 1-589 |
| Cow position: | chr21:45782629-45783225 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 63 |
| Conread position: | 1-597 |
| Cow position: | chr21:37149183-37149759 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 100 |
| Conread position: | 1-615 |
| Cow position: | chr21:34823066-34822429 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 42 |
| Conread position: | 1-658 |
| Cow position: | chr21:27284600-27285283 (view UCSC Genome Browser custom track) |
| Alignm length: | 697 |
| Alignm identity: | 502 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 160 |
| Conread position: | 1-677 |
| Cow position: | chr21:26849874-26849186 (view UCSC Genome Browser custom track) |
| Alignm length: | 699 |
| Alignm identity: | 492 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 476 |
| Conread position: | 1-678 |
| Cow position: | chr21:30225-30884 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 500 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 47 |
| Conread position: | 1-678 |
| Cow position: | chr21:1287070-1286371 (view UCSC Genome Browser custom track) |
| Alignm length: | 708 |
| Alignm identity: | 513 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 148 |
| Conread position: | 1-686 |
| Cow position: | chr21:360791-361524 (view UCSC Genome Browser custom track) |
| Alignm length: | 743 |
| Alignm identity: | 525 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 226 |
| Conread position: | 1-690 |
| Cow position: | chr21:2511990-2512705 (view UCSC Genome Browser custom track) |
| Alignm length: | 720 |
| Alignm identity: | 531 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 42 |
| Conread position: | 1-690 |
| Cow position: | chr21:3779915-3780629 (view UCSC Genome Browser custom track) |
| Alignm length: | 719 |
| Alignm identity: | 534 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 46 |
| Conread position: | 1-690 |
| Cow position: | chr21:10851227-10851933 (view UCSC Genome Browser custom track) |
| Alignm length: | 715 |
| Alignm identity: | 521 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 255 |
| Conread position: | 1-690 |
| Cow position: | chr21:11506752-11507470 (view UCSC Genome Browser custom track) |
| Alignm length: | 720 |
| Alignm identity: | 522 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 487 |
| Conread position: | 1-690 |
| Cow position: | chr21:27069820-27069108 (view UCSC Genome Browser custom track) |
| Alignm length: | 721 |
| Alignm identity: | 536 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 150 |
| Conread position: | 1-690 |
| Cow position: | chr21:33253328-33254037 (view UCSC Genome Browser custom track) |
| Alignm length: | 716 |
| Alignm identity: | 522 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 47 |
| Conread position: | 1-690 |
| Cow position: | chr21:37372385-37373082 (view UCSC Genome Browser custom track) |
| Alignm length: | 709 |
| Alignm identity: | 527 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 42 |
| Conread position: | 1-690 |
| Cow position: | chr21:39426207-39426920 (view UCSC Genome Browser custom track) |
| Alignm length: | 725 |
| Alignm identity: | 504 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 42 |
| Conread position: | 1-690 |
| Cow position: | chr21:40270527-40269816 (view UCSC Genome Browser custom track) |
| Alignm length: | 716 |
| Alignm identity: | 536 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 43 |
| Conread position: | 1-690 |
| Cow position: | chr21:47942095-47942802 (view UCSC Genome Browser custom track) |
| Alignm length: | 717 |
| Alignm identity: | 539 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 46 |
| Conread position: | 2-349 |
| Cow position: | chr21:468013-468355 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 44 |
| Conread position: | 2-429 |
| Cow position: | chr21:16693377-16693805 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 285 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 21, 25 |
| Conread position: | 2-538 |
| Cow position: | chr21:4185053-4185614 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 126 |
| Conread position: | 2-622 |
| Cow position: | chr21:34076638-34076032 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 402 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 175, 36 |
| Conread position: | 2-656 |
| Cow position: | chr21:28736323-28737010 (view UCSC Genome Browser custom track) |
| Alignm length: | 698 |
| Alignm identity: | 496 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 32 |
| Conread position: | 3-688 |
| Cow position: | chr21:2539933-2539224 (view UCSC Genome Browser custom track) |
| Alignm length: | 716 |
| Alignm identity: | 495 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 45 |
| Conread position: | 9-225 |
| Cow position: | chr21:30562639-30562848 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 208, 38 |
| Conread position: | 9-571 |
| Cow position: | chr21:35144913-35145481 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 19 |
| Conread position: | 9-690 |
| Cow position: | chr21:147085-147777 (view UCSC Genome Browser custom track) |
| Alignm length: | 705 |
| Alignm identity: | 527 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 39 |
| Conread position: | 9-690 |
| Cow position: | chr21:28256584-28257277 (view UCSC Genome Browser custom track) |
| Alignm length: | 720 |
| Alignm identity: | 518 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 34 |
| Conread position: | 9-690 |
| Cow position: | chr21:31515171-31514460 (view UCSC Genome Browser custom track) |
| Alignm length: | 715 |
| Alignm identity: | 536 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 478 |
| Conread position: | 10-311 |
| Cow position: | chr21:9893051-9893353 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 226 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 161, 60 |
| Conread position: | 19-690 |
| Cow position: | chr21:27566911-27567600 (view UCSC Genome Browser custom track) |
| Alignm length: | 704 |
| Alignm identity: | 520 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 25 |
| Conread position: | 20-690 |
| Cow position: | chr21:30598313-30597615 (view UCSC Genome Browser custom track) |
| Alignm length: | 707 |
| Alignm identity: | 520 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 27 |
| Conread position: | 25-690 |
| Cow position: | chr21:47646502-47647188 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 513 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 22 |
| Conread position: | 27-690 |
| Cow position: | chr21:2417385-2418060 (view UCSC Genome Browser custom track) |
| Alignm length: | 685 |
| Alignm identity: | 524 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 16 |
| Conread position: | 35-690 |
| Cow position: | chr21:36979742-36979044 (view UCSC Genome Browser custom track) |
| Alignm length: | 701 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 84 |
| Conread position: | 49-690 |
| Cow position: | chr21:2712141-2712753 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 471 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 15 |
| Conread position: | 49-690 |
| Cow position: | chr21:4588788-4588159 (view UCSC Genome Browser custom track) |
| Alignm length: | 656 |
| Alignm identity: | 480 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 232 |
| Conread position: | 49-690 |
| Cow position: | chr21:26635965-26635301 (view UCSC Genome Browser custom track) |
| Alignm length: | 669 |
| Alignm identity: | 473 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 72 |
| Conread position: | 66-690 |
| Cow position: | chr21:4564682-4565317 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 8 |
| Conread position: | 67-660 |
| Cow position: | chr21:28613556-28614150 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 466 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 120 |
| Conread position: | 71-659 |
| Cow position: | chr21:5012489-5011891 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 19 |
| Conread position: | 79-690 |
| Cow position: | chr21:5018357-5018996 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 202 |
| Conread position: | 104-652 |
| Cow position: | chr21:21714236-21713681 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 350 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 29, 48 |
| Conread position: | 117-690 |
| Cow position: | chr21:10567963-10568554 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 303 |
| Conread position: | 147-296 |
| Cow position: | chr21:37718618-37718462 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 24, 60 |
| Conread position: | 150-677 |
| Cow position: | chr21:20743318-20742797 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 23 |
| Conread position: | 160-690 |
| Cow position: | chr21:34594697-34594187 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 113 |
| Conread position: | 165-641 |
| Cow position: | chr21:38023435-38023935 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 338 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 57, 204 |
| Conread position: | 228-556 |
| Cow position: | chr21:25783233-25783581 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 111, 91 |
| Conread position: | 228-690 |
| Cow position: | chr21:19612138-19612616 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 253 |
| Conread position: | 241-677 |
| Cow position: | chr21:6625929-6626375 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 122 |
| Conread position: | 263-415 |
| Cow position: | chr21:2673551-2673390 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 266-690 |
| Cow position: | chr21:26836603-26837046 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 270-690 |
| Cow position: | chr21:2880398-2879970 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 198 |
| Conread position: | 270-690 |
| Cow position: | chr21:31250439-31250848 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 62 |
| Conread position: | 272-690 |
| Cow position: | chr21:13298025-13298447 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 162 |
| Conread position: | 277-678 |
| Cow position: | chr21:38801864-38802281 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 198 |
| Conread position: | 278-690 |
| Cow position: | chr21:468336-468753 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 29 |
| Conread position: | 294-690 |
| Cow position: | chr21:34655289-34655684 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 166 |
| Conread position: | 309-690 |
| Cow position: | chr21:30563138-30563520 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 155 |
Show alignments to all cow chromosomes.