Cow genome map

Conread name: Pig4-TMW8008H19

Conread position: 1-199
Cow position: chr29:6265287-6265082 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 153
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 48, 0

Conread position: 1-282
Cow position: chr29:27262909-27262625 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 208
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 74, 43

Conread position: 1-314
Cow position: chr29:16111368-16111698 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 233
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 56, 134

Conread position: 1-338
Cow position: chr29:43323545-43323888 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 127

Conread position: 1-386
Cow position: chr29:47450-47043 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 45

Conread position: 1-388
Cow position: chr29:10822996-10822592 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 47

Conread position: 1-446
Cow position: chr29:45586388-45585952 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 44

Conread position: 1-451
Cow position: chr29:31096395-31095925 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 42

Conread position: 1-530
Cow position: chr29:251733-252259 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 47

Conread position: 1-576
Cow position: chr29:18855963-18855365 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 42

Conread position: 1-580
Cow position: chr29:21426041-21425440 (view UCSC Genome Browser custom track)
Alignm length: 610
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 387

Conread position: 1-587
Cow position: chr29:42939212-42938611 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 483

Conread position: 1-666
Cow position: chr29:6213512-6214170 (view UCSC Genome Browser custom track)
Alignm length: 679
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 42

Conread position: 1-668
Cow position: chr29:5981727-5981049 (view UCSC Genome Browser custom track)
Alignm length: 693
Alignm identity: 505
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 45

Conread position: 1-670
Cow position: chr29:15997679-15996978 (view UCSC Genome Browser custom track)
Alignm length: 705
Alignm identity: 516
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 186

Conread position: 1-678
Cow position: chr29:3176427-3175771 (view UCSC Genome Browser custom track)
Alignm length: 696
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 15

Conread position: 1-685
Cow position: chr29:32558760-32558062 (view UCSC Genome Browser custom track)
Alignm length: 712
Alignm identity: 506
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 42

Conread position: 1-689
Cow position: chr29:14085141-14084435 (view UCSC Genome Browser custom track)
Alignm length: 719
Alignm identity: 542
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 134

Conread position: 1-690
Cow position: chr29:2100837-2101533 (view UCSC Genome Browser custom track)
Alignm length: 706
Alignm identity: 527
Alignm E-value: 0
Alignm gaps (pig, cow): 287, 23

Conread position: 1-690
Cow position: chr29:5958587-5959269 (view UCSC Genome Browser custom track)
Alignm length: 703
Alignm identity: 498
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 41

Conread position: 1-690
Cow position: chr29:7845374-7846084 (view UCSC Genome Browser custom track)
Alignm length: 714
Alignm identity: 509
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 42

Conread position: 1-690
Cow position: chr29:13583067-13583775 (view UCSC Genome Browser custom track)
Alignm length: 714
Alignm identity: 520
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 32

Conread position: 1-690
Cow position: chr29:14210581-14209858 (view UCSC Genome Browser custom track)
Alignm length: 733
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 45

Conread position: 1-690
Cow position: chr29:14586908-14587613 (view UCSC Genome Browser custom track)
Alignm length: 712
Alignm identity: 530
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 74

Conread position: 1-690
Cow position: chr29:19622296-19621578 (view UCSC Genome Browser custom track)
Alignm length: 724
Alignm identity: 536
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 47

Conread position: 1-690
Cow position: chr29:19654616-19655312 (view UCSC Genome Browser custom track)
Alignm length: 710
Alignm identity: 526
Alignm E-value: 0
Alignm gaps (pig, cow): 219, 45

Conread position: 1-690
Cow position: chr29:20252152-20252859 (view UCSC Genome Browser custom track)
Alignm length: 717
Alignm identity: 520
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 297

Conread position: 1-690
Cow position: chr29:23977108-23977817 (view UCSC Genome Browser custom track)
Alignm length: 715
Alignm identity: 529
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 151

Conread position: 1-690
Cow position: chr29:25931553-25930827 (view UCSC Genome Browser custom track)
Alignm length: 728
Alignm identity: 530
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 495

Conread position: 1-690
Cow position: chr29:27979937-27979227 (view UCSC Genome Browser custom track)
Alignm length: 715
Alignm identity: 505
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 42

Conread position: 1-690
Cow position: chr29:32541081-32541788 (view UCSC Genome Browser custom track)
Alignm length: 716
Alignm identity: 519
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 47

Conread position: 1-690
Cow position: chr29:34798822-34798117 (view UCSC Genome Browser custom track)
Alignm length: 709
Alignm identity: 520
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 48

Conread position: 1-690
Cow position: chr29:38227965-38228671 (view UCSC Genome Browser custom track)
Alignm length: 713
Alignm identity: 518
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 46

Conread position: 1-690
Cow position: chr29:39078718-39078017 (view UCSC Genome Browser custom track)
Alignm length: 712
Alignm identity: 526
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 46

Conread position: 1-690
Cow position: chr29:40501993-40501313 (view UCSC Genome Browser custom track)
Alignm length: 705
Alignm identity: 519
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 47

Conread position: 1-690
Cow position: chr29:42803398-42804085 (view UCSC Genome Browser custom track)
Alignm length: 712
Alignm identity: 507
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 42

Conread position: 1-690
Cow position: chr29:45460710-45461440 (view UCSC Genome Browser custom track)
Alignm length: 733
Alignm identity: 532
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 500

Conread position: 2-336
Cow position: chr29:35297821-35298151 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 243
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 177, 41

Conread position: 2-402
Cow position: chr29:9642772-9642384 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 286
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 293, 41

Conread position: 2-419
Cow position: chr29:35814987-35814550 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 41

Conread position: 2-664
Cow position: chr29:32891774-32892443 (view UCSC Genome Browser custom track)
Alignm length: 684
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 45

Conread position: 2-677
Cow position: chr29:15946835-15946152 (view UCSC Genome Browser custom track)
Alignm length: 706
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 46

Conread position: 2-686
Cow position: chr29:8664499-8665195 (view UCSC Genome Browser custom track)
Alignm length: 712
Alignm identity: 521
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 47

Conread position: 2-689
Cow position: chr29:609637-608955 (view UCSC Genome Browser custom track)
Alignm length: 706
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 239, 41

Conread position: 2-690
Cow position: chr29:13622857-13622164 (view UCSC Genome Browser custom track)
Alignm length: 713
Alignm identity: 510
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 41

Conread position: 3-690
Cow position: chr29:31182393-31183096 (view UCSC Genome Browser custom track)
Alignm length: 711
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 40

Conread position: 7-429
Cow position: chr29:2465872-2465423 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 208

Conread position: 7-595
Cow position: chr29:38237532-38236935 (view UCSC Genome Browser custom track)
Alignm length: 610
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 415

Conread position: 7-677
Cow position: chr29:2949364-2948699 (view UCSC Genome Browser custom track)
Alignm length: 688
Alignm identity: 467
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 39

Conread position: 7-690
Cow position: chr29:16023563-16024257 (view UCSC Genome Browser custom track)
Alignm length: 701
Alignm identity: 520
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 50

Conread position: 8-690
Cow position: chr29:26163838-26163139 (view UCSC Genome Browser custom track)
Alignm length: 706
Alignm identity: 534
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 38

Conread position: 9-369
Cow position: chr29:7430223-7429841 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 38

Conread position: 9-498
Cow position: chr29:10647254-10646753 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 38

Conread position: 12-690
Cow position: chr29:2691162-2691856 (view UCSC Genome Browser custom track)
Alignm length: 700
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 285

Conread position: 19-690
Cow position: chr29:45205505-45206224 (view UCSC Genome Browser custom track)
Alignm length: 725
Alignm identity: 526
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 28

Conread position: 44-690
Cow position: chr29:38207647-38206970 (view UCSC Genome Browser custom track)
Alignm length: 679
Alignm identity: 482
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 446

Conread position: 47-543
Cow position: chr29:3328365-3328886 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 437

Conread position: 57-690
Cow position: chr29:2747395-2746769 (view UCSC Genome Browser custom track)
Alignm length: 652
Alignm identity: 486
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 77

Conread position: 60-676
Cow position: chr29:14112589-14113222 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 91

Conread position: 68-690
Cow position: chr29:2840287-2839649 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 36

Conread position: 74-545
Cow position: chr29:3699017-3699487 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 40

Conread position: 76-680
Cow position: chr29:30259464-30258866 (view UCSC Genome Browser custom track)
Alignm length: 616
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 78

Conread position: 81-397
Cow position: chr29:32804486-32804810 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 237
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 61, 45

Conread position: 110-544
Cow position: chr29:42092856-42093313 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 20

Conread position: 116-690
Cow position: chr29:16345306-16345906 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 186

Conread position: 117-690
Cow position: chr29:5236118-5236715 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 366

Conread position: 186-690
Cow position: chr29:6264829-6264306 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 86

Conread position: 197-536
Cow position: chr29:6198567-6198213 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 253
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 23, 48

Conread position: 227-676
Cow position: chr29:19953847-19954300 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 179

Conread position: 228-686
Cow position: chr29:36635167-36634693 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 41

Conread position: 236-690
Cow position: chr29:647052-647500 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 55

Conread position: 236-690
Cow position: chr29:35298141-35298604 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 133

Conread position: 238-690
Cow position: chr29:21431625-21431158 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 236

Conread position: 242-690
Cow position: chr29:27180522-27180059 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 232

Conread position: 262-690
Cow position: chr29:27262466-27262017 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 156

Conread position: 264-690
Cow position: chr29:10023079-10022638 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 210

Conread position: 266-629
Cow position: chr29:29503004-29502626 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 208

Conread position: 276-690
Cow position: chr29:409979-409568 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 194

Conread position: 288-690
Cow position: chr29:13851593-13851184 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 183

Conread position: 300-690
Cow position: chr29:32287540-32287940 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 167

Conread position: 363-690
Cow position: chr29:9641423-9641091 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 102

Conread position: 472-690
Cow position: chr29:27812566-27812777 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 174
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 28, 71

Conread position: 529-690
Cow position: chr29:17406659-17406818 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 126
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 20, 0

Conread position: 541-690
Cow position: chr29:9082340-9082193 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 120
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 17, 0

Show alignments to all cow chromosomes.