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Cow genome map

           
Conread name:
           
Pig4-TMW8008H19
        

               
Conread position:
               
1-212
               

               
Cow position:
               
chrX:31186441-31186226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
59, 36
               

               
Conread position:
               
1-287
               

               
Cow position:
               
chrX:979376-979670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
178, 42
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chrX:5394229-5393878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
60, 40
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chrX:9126141-9126488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 42
               

               
Conread position:
               
1-343
               

               
Cow position:
               
chrX:22618517-22618175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
176, 46
               

               
Conread position:
               
1-343
               

               
Cow position:
               
chrX:29852784-29852429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 47
               

               
Conread position:
               
1-383
               

               
Cow position:
               
chrX:10416677-10416283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
52, 101
               

               
Conread position:
               
1-406
               

               
Cow position:
               
chrX:8480430-8480862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 42
               

               
Conread position:
               
1-419
               

               
Cow position:
               
chrX:983443-983882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 42
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chrX:15590761-15591197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 302
               

               
Conread position:
               
1-437
               

               
Cow position:
               
chrX:5864175-5864631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 42
               

               
Conread position:
               
1-458
               

               
Cow position:
               
chrX:7482414-7482890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 42
               

               
Conread position:
               
1-471
               

               
Cow position:
               
chrX:18553210-18553690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 37
               

               
Conread position:
               
1-495
               

               
Cow position:
               
chrX:13182345-13181861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 64
               

               
Conread position:
               
1-496
               

               
Cow position:
               
chrX:4797105-4797569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 46
               

               
Conread position:
               
1-498
               

               
Cow position:
               
chrX:12287623-12287108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 42
               

               
Conread position:
               
1-525
               

               
Cow position:
               
chrX:1834600-1835138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 45
               

               
Conread position:
               
1-530
               

               
Cow position:
               
chrX:22816630-22817169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 157
               

               
Conread position:
               
1-562
               

               
Cow position:
               
chrX:5335705-5335117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 42
               

               
Conread position:
               
1-564
               

               
Cow position:
               
chrX:30057833-30058412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
591
               

               
Alignm identity:
               
430
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 41
               

               
Conread position:
               
1-574
               

               
Cow position:
               
chrX:29286211-29286804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
456
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 40
               

               
Conread position:
               
1-626
               

               
Cow position:
               
chrX:21059562-21060192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
646
               

               
Alignm identity:
               
488
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 182
               

               
Conread position:
               
1-640
               

               
Cow position:
               
chrX:7031244-7031906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
666
               

               
Alignm identity:
               
479
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 42
               

               
Conread position:
               
1-664
               

               
Cow position:
               
chrX:15486969-15486333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
677
               

               
Alignm identity:
               
510
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 45
               

               
Conread position:
               
1-675
               

               
Cow position:
               
chrX:34219089-34219769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
689
               

               
Alignm identity:
               
509
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 262
               

               
Conread position:
               
1-677
               

               
Cow position:
               
chrX:17477644-17476948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
700
               

               
Alignm identity:
               
511
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 42
               

               
Conread position:
               
1-677
               

               
Cow position:
               
chrX:30366001-30365329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
695
               

               
Alignm identity:
               
499
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 36
               

               
Conread position:
               
1-678
               

               
Cow position:
               
chrX:3420428-3419737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
704
               

               
Alignm identity:
               
493
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 42
               

               
Conread position:
               
1-678
               

               
Cow position:
               
chrX:14595627-14596325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
704
               

               
Alignm identity:
               
518
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 115
               

               
Conread position:
               
1-678
               

               
Cow position:
               
chrX:16362343-16361642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
704
               

               
Alignm identity:
               
501
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 40
               

               
Conread position:
               
1-678
               

               
Cow position:
               
chrX:35530644-35531333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
704
               

               
Alignm identity:
               
506
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 59
               

               
Conread position:
               
1-680
               

               
Cow position:
               
chrX:15178644-15177956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
710
               

               
Alignm identity:
               
489
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 42
               

               
Conread position:
               
1-685
               

               
Cow position:
               
chrX:12702923-12702217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
711
               

               
Alignm identity:
               
512
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 42
               

               
Conread position:
               
1-685
               

               
Cow position:
               
chrX:14784683-14783989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
706
               

               
Alignm identity:
               
493
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
221, 42
               

               
Conread position:
               
1-688
               

               
Cow position:
               
chrX:29949823-29949123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
717
               

               
Alignm identity:
               
535
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 388
               

               
Conread position:
               
1-689
               

               
Cow position:
               
chrX:321246-321954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
717
               

               
Alignm identity:
               
503
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 46
               

               
Conread position:
               
1-689
               

               
Cow position:
               
chrX:23020110-23020784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
699
               

               
Alignm identity:
               
500
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 42
               

               
Conread position:
               
1-689
               

               
Cow position:
               
chrX:31199334-31200045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
717
               

               
Alignm identity:
               
522
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 280
               

               
Conread position:
               
1-690
               

               
Cow position:
               
chrX:674424-673717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
714
               

               
Alignm identity:
               
523
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 117
               

               
Conread position:
               
1-690
               

               
Cow position:
               
chrX:971556-972264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
719
               

               
Alignm identity:
               
533
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 179
               

               
Conread position:
               
1-690
               

               
Cow position:
               
chrX:1547754-1548470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
720
               

               
Alignm identity:
               
543
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 151
               

               
Conread position:
               
1-690
               

               
Cow position:
               
chrX:2562078-2561366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
719
               

               
Alignm identity:
               
513
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 24
               

               
Conread position:
               
1-690
               

               
Cow position:
               
chrX:2577202-2577912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
716
               

               
Alignm identity:
               
522
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 42
               

               
Conread position:
               
1-690
               

               
Cow position:
               
chrX:2858594-2857887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
715
               

               
Alignm identity:
               
514
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 42
               

               
Conread position:
               
1-690
               

               
Cow position:
               
chrX:3375125-3374419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
714
               

               
Alignm identity:
               
508
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 40
               

               
Conread position:
               
1-690
               

               
Cow position:
               
chrX:3467855-3467157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
717
               

               
Alignm identity:
               
511
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 42
               

               
Conread position:
               
1-690
               

               
Cow position:
               
chrX:5282988-5282294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
716
               

               
Alignm identity:
               
493
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 42
               

               
Conread position:
               
1-690
               

               
Cow position:
               
chrX:5296768-5296068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
716
               

               
Alignm identity:
               
528
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 77
               

               
Conread position:
               
1-690
               

               
Cow position:
               
chrX:6872292-6871586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
712
               

               
Alignm identity:
               
519
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 395
               

               
Conread position:
               
1-690
               

               
Cow position:
               
chrX:7752682-7753394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
722
               

               
Alignm identity:
               
516
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 19
               

               
Conread position:
               
1-690
               

               
Cow position:
               
chrX:8588944-8589669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
731
               

               
Alignm identity:
               
518
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 42
               

               
Conread position:
               
1-690
               

               
Cow position:
               
chrX:9009115-9009826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
718
               

               
Alignm identity:
               
509
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 117
               

               
Conread position:
               
1-690
               

               
Cow position:
               
chrX:11148554-11147843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
716
               

               
Alignm identity:
               
517
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
221, 42
               

               
Conread position:
               
1-690
               

               
Cow position:
               
chrX:12343716-12344431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
720
               

               
Alignm identity:
               
505
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 42
               

               
Conread position:
               
1-690
               

               
Cow position:
               
chrX:12653745-12653015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
734
               

               
Alignm identity:
               
520
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 42
               

               
Conread position:
               
1-690
               

               
Cow position:
               
chrX:12668968-12668255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
722
               

               
Alignm identity:
               
519
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 42
               

               
Conread position:
               
1-690
               

               
Cow position:
               
chrX:13075916-13075213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
713
               

               
Alignm identity:
               
505
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 42
               

               
Conread position:
               
1-690
               

               
Cow position:
               
chrX:13096491-13095774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
726
               

               
Alignm identity:
               
512
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 42
               

               
Conread position:
               
1-690
               

               
Cow position:
               
chrX:13397438-13396729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
716
               

               
Alignm identity:
               
516
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 42
               

               
Conread position:
               
1-690
               

               
Cow position:
               
chrX:13412351-13411638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
723
               

               
Alignm identity:
               
512
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 45
               

               
Conread position:
               
1-690
               

               
Cow position:
               
chrX:14460304-14460998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
706
               

               
Alignm identity:
               
503
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 42
               

               
Conread position:
               
1-690
               

               
Cow position:
               
chrX:15126455-15125740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
723
               

               
Alignm identity:
               
530
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 279
               

               
Conread position:
               
1-690
               

               
Cow position:
               
chrX:16811662-16810957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
714
               

               
Alignm identity:
               
515
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
221, 46
               

               
Conread position:
               
1-690
               

               
Cow position:
               
chrX:18952900-18952188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
720
               

               
Alignm identity:
               
535
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 45
               

               
Conread position:
               
1-690
               

               
Cow position:
               
chrX:21490944-21491648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
724
               

               
Alignm identity:
               
529
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 115
               

               
Conread position:
               
1-690
               

               
Cow position:
               
chrX:22488926-22489646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
727
               

               
Alignm identity:
               
523
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 41
               

               
Conread position:
               
1-690
               

               
Cow position:
               
chrX:23277807-23278513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
716
               

               
Alignm identity:
               
532
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 46
               

               
Conread position:
               
1-690
               

               
Cow position:
               
chrX:23389736-23389045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
712
               

               
Alignm identity:
               
521
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 46
               

               
Conread position:
               
1-690
               

               
Cow position:
               
chrX:23455236-23454529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
713
               

               
Alignm identity:
               
539
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 46
               

               
Conread position:
               
1-690
               

               
Cow position:
               
chrX:26766429-26765708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
723
               

               
Alignm identity:
               
525
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 652
               

               
Conread position:
               
1-690
               

               
Cow position:
               
chrX:27316055-27316768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
717
               

               
Alignm identity:
               
523
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 47
               

               
Conread position:
               
1-690
               

               
Cow position:
               
chrX:27425545-27424832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
717
               

               
Alignm identity:
               
519
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 42
               

               
Conread position:
               
1-690
               

               
Cow position:
               
chrX:27593209-27592500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
717
               

               
Alignm identity:
               
543
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 41
               

               
Conread position:
               
1-690
               

               
Cow position:
               
chrX:27619360-27618642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
721
               

               
Alignm identity:
               
511
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 488
               

               
Conread position:
               
1-690
               

               
Cow position:
               
chrX:28561108-28560400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
718
               

               
Alignm identity:
               
501
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 40
               

               
Conread position:
               
1-690
               

               
Cow position:
               
chrX:28585760-28586471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
716
               

               
Alignm identity:
               
506
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 46
               

               
Conread position:
               
1-690
               

               
Cow position:
               
chrX:28626854-28626156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
715
               

               
Alignm identity:
               
520
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 482
               

               
Conread position:
               
1-690
               

               
Cow position:
               
chrX:28650772-28650079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
715
               

               
Alignm identity:
               
519
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 42
               

               
Conread position:
               
1-690
               

               
Cow position:
               
chrX:29172982-29172277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
713
               

               
Alignm identity:
               
515
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 42
               

               
Conread position:
               
1-690
               

               
Cow position:
               
chrX:29793253-29792544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
718
               

               
Alignm identity:
               
536
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 152
               

               
Conread position:
               
1-690
               

               
Cow position:
               
chrX:29910644-29909937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
717
               

               
Alignm identity:
               
520
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 42
               

               
Conread position:
               
1-690
               

               
Cow position:
               
chrX:29935377-29936088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
716
               

               
Alignm identity:
               
507
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 42
               

               
Conread position:
               
1-690
               

               
Cow position:
               
chrX:30201951-30201247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
713
               

               
Alignm identity:
               
505
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 42
               

               
Conread position:
               
1-690
               

               
Cow position:
               
chrX:30231316-30230615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
713
               

               
Alignm identity:
               
522
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 56
               

               
Conread position:
               
1-690
               

               
Cow position:
               
chrX:32066384-32065678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
715
               

               
Alignm identity:
               
515
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 42
               

               
Conread position:
               
1-690
               

               
Cow position:
               
chrX:37812943-37813638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
717
               

               
Alignm identity:
               
509
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 107
               

               
Conread position:
               
1-690
               

               
Cow position:
               
chrX:39563155-39562462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
703
               

               
Alignm identity:
               
510
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 93
               

               
Conread position:
               
1-690
               

               
Cow position:
               
chrX:41850418-41849734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
711
               

               
Alignm identity:
               
519
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 42
               

               
Conread position:
               
2-280
               

               
Cow position:
               
chrX:13416653-13416365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
102, 38
               

               
Conread position:
               
2-406
               

               
Cow position:
               
chrX:13053789-13054217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 46
               

               
Conread position:
               
2-415
               

               
Cow position:
               
chrX:8574696-8574285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 41
               

               
Conread position:
               
2-640
               

               
Cow position:
               
chrX:35940468-35939845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
654
               

               
Alignm identity:
               
435
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 41
               

               
Conread position:
               
2-684
               

               
Cow position:
               
chrX:30138799-30138093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
713
               

               
Alignm identity:
               
542
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 199
               

               
Conread position:
               
2-689
               

               
Cow position:
               
chrX:21269281-21268569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
721
               

               
Alignm identity:
               
508
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 257
               

               
Conread position:
               
2-690
               

               
Cow position:
               
chrX:15980177-15979468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
714
               

               
Alignm identity:
               
511
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 41
               

               
Conread position:
               
2-690
               

               
Cow position:
               
chrX:16276428-16277139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
715
               

               
Alignm identity:
               
515
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 45
               

               
Conread position:
               
2-690
               

               
Cow position:
               
chrX:16780085-16780771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
715
               

               
Alignm identity:
               
510
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 41
               

               
Conread position:
               
2-690
               

               
Cow position:
               
chrX:26528757-26529454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
706
               

               
Alignm identity:
               
522
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 45
               

               
Conread position:
               
2-690
               

               
Cow position:
               
chrX:30011780-30012489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
713
               

               
Alignm identity:
               
500
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 41
               

               
Conread position:
               
2-690
               

               
Cow position:
               
chrX:41102684-41101984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
710
               

               
Alignm identity:
               
470
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 41
               

               
Conread position:
               
3-379
               

               
Cow position:
               
chrX:37849783-37850159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
176, 111
               

               
Conread position:
               
3-690
               

               
Cow position:
               
chrX:5322944-5322238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
717
               

               
Alignm identity:
               
518
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 40
               

               
Conread position:
               
3-690
               

               
Cow position:
               
chrX:12183699-12184430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
740
               

               
Alignm identity:
               
527
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 68
               

               
Conread position:
               
3-690
               

               
Cow position:
               
chrX:12314973-12314275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
710
               

               
Alignm identity:
               
542
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 40
               

               
Conread position:
               
3-690
               

               
Cow position:
               
chrX:24324791-24324075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
721
               

               
Alignm identity:
               
508
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 40
               

               
Conread position:
               
3-690
               

               
Cow position:
               
chrX:27987042-27986341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
712
               

               
Alignm identity:
               
504
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 40
               

               
Conread position:
               
3-690
               

               
Cow position:
               
chrX:35386399-35385725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
712
               

               
Alignm identity:
               
477
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 46
               

               
Conread position:
               
7-651
               

               
Cow position:
               
chrX:23040336-23039674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
666
               

               
Alignm identity:
               
498
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 39
               

               
Conread position:
               
7-677
               

               
Cow position:
               
chrX:4752832-4752149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
698
               

               
Alignm identity:
               
473
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 36
               

               
Conread position:
               
7-690
               

               
Cow position:
               
chrX:21580252-21580975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
727
               

               
Alignm identity:
               
534
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 40
               

               
Conread position:
               
7-690
               

               
Cow position:
               
chrX:29885773-29886474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
710
               

               
Alignm identity:
               
513
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 35
               

               
Conread position:
               
9-296
               

               
Cow position:
               
chrX:6241818-6241530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
44, 68
               

               
Conread position:
               
9-690
               

               
Cow position:
               
chrX:2481841-2481143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
708
               

               
Alignm identity:
               
514
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 37
               

               
Conread position:
               
9-690
               

               
Cow position:
               
chrX:6281970-6281293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
698
               

               
Alignm identity:
               
515
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 277
               

               
Conread position:
               
9-690
               

               
Cow position:
               
chrX:21830317-21831004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
701
               

               
Alignm identity:
               
512
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 39
               

               
Conread position:
               
9-690
               

               
Cow position:
               
chrX:26757826-26757141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
696
               

               
Alignm identity:
               
508
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 38
               

               
Conread position:
               
9-690
               

               
Cow position:
               
chrX:29096984-29097686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
709
               

               
Alignm identity:
               
522
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 34
               

               
Conread position:
               
9-690
               

               
Cow position:
               
chrX:36136773-36136084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
711
               

               
Alignm identity:
               
542
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 191
               

               
Conread position:
               
9-690
               

               
Cow position:
               
chrX:38148379-38149081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
710
               

               
Alignm identity:
               
534
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 433
               

               
Conread position:
               
11-690
               

               
Cow position:
               
chrX:30183146-30182438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
715
               

               
Alignm identity:
               
529
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 37
               

               
Conread position:
               
12-688
               

               
Cow position:
               
chrX:28868447-28867767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
705
               

               
Alignm identity:
               
485
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 31
               

               
Conread position:
               
13-424
               

               
Cow position:
               
chrX:7094202-7094625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 100
               

               
Conread position:
               
13-456
               

               
Cow position:
               
chrX:8610912-8610449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 63
               

               
Conread position:
               
13-543
               

               
Cow position:
               
chrX:45377313-45376749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 30
               

               
Conread position:
               
14-690
               

               
Cow position:
               
chrX:18658997-18658318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
691
               

               
Alignm identity:
               
492
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 29
               

               
Conread position:
               
14-690
               

               
Cow position:
               
chrX:37014915-37015606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
703
               

               
Alignm identity:
               
502
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 30
               

               
Conread position:
               
19-566
               

               
Cow position:
               
chrX:26426769-26426226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
570
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 24
               

               
Conread position:
               
19-677
               

               
Cow position:
               
chrX:17666986-17666321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
680
               

               
Alignm identity:
               
525
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 27
               

               
Conread position:
               
23-540
               

               
Cow position:
               
chrX:16463513-16462978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 16
               

               
Conread position:
               
25-677
               

               
Cow position:
               
chrX:18535255-18535877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
660
               

               
Alignm identity:
               
474
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 23
               

               
Conread position:
               
27-343
               

               
Cow position:
               
chrX:23132773-23133099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 37
               

               
Conread position:
               
47-315
               

               
Cow position:
               
chrX:16041373-16041082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
11, 100
               

               
Conread position:
               
47-555
               

               
Cow position:
               
chrX:12354060-12354593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 90
               

               
Conread position:
               
47-690
               

               
Cow position:
               
chrX:17052365-17053041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
679
               

               
Alignm identity:
               
494
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 87
               

               
Conread position:
               
48-307
               

               
Cow position:
               
chrX:16700143-16700414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
94, 226
               

               
Conread position:
               
48-597
               

               
Cow position:
               
chrX:44388587-44389157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
583
               

               
Alignm identity:
               
440
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 88
               

               
Conread position:
               
48-665
               

               
Cow position:
               
chrX:21589817-21590445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
638
               

               
Alignm identity:
               
503
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 255
               

               
Conread position:
               
54-403
               

               
Cow position:
               
chrX:27993636-27993263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
16, 27
               

               
Conread position:
               
55-231
               

               
Cow position:
               
chrX:22129081-22128903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
57-404
               

               
Cow position:
               
chrX:9093409-9093779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 18
               

               
Conread position:
               
60-690
               

               
Cow position:
               
chrX:6014117-6013483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
652
               

               
Alignm identity:
               
438
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 245
               

               
Conread position:
               
64-658
               

               
Cow position:
               
chrX:18242011-18242598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
611
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 30
               

               
Conread position:
               
65-628
               

               
Cow position:
               
chrX:1829978-1829429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
582
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
112, 63
               

               
Conread position:
               
68-588
               

               
Cow position:
               
chrX:47396687-47396157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
71, 25
               

               
Conread position:
               
76-690
               

               
Cow position:
               
chrX:41888143-41887509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
653
               

               
Alignm identity:
               
444
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 269
               

               
Conread position:
               
80-690
               

               
Cow position:
               
chrX:26399246-26398636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
628
               

               
Alignm identity:
               
447
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 51
               

               
Conread position:
               
88-336
               

               
Cow position:
               
chrX:48368177-48367917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
55, 8
               

               
Conread position:
               
94-690
               

               
Cow position:
               
chrX:15600032-15600635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
608
               

               
Alignm identity:
               
453
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 60
               

               
Conread position:
               
100-690
               

               
Cow position:
               
chrX:21341269-21341893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
627
               

               
Alignm identity:
               
454
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 314
               

               
Conread position:
               
102-690
               

               
Cow position:
               
chrX:2815602-2814993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
614
               

               
Alignm identity:
               
447
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 185
               

               
Conread position:
               
114-690
               

               
Cow position:
               
chrX:12480885-12481486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
606
               

               
Alignm identity:
               
433
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 159
               

               
Conread position:
               
117-303
               

               
Cow position:
               
chrX:27495575-27495772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
124-689
               

               
Cow position:
               
chrX:20695916-20695347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
583
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 59
               

               
Conread position:
               
134-657
               

               
Cow position:
               
chrX:46235654-46236199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 126
               

               
Conread position:
               
137-432
               

               
Cow position:
               
chrX:35025967-35026275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
85, 36
               

               
Conread position:
               
137-690
               

               
Cow position:
               
chrX:28521681-28521115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
574
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 239
               

               
Conread position:
               
147-690
               

               
Cow position:
               
chrX:18451903-18452471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
570
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 337
               

               
Conread position:
               
151-690
               

               
Cow position:
               
chrX:27083895-27084462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
569
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 332
               

               
Conread position:
               
160-690
               

               
Cow position:
               
chrX:21643968-21643422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
558
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 325
               

               
Conread position:
               
170-689
               

               
Cow position:
               
chrX:2535121-2534594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 348
               

               
Conread position:
               
177-690
               

               
Cow position:
               
chrX:5356868-5356333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
538
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 297
               

               
Conread position:
               
180-637
               

               
Cow position:
               
chrX:25464896-25465351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
26, 39
               

               
Conread position:
               
183-690
               

               
Cow position:
               
chrX:24771902-24771372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 294
               

               
Conread position:
               
191-453
               

               
Cow position:
               
chrX:22128747-22128490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
15, 39
               

               
Conread position:
               
208-638
               

               
Cow position:
               
chrX:36837067-36836608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
10, 201
               

               
Conread position:
               
220-690
               

               
Cow position:
               
chrX:13447820-13447336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 206
               

               
Conread position:
               
220-690
               

               
Cow position:
               
chrX:16684830-16684346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 248
               

               
Conread position:
               
220-690
               

               
Cow position:
               
chrX:20035395-20034911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 254
               

               
Conread position:
               
228-690
               

               
Cow position:
               
chrX:15041518-15041054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 121
               

               
Conread position:
               
230-554
               

               
Cow position:
               
chrX:12294823-12295150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
59, 181
               

               
Conread position:
               
244-538
               

               
Cow position:
               
chrX:15144877-15144564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 232
               

               
Conread position:
               
252-690
               

               
Cow position:
               
chrX:28757607-28757154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 222
               

               
Conread position:
               
264-690
               

               
Cow position:
               
chrX:21753377-21752952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 27
               

               
Conread position:
               
275-690
               

               
Cow position:
               
chrX:39694708-39695134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 193
               

               
Conread position:
               
282-690
               

               
Cow position:
               
chrX:27495785-27496200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 182
               

               
Conread position:
               
287-561
               

               
Cow position:
               
chrX:36251240-36250949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
15, 157
               

               
Conread position:
               
287-690
               

               
Cow position:
               
chrX:22567179-22566765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 184
               

               
Conread position:
               
291-677
               

               
Cow position:
               
chrX:38691915-38692289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
39, 48
               

               
Conread position:
               
302-490
               

               
Cow position:
               
chrX:691170-691360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
60, 156
               

               
Conread position:
               
302-690
               

               
Cow position:
               
chrX:13054926-13055311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 119
               

               
Conread position:
               
360-690
               

               
Cow position:
               
chrX:6241272-6240944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 34
               

               
Conread position:
               
564-690
               

               
Cow position:
               
chrX:30058561-30058687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               
Show alignments to all cow chromosomes.