Cow genome map
| Conread name: | Pig4-TMW8010I17 |
| Conread position: | 1-264 |
| Cow position: | chr12:28471674-28471398 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 206 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 54, 13 |
| Conread position: | 9-261 |
| Cow position: | chr12:17001282-17001020 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 13-163 |
| Cow position: | chr12:3092561-3092715 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 60, 94 |
| Conread position: | 13-170 |
| Cow position: | chr12:24116344-24116510 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 13-177 |
| Cow position: | chr12:17269821-17269646 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 13-182 |
| Cow position: | chr12:24032515-24032343 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 59, 122 |
| Conread position: | 13-185 |
| Cow position: | chr12:15038957-15039137 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 13-185 |
| Cow position: | chr12:37169927-37170104 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 59, 109 |
| Conread position: | 13-220 |
| Cow position: | chr12:18550900-18550686 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 13-238 |
| Cow position: | chr12:4008265-4008491 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 100, 75 |
| Conread position: | 13-238 |
| Cow position: | chr12:9143406-9143183 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 58, 114 |
| Conread position: | 13-238 |
| Cow position: | chr12:24663133-24662905 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 59, 105 |
| Conread position: | 13-238 |
| Cow position: | chr12:27803031-27803260 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 59, 118 |
| Conread position: | 13-239 |
| Cow position: | chr12:27037431-27037660 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 184 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 59, 144 |
| Conread position: | 13-262 |
| Cow position: | chr12:9914808-9914552 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 51, 60 |
| Conread position: | 13-265 |
| Cow position: | chr12:24559377-24559111 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 59, 136 |
| Conread position: | 13-265 |
| Cow position: | chr12:39465598-39465336 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 124 |
| Conread position: | 13-266 |
| Cow position: | chr12:11056894-11056633 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 193 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 72, 146 |
| Conread position: | 13-266 |
| Cow position: | chr12:12178942-12178678 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 59, 92 |
| Conread position: | 13-266 |
| Cow position: | chr12:15531077-15530820 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 59, 222 |
| Conread position: | 13-266 |
| Cow position: | chr12:16605654-16605889 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 59, 83 |
| Conread position: | 13-266 |
| Cow position: | chr12:18020876-18020610 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 196 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 68, 20 |
| Conread position: | 13-266 |
| Cow position: | chr12:18123688-18123443 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 83 |
| Conread position: | 13-266 |
| Cow position: | chr12:18420903-18421170 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 95 |
| Conread position: | 13-266 |
| Cow position: | chr12:18518692-18518428 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 206 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 60, 146 |
| Conread position: | 13-266 |
| Cow position: | chr12:18577858-18577606 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 204 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 60, 133 |
| Conread position: | 13-266 |
| Cow position: | chr12:19502409-19502663 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 131 |
| Conread position: | 13-266 |
| Cow position: | chr12:30170688-30170424 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 34 |
| Conread position: | 13-266 |
| Cow position: | chr12:30605146-30605399 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 189 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 59, 70 |
| Conread position: | 13-266 |
| Cow position: | chr12:30745735-30745470 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 207 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 62, 40 |
| Conread position: | 13-266 |
| Cow position: | chr12:34148342-34148594 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 196 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 60, 95 |
| Conread position: | 13-266 |
| Cow position: | chr12:47804176-47803912 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 59, 175 |
| Conread position: | 13-305 |
| Cow position: | chr12:35669451-35669751 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 40, 192 |
| Conread position: | 14-266 |
| Cow position: | chr12:25561387-25561127 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 200 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 65, 18 |
| Conread position: | 15-170 |
| Cow position: | chr12:16670284-16670119 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 15-266 |
| Cow position: | chr12:15089533-15089251 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 55, 132 |
| Conread position: | 15-266 |
| Cow position: | chr12:15429579-15429843 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 15-266 |
| Cow position: | chr12:39486441-39486186 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 120 |
| Conread position: | 16-267 |
| Cow position: | chr12:26317481-26317222 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 196 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 56, 163 |
| Conread position: | 24-238 |
| Cow position: | chr12:43942481-43942270 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 47, 8 |
| Conread position: | 24-266 |
| Cow position: | chr12:42282831-42283080 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 46, 72 |
| Conread position: | 27-266 |
| Cow position: | chr12:5906061-5905814 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 151 |
| Conread position: | 32-254 |
| Cow position: | chr12:38454909-38454687 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 127 |
| Conread position: | 36-263 |
| Cow position: | chr12:37770873-37770635 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 189 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 36, 173 |
| Conread position: | 39-254 |
| Cow position: | chr12:26513983-26514210 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 30, 60 |
| Conread position: | 53-263 |
| Cow position: | chr12:40110361-40110149 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 20, 85 |
| Conread position: | 58-266 |
| Cow position: | chr12:36954409-36954618 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 36, 11 |
| Conread position: | 70-266 |
| Cow position: | chr12:5800984-5800792 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 112, 14 |
| Conread position: | 87-266 |
| Cow position: | chr12:22047409-22047226 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 95, 70 |
| Conread position: | 96-231 |
| Cow position: | chr12:2670192-2670056 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 111-266 |
| Cow position: | chr12:15938353-15938510 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 71, 106 |
Show alignments to all cow chromosomes.