Cow genome map
| Conread name: | Pig4-TMW8010I17 |
| Conread position: | 1-266 |
| Cow position: | chr21:44825757-44826025 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 80, 27 |
| Conread position: | 12-267 |
| Cow position: | chr21:22861124-22860859 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 227 |
| Conread position: | 13-180 |
| Cow position: | chr21:22014311-22014133 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 59, 118 |
| Conread position: | 13-202 |
| Cow position: | chr21:44214247-44214048 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 59, 22 |
| Conread position: | 13-218 |
| Cow position: | chr21:44515385-44515172 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 171 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 59, 145 |
| Conread position: | 13-229 |
| Cow position: | chr21:9940067-9940298 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 13-234 |
| Cow position: | chr21:31253654-31253435 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 60, 30 |
| Conread position: | 13-235 |
| Cow position: | chr21:10601254-10601483 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 59, 134 |
| Conread position: | 13-237 |
| Cow position: | chr21:4904846-4905080 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 13-237 |
| Cow position: | chr21:36297614-36297378 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 183 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 13-238 |
| Cow position: | chr21:17856665-17856435 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 163 |
| Conread position: | 13-238 |
| Cow position: | chr21:30222466-30222233 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 144 |
| Conread position: | 13-238 |
| Cow position: | chr21:31662588-31662352 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 13-238 |
| Cow position: | chr21:42135495-42135732 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 13-238 |
| Cow position: | chr21:47464997-47465230 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 177 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 59, 182 |
| Conread position: | 13-240 |
| Cow position: | chr21:2657930-2657704 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 51, 58 |
| Conread position: | 13-254 |
| Cow position: | chr21:42384629-42384376 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 13-260 |
| Cow position: | chr21:20260198-20260456 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 13-262 |
| Cow position: | chr21:37299583-37299332 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 203 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 62, 127 |
| Conread position: | 13-263 |
| Cow position: | chr21:28924230-28923978 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 59, 132 |
| Conread position: | 13-264 |
| Cow position: | chr21:4399924-4399660 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 73, 219 |
| Conread position: | 13-264 |
| Cow position: | chr21:9416372-9416103 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 15, 61 |
| Conread position: | 13-264 |
| Cow position: | chr21:13488648-13488380 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 208 |
| Conread position: | 13-264 |
| Cow position: | chr21:24642641-24642380 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 60, 20 |
| Conread position: | 13-264 |
| Cow position: | chr21:33729551-33729295 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 47, 60 |
| Conread position: | 13-264 |
| Cow position: | chr21:37344980-37345241 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 73, 61 |
| Conread position: | 13-265 |
| Cow position: | chr21:643445-643193 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 203 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 60, 72 |
| Conread position: | 13-265 |
| Cow position: | chr21:29214039-29214289 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 106 |
| Conread position: | 13-265 |
| Cow position: | chr21:42540101-42540361 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 59, 124 |
| Conread position: | 13-266 |
| Cow position: | chr21:641708-641443 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 196 |
| Conread position: | 13-266 |
| Cow position: | chr21:802196-802435 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 83 |
| Conread position: | 13-266 |
| Cow position: | chr21:3498614-3498357 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 46, 59 |
| Conread position: | 13-266 |
| Cow position: | chr21:3585247-3585500 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 188 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 60, 115 |
| Conread position: | 13-266 |
| Cow position: | chr21:8549802-8549536 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 57, 34 |
| Conread position: | 13-266 |
| Cow position: | chr21:8618385-8618133 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 46, 60 |
| Conread position: | 13-266 |
| Cow position: | chr21:11644845-11645110 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 204 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 68, 198 |
| Conread position: | 13-266 |
| Cow position: | chr21:16187686-16187947 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 198 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 59, 124 |
| Conread position: | 13-266 |
| Cow position: | chr21:22856339-22856073 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 199 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 72, 40 |
| Conread position: | 13-266 |
| Cow position: | chr21:30848820-30849081 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 55, 199 |
| Conread position: | 13-266 |
| Cow position: | chr21:32559244-32559495 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 131 |
| Conread position: | 13-266 |
| Cow position: | chr21:33263965-33263709 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 200 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 60, 126 |
| Conread position: | 13-266 |
| Cow position: | chr21:35354652-35354396 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 194 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 59, 234 |
| Conread position: | 13-266 |
| Cow position: | chr21:38121222-38120966 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 59, 131 |
| Conread position: | 13-266 |
| Cow position: | chr21:41878592-41878335 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 60, 214 |
| Conread position: | 13-266 |
| Cow position: | chr21:46144080-46143802 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 197 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 59, 215 |
| Conread position: | 13-267 |
| Cow position: | chr21:18289784-18289520 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 57, 160 |
| Conread position: | 13-267 |
| Cow position: | chr21:19363338-19363606 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 203 |
| Conread position: | 13-267 |
| Cow position: | chr21:34654194-34653939 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 47 |
| Conread position: | 13-282 |
| Cow position: | chr21:9990631-9990353 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 207 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 60, 72 |
| Conread position: | 13-282 |
| Cow position: | chr21:18844891-18845176 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 210 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 59, 270 |
| Conread position: | 14-266 |
| Cow position: | chr21:33210308-33210057 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 73 |
| Conread position: | 14-267 |
| Cow position: | chr21:28442852-28442602 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 190 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 58, 88 |
| Conread position: | 15-244 |
| Cow position: | chr21:11740000-11740231 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 57, 156 |
| Conread position: | 15-263 |
| Cow position: | chr21:41590446-41590695 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 58, 116 |
| Conread position: | 15-266 |
| Cow position: | chr21:724766-725033 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 22 |
| Conread position: | 15-266 |
| Cow position: | chr21:23149902-23150161 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 194 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 76, 151 |
| Conread position: | 15-266 |
| Cow position: | chr21:24131188-24130939 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 122, 79 |
| Conread position: | 16-266 |
| Cow position: | chr21:20262217-20262475 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 60 |
| Conread position: | 18-266 |
| Cow position: | chr21:33350857-33350601 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 54, 65 |
| Conread position: | 22-237 |
| Cow position: | chr21:27810502-27810297 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 171 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 22-262 |
| Cow position: | chr21:44733061-44733299 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 191 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 53, 133 |
| Conread position: | 24-264 |
| Cow position: | chr21:2679667-2679413 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 194 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 48, 104 |
| Conread position: | 24-266 |
| Cow position: | chr21:5392425-5392684 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 176 |
| Conread position: | 24-266 |
| Cow position: | chr21:37480065-37479815 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 97 |
| Conread position: | 30-266 |
| Cow position: | chr21:17175250-17175003 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 43, 13 |
| Conread position: | 32-266 |
| Cow position: | chr21:18041745-18041984 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 213 |
| Conread position: | 32-266 |
| Cow position: | chr21:25764738-25764493 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 40, 95 |
| Conread position: | 33-263 |
| Cow position: | chr21:7673224-7672994 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 39, 126 |
| Conread position: | 33-266 |
| Cow position: | chr21:29485083-29484842 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 191 |
| Conread position: | 34-281 |
| Cow position: | chr21:12723255-12723002 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 200 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 37, 50 |
| Conread position: | 37-266 |
| Cow position: | chr21:39888652-39888885 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 36, 200 |
| Conread position: | 47-266 |
| Cow position: | chr21:45375699-45375474 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 33, 7 |
| Conread position: | 54-267 |
| Cow position: | chr21:19083519-19083743 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 58-238 |
| Cow position: | chr21:31701882-31702065 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 15, 148 |
| Conread position: | 60-266 |
| Cow position: | chr21:30990204-30990410 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 165 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 13, 80 |
| Conread position: | 89-237 |
| Cow position: | chr21:36280044-36279892 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 7, 0 |
Show alignments to all cow chromosomes.