Cow genome map

Conread name: Pig4-TMW8010I17

Conread position: 1-233
Cow position: chr5:56877572-56877343 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 184
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 69, 22

Conread position: 1-238
Cow position: chr5:74580880-74580646 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 180
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 91, 13

Conread position: 1-253
Cow position: chr5:30629065-30629324 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 11

Conread position: 2-287
Cow position: chr5:50600138-50599853 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 12

Conread position: 6-266
Cow position: chr5:34638974-34638706 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 224

Conread position: 13-144
Cow position: chr5:56338938-56339074 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 108
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 59, 128

Conread position: 13-150
Cow position: chr5:59626888-59627036 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 119
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 59, 0

Conread position: 13-186
Cow position: chr5:17554948-17555126 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 137
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 27, 119

Conread position: 13-192
Cow position: chr5:54375419-54375611 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 140
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 59, 0

Conread position: 13-197
Cow position: chr5:14920847-14921039 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 139
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 80, 124

Conread position: 13-206
Cow position: chr5:19523983-19523779 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 148
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 57, 0

Conread position: 13-218
Cow position: chr5:44726251-44726456 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 158
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 59, 82

Conread position: 13-222
Cow position: chr5:44446782-44447002 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 174
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 59, 0

Conread position: 13-223
Cow position: chr5:64592012-64592227 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 154
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 59, 124

Conread position: 13-224
Cow position: chr5:66366592-66366381 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 164
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 59, 15

Conread position: 13-229
Cow position: chr5:64026936-64027149 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 169
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 59, 83

Conread position: 13-230
Cow position: chr5:25035175-25035384 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 23

Conread position: 13-234
Cow position: chr5:20422110-20422325 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 176
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 56, 23

Conread position: 13-234
Cow position: chr5:31144704-31144933 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 182
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 59, 122

Conread position: 13-238
Cow position: chr5:14629727-14629962 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 184
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 58, 233

Conread position: 13-238
Cow position: chr5:30276773-30276547 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 0

Conread position: 13-238
Cow position: chr5:30949832-30950066 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 180
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 59, 124

Conread position: 13-238
Cow position: chr5:42050635-42050401 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 177
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 85, 124

Conread position: 13-238
Cow position: chr5:43992407-43992174 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 168
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 59, 203

Conread position: 13-238
Cow position: chr5:50821866-50821632 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 0

Conread position: 13-238
Cow position: chr5:55966797-55967029 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 0

Conread position: 13-238
Cow position: chr5:61809603-61809835 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 161
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 59, 110

Conread position: 13-238
Cow position: chr5:65967648-65967878 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 186
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 63, 125

Conread position: 13-261
Cow position: chr5:29903440-29903697 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 0

Conread position: 13-264
Cow position: chr5:7755486-7755730 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 91

Conread position: 13-264
Cow position: chr5:20407595-20407844 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 190
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 59, 81

Conread position: 13-264
Cow position: chr5:24349190-24348934 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 195
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 57, 225

Conread position: 13-264
Cow position: chr5:45845608-45845873 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 202
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 59, 132

Conread position: 13-264
Cow position: chr5:57074248-57074512 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 204
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 59, 125

Conread position: 13-265
Cow position: chr5:35685018-35684756 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 204
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 63, 23

Conread position: 13-265
Cow position: chr5:57935025-57935292 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 0

Conread position: 13-266
Cow position: chr5:8820930-8821191 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 202
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 60, 24

Conread position: 13-266
Cow position: chr5:14314611-14314342 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 0

Conread position: 13-266
Cow position: chr5:15363965-15363711 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 185
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 59, 95

Conread position: 13-266
Cow position: chr5:15598152-15598413 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 193

Conread position: 13-266
Cow position: chr5:21617541-21617276 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 159

Conread position: 13-266
Cow position: chr5:23168743-23168998 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 196
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 59, 150

Conread position: 13-266
Cow position: chr5:30253824-30253562 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 0

Conread position: 13-266
Cow position: chr5:32696739-32696992 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 196
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 59, 136

Conread position: 13-266
Cow position: chr5:37646460-37646730 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 203
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 59, 187

Conread position: 13-266
Cow position: chr5:39094633-39094374 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 185
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 48, 60

Conread position: 13-266
Cow position: chr5:44053970-44054217 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 184
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 233, 79

Conread position: 13-266
Cow position: chr5:44796650-44796898 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 182
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 56, 115

Conread position: 13-266
Cow position: chr5:45804143-45803881 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 148

Conread position: 13-266
Cow position: chr5:47316891-47317149 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 177
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 57, 202

Conread position: 13-266
Cow position: chr5:47601895-47601637 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 86

Conread position: 13-266
Cow position: chr5:56070942-56070673 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 16

Conread position: 13-266
Cow position: chr5:58793524-58793794 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 201
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 59, 202

Conread position: 13-266
Cow position: chr5:63992089-63992342 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 186
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 69, 132

Conread position: 13-266
Cow position: chr5:64176043-64176300 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 20

Conread position: 13-266
Cow position: chr5:64321837-64321569 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 165

Conread position: 13-266
Cow position: chr5:65941167-65941433 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 125

Conread position: 13-266
Cow position: chr5:66257719-66257462 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 200
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 59, 16

Conread position: 13-266
Cow position: chr5:69337903-69337648 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 200
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 59, 119

Conread position: 13-266
Cow position: chr5:74003552-74003807 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 186
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 78, 27

Conread position: 13-267
Cow position: chr5:7044622-7044891 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 0

Conread position: 13-267
Cow position: chr5:12351724-12351962 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 0

Conread position: 13-267
Cow position: chr5:37814709-37814443 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 166
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 113, 167

Conread position: 13-278
Cow position: chr5:60599121-60599366 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 190
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 59, 83

Conread position: 14-222
Cow position: chr5:991546-991332 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 175
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 0

Conread position: 14-223
Cow position: chr5:30152953-30153161 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 149
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 56, 50

Conread position: 14-254
Cow position: chr5:56014813-56014567 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 184
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 58, 130

Conread position: 14-266
Cow position: chr5:21828950-21828685 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 0

Conread position: 14-266
Cow position: chr5:40109574-40109322 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 198
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 62, 10

Conread position: 15-166
Cow position: chr5:69636305-69636157 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 119
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 57, 81

Conread position: 15-195
Cow position: chr5:43371114-43371305 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 139
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 49, 57

Conread position: 15-238
Cow position: chr5:46512687-46512913 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 0

Conread position: 15-264
Cow position: chr5:50637902-50637652 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 184
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 58, 35

Conread position: 15-266
Cow position: chr5:43929655-43929913 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 194
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 58, 41

Conread position: 15-266
Cow position: chr5:46509784-46510046 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 199
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 60, 160

Conread position: 15-266
Cow position: chr5:52644999-52645255 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 178
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 57, 223

Conread position: 15-266
Cow position: chr5:53835798-53835535 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 175

Conread position: 15-266
Cow position: chr5:59325761-59326008 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 177
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 42, 31

Conread position: 20-188
Cow position: chr5:73418214-73418382 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 127
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 58, 42

Conread position: 25-266
Cow position: chr5:9894053-9894305 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 7

Conread position: 28-266
Cow position: chr5:20554686-20554929 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 168
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 42, 150

Conread position: 29-228
Cow position: chr5:4166709-4166522 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 146
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 43, 82

Conread position: 29-262
Cow position: chr5:62638971-62638730 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 175
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 53, 74

Conread position: 29-266
Cow position: chr5:64823244-64823492 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 195
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 44, 126

Conread position: 33-193
Cow position: chr5:62378846-62378686 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 124
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 39, 54

Conread position: 33-233
Cow position: chr5:70951817-70952021 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 164
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 0

Conread position: 37-265
Cow position: chr5:44028244-44028480 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 184
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 35, 125

Conread position: 37-266
Cow position: chr5:17768091-17768323 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 179
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 42, 156

Conread position: 43-264
Cow position: chr5:4797269-4797488 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 173
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 5, 61

Conread position: 45-266
Cow position: chr5:34916182-34915962 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 177
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 65

Conread position: 48-200
Cow position: chr5:55849696-55849855 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 118
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 36, 0

Conread position: 62-266
Cow position: chr5:19470156-19470366 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 165
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 11, 93

Conread position: 87-266
Cow position: chr5:29681085-29680899 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 137
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 15, 164

Conread position: 87-266
Cow position: chr5:51357498-51357683 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 151
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 16, 0

Conread position: 97-266
Cow position: chr5:60520153-60519987 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 140
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 104, 0

Conread position: 104-266
Cow position: chr5:5848205-5848366 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 130
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 33, 121

Conread position: 122-266
Cow position: chr5:46322844-46322991 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 117
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 57, 70

Show alignments to all cow chromosomes.