Cow genome map
| Conread name: | Pig4-TMW8010I17 |
| Conread position: | 1-215 |
| Cow position: | chr9:43875755-43875540 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 71, 14 |
| Conread position: | 1-222 |
| Cow position: | chr9:34689633-34689414 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 80, 14 |
| Conread position: | 1-266 |
| Cow position: | chr9:43757501-43757757 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 198 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 18, 40 |
| Conread position: | 1-266 |
| Cow position: | chr9:52578574-52578299 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 210 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 71, 11 |
| Conread position: | 10-265 |
| Cow position: | chr9:33218985-33218719 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 74, 144 |
| Conread position: | 12-178 |
| Cow position: | chr9:6596265-6596090 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 12-263 |
| Cow position: | chr9:33119917-33119651 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 13-147 |
| Cow position: | chr9:23956008-23955870 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 13-150 |
| Cow position: | chr9:33584713-33584566 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 13-170 |
| Cow position: | chr9:6189393-6189235 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 56, 90 |
| Conread position: | 13-191 |
| Cow position: | chr9:52267783-52267599 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 138 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 59, 23 |
| Conread position: | 13-193 |
| Cow position: | chr9:39011497-39011317 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 59, 117 |
| Conread position: | 13-203 |
| Cow position: | chr9:50202545-50202739 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 13-204 |
| Cow position: | chr9:43936917-43937110 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 13-207 |
| Cow position: | chr9:25556944-25557139 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 10, 15 |
| Conread position: | 13-212 |
| Cow position: | chr9:49293171-49292970 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 59, 192 |
| Conread position: | 13-220 |
| Cow position: | chr9:9406081-9405864 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 61, 129 |
| Conread position: | 13-226 |
| Cow position: | chr9:41728230-41728448 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 147 |
| Conread position: | 13-233 |
| Cow position: | chr9:4341187-4340970 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 83 |
| Conread position: | 13-233 |
| Cow position: | chr9:53139160-53138931 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 13-238 |
| Cow position: | chr9:19493494-19493258 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 181 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 13-238 |
| Cow position: | chr9:48628000-48628232 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 181 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 62, 125 |
| Conread position: | 13-238 |
| Cow position: | chr9:58614466-58614694 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 65, 22 |
| Conread position: | 13-258 |
| Cow position: | chr9:1938102-1938352 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 59, 130 |
| Conread position: | 13-264 |
| Cow position: | chr9:13169691-13169436 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 199 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 58, 153 |
| Conread position: | 13-264 |
| Cow position: | chr9:21030280-21030548 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 192 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 13-264 |
| Cow position: | chr9:36827107-36827357 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 60, 122 |
| Conread position: | 13-265 |
| Cow position: | chr9:4268010-4267747 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 109 |
| Conread position: | 13-265 |
| Cow position: | chr9:37069586-37069336 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 22, 81 |
| Conread position: | 13-266 |
| Cow position: | chr9:3070440-3070189 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 84, 57 |
| Conread position: | 13-266 |
| Cow position: | chr9:3220108-3220357 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 60, 172 |
| Conread position: | 13-266 |
| Cow position: | chr9:7634243-7634501 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 209 |
| Conread position: | 13-266 |
| Cow position: | chr9:9595980-9595720 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 193 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 13-266 |
| Cow position: | chr9:10144503-10144238 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 22 |
| Conread position: | 13-266 |
| Cow position: | chr9:17740969-17740710 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 5 |
| Conread position: | 13-266 |
| Cow position: | chr9:17872138-17871873 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 203 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 59, 201 |
| Conread position: | 13-266 |
| Cow position: | chr9:18073124-18072883 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 194 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 222, 19 |
| Conread position: | 13-266 |
| Cow position: | chr9:24887178-24887434 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 188 |
| Conread position: | 13-266 |
| Cow position: | chr9:26279197-26278939 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 163 |
| Conread position: | 13-266 |
| Cow position: | chr9:33597958-33598215 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 189 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 13-266 |
| Cow position: | chr9:33823090-33823332 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 191 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 59, 82 |
| Conread position: | 13-266 |
| Cow position: | chr9:34286771-34287028 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 173 |
| Conread position: | 13-266 |
| Cow position: | chr9:38343862-38344128 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 16 |
| Conread position: | 13-266 |
| Cow position: | chr9:43870947-43871206 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 193 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 59, 223 |
| Conread position: | 13-266 |
| Cow position: | chr9:44832082-44831821 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 63, 19 |
| Conread position: | 13-266 |
| Cow position: | chr9:46316810-46316554 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 22 |
| Conread position: | 13-266 |
| Cow position: | chr9:50081068-50080812 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 186 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 13-266 |
| Cow position: | chr9:55256580-55256315 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 13-266 |
| Cow position: | chr9:56453310-56453566 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 200 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 74, 40 |
| Conread position: | 13-266 |
| Cow position: | chr9:59013367-59013101 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 195 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 64, 23 |
| Conread position: | 13-266 |
| Cow position: | chr9:62656775-62657026 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 12, 120 |
| Conread position: | 13-267 |
| Cow position: | chr9:34374952-34374694 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 70 |
| Conread position: | 13-282 |
| Cow position: | chr9:28726752-28726472 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 205 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 59, 213 |
| Conread position: | 14-202 |
| Cow position: | chr9:5263472-5263669 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 58, 23 |
| Conread position: | 14-230 |
| Cow position: | chr9:12910428-12910202 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 177 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 14-266 |
| Cow position: | chr9:6089061-6089331 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 59, 137 |
| Conread position: | 14-266 |
| Cow position: | chr9:34742751-34742494 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 58, 141 |
| Conread position: | 15-266 |
| Cow position: | chr9:26344994-26344750 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 87, 154 |
| Conread position: | 15-266 |
| Cow position: | chr9:34958082-34957817 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 135 |
| Conread position: | 20-266 |
| Cow position: | chr9:5399716-5399953 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 50, 17 |
| Conread position: | 29-266 |
| Cow position: | chr9:31079094-31078848 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 173 |
| Conread position: | 29-266 |
| Cow position: | chr9:48118702-48118468 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 41, 125 |
| Conread position: | 33-266 |
| Cow position: | chr9:18380854-18381093 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 65, 132 |
| Conread position: | 57-266 |
| Cow position: | chr9:11299674-11299462 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 186 |
| Conread position: | 71-266 |
| Cow position: | chr9:32812380-32812582 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 37, 153 |
| Conread position: | 86-258 |
| Cow position: | chr9:49403809-49403978 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 15, 66 |
| Conread position: | 91-264 |
| Cow position: | chr9:31292746-31292920 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 145 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 149, 0 |
| Conread position: | 95-265 |
| Cow position: | chr9:9461594-9461422 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 96-219 |
| Cow position: | chr9:28452095-28451972 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 154-266 |
| Cow position: | chr9:58131607-58131490 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 82, 0 |
Show alignments to all cow chromosomes.