Cow genome map
| Conread name: | Pig4-TMW8010I17 |
| Conread position: | 1-203 |
| Cow position: | chrX:42927732-42927933 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 161 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 76, 12 |
| Conread position: | 1-260 |
| Cow position: | chrX:4996679-4996434 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 197 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 71, 14 |
| Conread position: | 1-265 |
| Cow position: | chrX:22074892-22074623 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 209 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 13, 28 |
| Conread position: | 7-202 |
| Cow position: | chrX:9650933-9651138 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 7, 138 |
| Conread position: | 9-266 |
| Cow position: | chrX:20710163-20709893 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 11-239 |
| Cow position: | chrX:34792225-34792457 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 199 |
| Conread position: | 12-226 |
| Cow position: | chrX:41027244-41027020 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 60, 176 |
| Conread position: | 12-265 |
| Cow position: | chrX:30543199-30543468 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 60, 177 |
| Conread position: | 13-138 |
| Cow position: | chrX:22392900-22393035 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 13-142 |
| Cow position: | chrX:25328532-25328659 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 59, 51 |
| Conread position: | 13-154 |
| Cow position: | chrX:46429735-46429885 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 59, 132 |
| Conread position: | 13-181 |
| Cow position: | chrX:1466246-1466069 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 13-185 |
| Cow position: | chrX:34836980-34837150 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 62, 70 |
| Conread position: | 13-214 |
| Cow position: | chrX:40826667-40826880 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 53, 75 |
| Conread position: | 13-233 |
| Cow position: | chrX:5919576-5919352 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 55, 145 |
| Conread position: | 13-233 |
| Cow position: | chrX:34314108-34313889 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 85, 71 |
| Conread position: | 13-237 |
| Cow position: | chrX:10959311-10959545 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 13-237 |
| Cow position: | chrX:29680177-29680409 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 177 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 13-238 |
| Cow position: | chrX:8869318-8869551 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 172 |
| Conread position: | 13-238 |
| Cow position: | chrX:37072473-37072259 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 13-238 |
| Cow position: | chrX:40269576-40269339 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 13-251 |
| Cow position: | chrX:20584412-20584160 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 13-261 |
| Cow position: | chrX:34662762-34663017 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 178 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 54, 208 |
| Conread position: | 13-261 |
| Cow position: | chrX:35885643-35885903 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 13-263 |
| Cow position: | chrX:7571989-7571731 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 198 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 59, 175 |
| Conread position: | 13-264 |
| Cow position: | chrX:13913159-13912904 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 204 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 60, 141 |
| Conread position: | 13-266 |
| Cow position: | chrX:161496-161243 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 181 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 59, 177 |
| Conread position: | 13-266 |
| Cow position: | chrX:6278414-6278684 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 201 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 13-266 |
| Cow position: | chrX:7646335-7646082 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 188 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 59, 121 |
| Conread position: | 13-266 |
| Cow position: | chrX:9201632-9201368 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 13-266 |
| Cow position: | chrX:11073107-11073367 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 197 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 59, 122 |
| Conread position: | 13-266 |
| Cow position: | chrX:11656165-11655910 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 82 |
| Conread position: | 13-266 |
| Cow position: | chrX:12979750-12980009 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 196 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 56, 82 |
| Conread position: | 13-266 |
| Cow position: | chrX:13177392-13177643 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 86 |
| Conread position: | 13-266 |
| Cow position: | chrX:14883872-14884140 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 13-266 |
| Cow position: | chrX:17726059-17725796 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 13-266 |
| Cow position: | chrX:20339808-20340069 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 97, 179 |
| Conread position: | 13-266 |
| Cow position: | chrX:24424317-24424566 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 196 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 59, 76 |
| Conread position: | 13-266 |
| Cow position: | chrX:27431834-27432097 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 13-266 |
| Cow position: | chrX:27705670-27705411 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 82, 213 |
| Conread position: | 13-266 |
| Cow position: | chrX:28878090-28878337 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 60, 182 |
| Conread position: | 13-266 |
| Cow position: | chrX:29542133-29542397 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 13-266 |
| Cow position: | chrX:31312113-31311847 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 131 |
| Conread position: | 13-266 |
| Cow position: | chrX:31436558-31436304 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 123 |
| Conread position: | 13-266 |
| Cow position: | chrX:34503004-34502740 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 195 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 13-266 |
| Cow position: | chrX:35224380-35224121 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 197 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 56, 187 |
| Conread position: | 13-266 |
| Cow position: | chrX:36068099-36067841 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 199 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 59, 169 |
| Conread position: | 13-266 |
| Cow position: | chrX:36976035-36975771 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 81, 130 |
| Conread position: | 13-266 |
| Cow position: | chrX:37232491-37232231 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 70 |
| Conread position: | 13-266 |
| Cow position: | chrX:37781025-37781296 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 13-266 |
| Cow position: | chrX:39126410-39126158 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 59, 101 |
| Conread position: | 13-266 |
| Cow position: | chrX:40557595-40557854 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 233 |
| Conread position: | 13-266 |
| Cow position: | chrX:41123143-41122893 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 60, 40 |
| Conread position: | 13-266 |
| Cow position: | chrX:42469857-42470115 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 39, 128 |
| Conread position: | 13-266 |
| Cow position: | chrX:45414220-45414478 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 13-282 |
| Cow position: | chrX:9252079-9252376 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 14-150 |
| Cow position: | chrX:20957321-20957187 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 58, 72 |
| Conread position: | 14-183 |
| Cow position: | chrX:47345410-47345240 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 14-261 |
| Cow position: | chrX:13647702-13647957 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 119 |
| Conread position: | 14-266 |
| Cow position: | chrX:45846184-45845917 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 200 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 64, 48 |
| Conread position: | 15-166 |
| Cow position: | chrX:22115235-22115394 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 123 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 15-266 |
| Cow position: | chrX:17795063-17794807 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 188 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 55, 85 |
| Conread position: | 15-266 |
| Cow position: | chrX:34377024-34376777 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 58, 68 |
| Conread position: | 17-266 |
| Cow position: | chrX:38642329-38642079 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 191 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 55, 81 |
| Conread position: | 24-266 |
| Cow position: | chrX:13785287-13785536 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 223 |
| Conread position: | 27-266 |
| Cow position: | chrX:26875811-26876061 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 41-266 |
| Cow position: | chrX:6414103-6413868 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 182 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 31, 224 |
| Conread position: | 66-283 |
| Cow position: | chrX:18651019-18651241 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 174, 29 |
| Conread position: | 86-266 |
| Cow position: | chrX:41743915-41743734 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 96, 132 |
| Conread position: | 99-263 |
| Cow position: | chrX:35387912-35388081 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 143 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 141, 0 |
| Conread position: | 115-266 |
| Cow position: | chrX:9997361-9997512 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 130 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.