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Cow genome map

           
Conread name:
           
Pig4-TMW8013E01
        

               
Conread position:
               
1-172
               

               
Cow position:
               
chr6:32665168-32665340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
1-174
               

               
Cow position:
               
chr6:40139558-40139386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
71, 85
               

               
Conread position:
               
1-175
               

               
Cow position:
               
chr6:6100138-6099964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
64, 59
               

               
Conread position:
               
1-175
               

               
Cow position:
               
chr6:7104498-7104324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
31, 35
               

               
Conread position:
               
1-175
               

               
Cow position:
               
chr6:34476018-34475845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
71, 13
               

               
Conread position:
               
1-175
               

               
Cow position:
               
chr6:38440551-38440732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
62, 92
               

               
Conread position:
               
1-175
               

               
Cow position:
               
chr6:50983771-50983946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
71, 86
               

               
Conread position:
               
1-175
               

               
Cow position:
               
chr6:59620228-59620404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
1-181
               

               
Cow position:
               
chr6:52401378-52401562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
45, 93
               

               
Conread position:
               
1-185
               

               
Cow position:
               
chr6:47988649-47988834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
64, 85
               

               
Conread position:
               
1-190
               

               
Cow position:
               
chr6:17344933-17345128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
140, 81
               

               
Conread position:
               
1-190
               

               
Cow position:
               
chr6:21541662-21541858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
64, 91
               

               
Conread position:
               
1-191
               

               
Cow position:
               
chr6:68048839-68049030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
64, 85
               

               
Conread position:
               
1-192
               

               
Cow position:
               
chr6:67304369-67304557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
64, 85
               

               
Conread position:
               
1-195
               

               
Cow position:
               
chr6:35435185-35435387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
69, 90
               

               
Conread position:
               
1-200
               

               
Cow position:
               
chr6:52697354-52697557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
1-201
               

               
Cow position:
               
chr6:479284-479488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
1-201
               

               
Cow position:
               
chr6:539874-540071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
71, 82
               

               
Conread position:
               
1-202
               

               
Cow position:
               
chr6:3484668-3484463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
1-204
               

               
Cow position:
               
chr6:63252311-63252100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
71, 86
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr6:21396480-21396276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
64, 86
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr6:28636440-28636232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
1-206
               

               
Cow position:
               
chr6:42131239-42131019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr6:46246507-46246304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
71, 129
               

               
Conread position:
               
1-213
               

               
Cow position:
               
chr6:44598313-44598097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr6:65818493-65818275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
1-219
               

               
Cow position:
               
chr6:19707167-19707389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
1-233
               

               
Cow position:
               
chr6:59296373-59296601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
71, 85
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr6:63094395-63094635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
46, 72
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chr6:58370155-58370430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
66, 234
               

               
Conread position:
               
1-266
               

               
Cow position:
               
chr6:20245672-20245940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 86
               

               
Conread position:
               
1-280
               

               
Cow position:
               
chr6:7009331-7009587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
77, 63
               

               
Conread position:
               
1-288
               

               
Cow position:
               
chr6:58390286-58389993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
85, 224
               

               
Conread position:
               
1-290
               

               
Cow position:
               
chr6:1406415-1406123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
85, 224
               

               
Conread position:
               
1-292
               

               
Cow position:
               
chr6:19170873-19171167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
71, 221
               

               
Conread position:
               
1-292
               

               
Cow position:
               
chr6:47773635-47773330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
69, 92
               

               
Conread position:
               
1-292
               

               
Cow position:
               
chr6:65016301-65016008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
85, 95
               

               
Conread position:
               
1-305
               

               
Cow position:
               
chr6:19328253-19327954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
53, 96
               

               
Conread position:
               
1-305
               

               
Cow position:
               
chr6:26667286-26666981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
85, 224
               

               
Conread position:
               
1-305
               

               
Cow position:
               
chr6:51150634-51150937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
85, 225
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chr6:33509170-33509483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 85
               

               
Conread position:
               
1-320
               

               
Cow position:
               
chr6:43039650-43039973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
85, 224
               

               
Conread position:
               
1-320
               

               
Cow position:
               
chr6:45155711-45156019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
85, 61
               

               
Conread position:
               
1-322
               

               
Cow position:
               
chr6:8599376-8599701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 82
               

               
Conread position:
               
1-329
               

               
Cow position:
               
chr6:27093849-27093513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
85, 220
               

               
Conread position:
               
1-329
               

               
Cow position:
               
chr6:28000658-28000323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
85, 51
               

               
Conread position:
               
1-329
               

               
Cow position:
               
chr6:41158583-41158246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
85, 224
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chr6:10682330-10682695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
51, 87
               

               
Conread position:
               
1-379
               

               
Cow position:
               
chr6:18911996-18911608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
85, 217
               

               
Conread position:
               
1-386
               

               
Cow position:
               
chr6:54886877-54886480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
85, 224
               

               
Conread position:
               
1-392
               

               
Cow position:
               
chr6:21312167-21311764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 25
               

               
Conread position:
               
1-392
               

               
Cow position:
               
chr6:25358665-25359058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 86
               

               
Conread position:
               
1-393
               

               
Cow position:
               
chr6:1784177-1783792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 86
               

               
Conread position:
               
1-393
               

               
Cow position:
               
chr6:19570193-19569797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
182, 77
               

               
Conread position:
               
1-393
               

               
Cow position:
               
chr6:23891130-23891539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
61, 92
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr6:10013535-10013943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 224
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr6:13531402-13531810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 224
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr6:15137435-15137028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 47
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr6:17632032-17631623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
45, 52
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr6:23567870-23567462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
85, 224
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr6:24262855-24263263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
85, 224
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr6:28700827-28700419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
85, 224
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr6:41193085-41193493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
85, 224
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr6:51869675-51870080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
171, 83
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr6:56080179-56079773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
85, 224
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr6:60066061-60066469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
85, 224
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr6:63177858-63178266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 224
               

               
Conread position:
               
1-415
               

               
Cow position:
               
chr6:53178227-53178642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 222
               

               
Conread position:
               
1-417
               

               
Cow position:
               
chr6:2607202-2607623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 226
               

               
Conread position:
               
1-417
               

               
Cow position:
               
chr6:10332520-10332082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 233
               

               
Conread position:
               
1-419
               

               
Cow position:
               
chr6:9737526-9737104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 82
               

               
Conread position:
               
1-419
               

               
Cow position:
               
chr6:18803321-18802893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 224
               

               
Conread position:
               
1-419
               

               
Cow position:
               
chr6:46391283-46391706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 87
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr6:25789999-25789563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 58
               

               
Conread position:
               
1-434
               

               
Cow position:
               
chr6:48567757-48567323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 227
               

               
Conread position:
               
1-451
               

               
Cow position:
               
chr6:4864947-4864507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 26
               

               
Conread position:
               
1-451
               

               
Cow position:
               
chr6:58075810-58076270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 92
               

               
Conread position:
               
1-454
               

               
Cow position:
               
chr6:3979073-3978619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 219
               

               
Conread position:
               
1-457
               

               
Cow position:
               
chr6:8636864-8637324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 98
               

               
Conread position:
               
1-458
               

               
Cow position:
               
chr6:16737609-16738066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 92
               

               
Conread position:
               
1-458
               

               
Cow position:
               
chr6:60456419-60456876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 87
               

               
Conread position:
               
1-461
               

               
Cow position:
               
chr6:9733243-9732789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 87
               

               
Conread position:
               
1-465
               

               
Cow position:
               
chr6:60877033-60877509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 221
               

               
Conread position:
               
1-467
               

               
Cow position:
               
chr6:13741286-13741757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 86
               

               
Conread position:
               
1-467
               

               
Cow position:
               
chr6:47540113-47540587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 225
               

               
Conread position:
               
1-476
               

               
Cow position:
               
chr6:66304250-66303775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 52
               

               
Conread position:
               
1-477
               

               
Cow position:
               
chr6:11169299-11169766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 20
               

               
Conread position:
               
1-478
               

               
Cow position:
               
chr6:20215658-20215169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 224
               

               
Conread position:
               
1-478
               

               
Cow position:
               
chr6:34075614-34076096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 60
               

               
Conread position:
               
1-479
               

               
Cow position:
               
chr6:5302810-5302351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 85
               

               
Conread position:
               
1-480
               

               
Cow position:
               
chr6:18987810-18988281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 13
               

               
Conread position:
               
1-480
               

               
Cow position:
               
chr6:27870343-27870848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
45, 92
               

               
Conread position:
               
1-482
               

               
Cow position:
               
chr6:2867722-2867235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
85, 224
               

               
Conread position:
               
1-482
               

               
Cow position:
               
chr6:12998154-12998641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
85, 224
               

               
Conread position:
               
1-482
               

               
Cow position:
               
chr6:14929182-14929651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
73, 63
               

               
Conread position:
               
1-482
               

               
Cow position:
               
chr6:19719308-19719797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
85, 238
               

               
Conread position:
               
1-482
               

               
Cow position:
               
chr6:31520176-31520663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
65, 58
               

               
Conread position:
               
1-482
               

               
Cow position:
               
chr6:31548841-31548356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 224
               

               
Conread position:
               
1-482
               

               
Cow position:
               
chr6:31568110-31567624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
71, 44
               

               
Conread position:
               
1-482
               

               
Cow position:
               
chr6:31752640-31753120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
85, 200
               

               
Conread position:
               
1-482
               

               
Cow position:
               
chr6:45591883-45592373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
85, 229
               

               
Conread position:
               
1-482
               

               
Cow position:
               
chr6:46224947-46224462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
85, 248
               

               
Conread position:
               
1-482
               

               
Cow position:
               
chr6:49794696-49795183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 224
               

               
Conread position:
               
1-482
               

               
Cow position:
               
chr6:56441342-56440855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 221
               

               
Conread position:
               
1-483
               

               
Cow position:
               
chr6:1770606-1770126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 106
               

               
Conread position:
               
1-483
               

               
Cow position:
               
chr6:9751461-9750982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 18
               

               
Conread position:
               
1-483
               

               
Cow position:
               
chr6:16699859-16700333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
324, 69
               

               
Conread position:
               
1-483
               

               
Cow position:
               
chr6:31636106-31635615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 93
               

               
Conread position:
               
1-483
               

               
Cow position:
               
chr6:35181658-35181185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 81
               

               
Conread position:
               
1-483
               

               
Cow position:
               
chr6:47339775-47339284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 94
               

               
Conread position:
               
1-483
               

               
Cow position:
               
chr6:51834991-51835471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 96
               

               
Conread position:
               
1-483
               

               
Cow position:
               
chr6:64431535-64432009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 82
               

               
Conread position:
               
1-484
               

               
Cow position:
               
chr6:24781981-24781482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 91
               

               
Conread position:
               
1-484
               

               
Cow position:
               
chr6:27852119-27851636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 72
               

               
Conread position:
               
1-484
               

               
Cow position:
               
chr6:44098676-44099160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 87
               

               
Conread position:
               
1-484
               

               
Cow position:
               
chr6:47026065-47026550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
61, 91
               

               
Conread position:
               
1-484
               

               
Cow position:
               
chr6:53933259-53932777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 14
               

               
Conread position:
               
1-484
               

               
Cow position:
               
chr6:55040629-55040141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 410
               

               
Conread position:
               
1-484
               

               
Cow position:
               
chr6:65910063-65910546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
85, 284
               

               
Conread position:
               
1-490
               

               
Cow position:
               
chr6:42481619-42482112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
85, 212
               

               
Conread position:
               
1-521
               

               
Cow position:
               
chr6:67544704-67544181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 221
               

               
Conread position:
               
2-175
               

               
Cow position:
               
chr6:30076534-30076355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
61, 21
               

               
Conread position:
               
2-175
               

               
Cow position:
               
chr6:30826469-30826289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
66, 91
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chr6:26914688-26914867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
50, 14
               

               
Conread position:
               
2-190
               

               
Cow position:
               
chr6:49733524-49733716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
53, 86
               

               
Conread position:
               
2-195
               

               
Cow position:
               
chr6:6459848-6460045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
45, 85
               

               
Conread position:
               
2-218
               

               
Cow position:
               
chr6:12648115-12648343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
61, 94
               

               
Conread position:
               
2-226
               

               
Cow position:
               
chr6:18955444-18955217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
63, 93
               

               
Conread position:
               
2-298
               

               
Cow position:
               
chr6:42106457-42106165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
63, 81
               

               
Conread position:
               
2-392
               

               
Cow position:
               
chr6:64426777-64427173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
42, 87
               

               
Conread position:
               
2-411
               

               
Cow position:
               
chr6:2012612-2013022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 40
               

               
Conread position:
               
2-457
               

               
Cow position:
               
chr6:23695587-23696046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 85
               

               
Conread position:
               
2-462
               

               
Cow position:
               
chr6:17414864-17414396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 85
               

               
Conread position:
               
2-477
               

               
Cow position:
               
chr6:46465417-46465887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 87
               

               
Conread position:
               
2-478
               

               
Cow position:
               
chr6:12550857-12551337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 85
               

               
Conread position:
               
2-479
               

               
Cow position:
               
chr6:46633852-46634321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 207
               

               
Conread position:
               
2-483
               

               
Cow position:
               
chr6:143770-143303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 135
               

               
Conread position:
               
2-483
               

               
Cow position:
               
chr6:606852-607335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 70
               

               
Conread position:
               
2-483
               

               
Cow position:
               
chr6:56842749-56843229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 85
               

               
Conread position:
               
4-145
               

               
Cow position:
               
chr6:53461431-53461291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
71, 60
               

               
Conread position:
               
4-146
               

               
Cow position:
               
chr6:15944109-15943960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
58, 89
               

               
Conread position:
               
4-174
               

               
Cow position:
               
chr6:49694030-49694197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
68, 75
               

               
Conread position:
               
4-175
               

               
Cow position:
               
chr6:240462-240637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
4-175
               

               
Cow position:
               
chr6:828093-827918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
57, 89
               

               
Conread position:
               
4-175
               

               
Cow position:
               
chr6:3928863-3929046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
53, 168
               

               
Conread position:
               
4-175
               

               
Cow position:
               
chr6:6038519-6038341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
64, 89
               

               
Conread position:
               
4-175
               

               
Cow position:
               
chr6:51581804-51581630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
22, 84
               

               
Conread position:
               
4-182
               

               
Cow position:
               
chr6:44098422-44098607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
4-190
               

               
Cow position:
               
chr6:18142721-18142901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
4-190
               

               
Cow position:
               
chr6:25223685-25223492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
65, 89
               

               
Conread position:
               
4-192
               

               
Cow position:
               
chr6:3118648-3118454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
58, 89
               

               
Conread position:
               
4-192
               

               
Cow position:
               
chr6:66873919-66874111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
61, 83
               

               
Conread position:
               
4-202
               

               
Cow position:
               
chr6:54865603-54865408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
66, 31
               

               
Conread position:
               
4-205
               

               
Cow position:
               
chr6:40157795-40157587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
42, 85
               

               
Conread position:
               
4-206
               

               
Cow position:
               
chr6:61136759-61136962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
61, 83
               

               
Conread position:
               
4-214
               

               
Cow position:
               
chr6:10706318-10706102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
57, 11
               

               
Conread position:
               
4-216
               

               
Cow position:
               
chr6:4903056-4902848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
68, 82
               

               
Conread position:
               
4-224
               

               
Cow position:
               
chr6:45661070-45661298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
4-228
               

               
Cow position:
               
chr6:19809270-19809494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
61, 204
               

               
Conread position:
               
4-258
               

               
Cow position:
               
chr6:55762981-55763235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
68, 83
               

               
Conread position:
               
4-290
               

               
Cow position:
               
chr6:50527244-50527535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
58, 89
               

               
Conread position:
               
4-299
               

               
Cow position:
               
chr6:40497162-40497466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
49, 90
               

               
Conread position:
               
4-300
               

               
Cow position:
               
chr6:4389452-4389739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 93
               

               
Conread position:
               
4-300
               

               
Cow position:
               
chr6:55573522-55573215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
42, 224
               

               
Conread position:
               
4-303
               

               
Cow position:
               
chr6:28503928-28504250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
65, 89
               

               
Conread position:
               
4-305
               

               
Cow position:
               
chr6:62323441-62323137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
82, 221
               

               
Conread position:
               
4-315
               

               
Cow position:
               
chr6:6079320-6078993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
36, 51
               

               
Conread position:
               
4-319
               

               
Cow position:
               
chr6:64039701-64040022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
59, 151
               

               
Conread position:
               
4-320
               

               
Cow position:
               
chr6:3885766-3885442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
71, 91
               

               
Conread position:
               
4-320
               

               
Cow position:
               
chr6:27173582-27173905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
82, 221
               

               
Conread position:
               
4-322
               

               
Cow position:
               
chr6:42420859-42421174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 59
               

               
Conread position:
               
4-323
               

               
Cow position:
               
chr6:60516321-60516648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 81
               

               
Conread position:
               
4-333
               

               
Cow position:
               
chr6:5501205-5500863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
59, 101
               

               
Conread position:
               
4-333
               

               
Cow position:
               
chr6:36918581-36918250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
58, 88
               

               
Conread position:
               
4-342
               

               
Cow position:
               
chr6:39301230-39300887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
55, 86
               

               
Conread position:
               
4-344
               

               
Cow position:
               
chr6:7253847-7253486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
43, 233
               

               
Conread position:
               
4-344
               

               
Cow position:
               
chr6:61162300-61162645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
42, 100
               

               
Conread position:
               
4-345
               

               
Cow position:
               
chr6:23003817-23003474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
59, 103
               

               
Conread position:
               
4-348
               

               
Cow position:
               
chr6:14064067-14063721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 83
               

               
Conread position:
               
4-349
               

               
Cow position:
               
chr6:6471179-6470828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
61, 95
               

               
Conread position:
               
4-356
               

               
Cow position:
               
chr6:366807-367163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
68, 221
               

               
Conread position:
               
4-361
               

               
Cow position:
               
chr6:10649433-10649071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 100
               

               
Conread position:
               
4-380
               

               
Cow position:
               
chr6:46666698-46667084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 106
               

               
Conread position:
               
4-382
               

               
Cow position:
               
chr6:12623062-12623444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 83
               

               
Conread position:
               
4-385
               

               
Cow position:
               
chr6:49626946-49627338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
90, 95
               

               
Conread position:
               
4-395
               

               
Cow position:
               
chr6:12662589-12662188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
82, 221
               

               
Conread position:
               
4-398
               

               
Cow position:
               
chr6:181801-181412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 141
               

               
Conread position:
               
4-399
               

               
Cow position:
               
chr6:21712447-21712852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
82, 245
               

               
Conread position:
               
4-399
               

               
Cow position:
               
chr6:38061353-38061757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 208
               

               
Conread position:
               
4-399
               

               
Cow position:
               
chr6:47674714-47675118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 218
               

               
Conread position:
               
4-399
               

               
Cow position:
               
chr6:53271395-53271800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 221
               

               
Conread position:
               
4-401
               

               
Cow position:
               
chr6:65711418-65711817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 83
               

               
Conread position:
               
4-401
               

               
Cow position:
               
chr6:66363654-66363250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 219
               

               
Conread position:
               
4-405
               

               
Cow position:
               
chr6:50800826-50800412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
57, 89
               

               
Conread position:
               
4-412
               

               
Cow position:
               
chr6:46570717-46571121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 103
               

               
Conread position:
               
4-414
               

               
Cow position:
               
chr6:24327550-24327135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 90
               

               
Conread position:
               
4-414
               

               
Cow position:
               
chr6:61575183-61575615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 234
               

               
Conread position:
               
4-415
               

               
Cow position:
               
chr6:19401460-19401862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
68, 6
               

               
Conread position:
               
4-416
               

               
Cow position:
               
chr6:12387734-12387317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 99
               

               
Conread position:
               
4-416
               

               
Cow position:
               
chr6:32916328-32915915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 82
               

               
Conread position:
               
4-417
               

               
Cow position:
               
chr6:15046503-15046070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
58, 122
               

               
Conread position:
               
4-418
               

               
Cow position:
               
chr6:29484703-29485096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
70, 55
               

               
Conread position:
               
4-419
               

               
Cow position:
               
chr6:55842581-55842144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 96
               

               
Conread position:
               
4-430
               

               
Cow position:
               
chr6:32867615-32867189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 221
               

               
Conread position:
               
4-437
               

               
Cow position:
               
chr6:48807406-48806967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 88
               

               
Conread position:
               
4-438
               

               
Cow position:
               
chr6:6721713-6722132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
58, 92
               

               
Conread position:
               
4-446
               

               
Cow position:
               
chr6:1174910-1174438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 83
               

               
Conread position:
               
4-447
               

               
Cow position:
               
chr6:27526264-27525809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 123
               

               
Conread position:
               
4-447
               

               
Cow position:
               
chr6:46205609-46206050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 83
               

               
Conread position:
               
4-454
               

               
Cow position:
               
chr6:10612448-10612897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 89
               

               
Conread position:
               
4-467
               

               
Cow position:
               
chr6:12629609-12630077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 40
               

               
Conread position:
               
4-467
               

               
Cow position:
               
chr6:14839434-14838969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 61
               

               
Conread position:
               
4-467
               

               
Cow position:
               
chr6:23987148-23986689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 223
               

               
Conread position:
               
4-471
               

               
Cow position:
               
chr6:9322733-9323209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 15
               

               
Conread position:
               
4-472
               

               
Cow position:
               
chr6:58073628-58074111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 90
               

               
Conread position:
               
4-473
               

               
Cow position:
               
chr6:1887056-1886604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 83
               

               
Conread position:
               
4-474
               

               
Cow position:
               
chr6:24961758-24962206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 127
               

               
Conread position:
               
4-477
               

               
Cow position:
               
chr6:38770896-38771351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 82
               

               
Conread position:
               
4-478
               

               
Cow position:
               
chr6:24030966-24031446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 221
               

               
Conread position:
               
4-478
               

               
Cow position:
               
chr6:25375999-25376480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 408
               

               
Conread position:
               
4-478
               

               
Cow position:
               
chr6:38233584-38234026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 11
               

               
Conread position:
               
4-478
               

               
Cow position:
               
chr6:52478851-52478344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 83
               

               
Conread position:
               
4-479
               

               
Cow position:
               
chr6:643002-642502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 84
               

               
Conread position:
               
4-479
               

               
Cow position:
               
chr6:16625532-16626011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 225
               

               
Conread position:
               
4-480
               

               
Cow position:
               
chr6:6596178-6596645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
57, 85
               

               
Conread position:
               
4-482
               

               
Cow position:
               
chr6:76701-76218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
82, 245
               

               
Conread position:
               
4-482
               

               
Cow position:
               
chr6:757963-758449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 246
               

               
Conread position:
               
4-482
               

               
Cow position:
               
chr6:1797366-1797850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
82, 221
               

               
Conread position:
               
4-482
               

               
Cow position:
               
chr6:2196425-2196913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
82, 225
               

               
Conread position:
               
4-482
               

               
Cow position:
               
chr6:3095365-3094881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 221
               

               
Conread position:
               
4-482
               

               
Cow position:
               
chr6:7137601-7137117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
43, 69
               

               
Conread position:
               
4-482
               

               
Cow position:
               
chr6:35725678-35726165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
62, 37
               

               
Conread position:
               
4-482
               

               
Cow position:
               
chr6:45617854-45617362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 78
               

               
Conread position:
               
4-482
               

               
Cow position:
               
chr6:53740032-53740517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
68, 218
               

               
Conread position:
               
4-483
               

               
Cow position:
               
chr6:1914221-1914691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
31, 26
               

               
Conread position:
               
4-483
               

               
Cow position:
               
chr6:5095959-5095470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 83
               

               
Conread position:
               
4-483
               

               
Cow position:
               
chr6:6068095-6067630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 15
               

               
Conread position:
               
4-483
               

               
Cow position:
               
chr6:18049434-18048952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 59
               

               
Conread position:
               
4-483
               

               
Cow position:
               
chr6:28977458-28976968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 85
               

               
Conread position:
               
4-483
               

               
Cow position:
               
chr6:32121487-32121979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 233
               

               
Conread position:
               
4-483
               

               
Cow position:
               
chr6:32125658-32126128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 222
               

               
Conread position:
               
4-483
               

               
Cow position:
               
chr6:36652015-36652494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 94
               

               
Conread position:
               
4-483
               

               
Cow position:
               
chr6:40031785-40032262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 19
               

               
Conread position:
               
4-483
               

               
Cow position:
               
chr6:42565278-42565760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 16
               

               
Conread position:
               
4-483
               

               
Cow position:
               
chr6:46292735-46292276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 59
               

               
Conread position:
               
4-483
               

               
Cow position:
               
chr6:52556882-52556408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 96
               

               
Conread position:
               
4-483
               

               
Cow position:
               
chr6:62925409-62924924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 124
               

               
Conread position:
               
4-483
               

               
Cow position:
               
chr6:63197583-63197091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 90
               

               
Conread position:
               
4-483
               

               
Cow position:
               
chr6:65870617-65871109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 95
               

               
Conread position:
               
4-484
               

               
Cow position:
               
chr6:28172811-28173300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
71, 218
               

               
Conread position:
               
4-485
               

               
Cow position:
               
chr6:36470976-36470488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 86
               

               
Conread position:
               
4-486
               

               
Cow position:
               
chr6:17090177-17090674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 160
               

               
Conread position:
               
4-489
               

               
Cow position:
               
chr6:33460683-33461168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 53
               

               
Conread position:
               
4-491
               

               
Cow position:
               
chr6:16675408-16675886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 92
               

               
Conread position:
               
4-494
               

               
Cow position:
               
chr6:10695451-10695949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 83
               

               
Conread position:
               
5-179
               

               
Cow position:
               
chr6:50114438-50114613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
60, 82
               

               
Conread position:
               
5-219
               

               
Cow position:
               
chr6:28161148-28161366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
69, 54
               

               
Conread position:
               
5-266
               

               
Cow position:
               
chr6:33451563-33451822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
46, 82
               

               
Conread position:
               
5-266
               

               
Cow position:
               
chr6:62015238-62015501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 82
               

               
Conread position:
               
5-309
               

               
Cow position:
               
chr6:56501904-56502208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 130
               

               
Conread position:
               
5-323
               

               
Cow position:
               
chr6:35274881-35274550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
52, 88
               

               
Conread position:
               
5-416
               

               
Cow position:
               
chr6:54647933-54647513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 83
               

               
Conread position:
               
5-467
               

               
Cow position:
               
chr6:5958423-5957972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 83
               

               
Conread position:
               
5-477
               

               
Cow position:
               
chr6:51674504-51674975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 23
               

               
Conread position:
               
5-481
               

               
Cow position:
               
chr6:32269263-32268814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
59, 88
               

               
Conread position:
               
5-483
               

               
Cow position:
               
chr6:444920-445395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 32
               

               
Conread position:
               
5-483
               

               
Cow position:
               
chr6:18961928-18961443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 82
               

               
Conread position:
               
5-483
               

               
Cow position:
               
chr6:25822406-25821933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
60, 82
               

               
Conread position:
               
5-484
               

               
Cow position:
               
chr6:14696779-14696298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 55
               

               
Conread position:
               
5-484
               

               
Cow position:
               
chr6:28147848-28148329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 109
               

               
Conread position:
               
5-484
               

               
Cow position:
               
chr6:48169537-48170011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 82
               

               
Conread position:
               
5-505
               

               
Cow position:
               
chr6:24583650-24583129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
50, 89
               

               
Conread position:
               
6-192
               

               
Cow position:
               
chr6:66433512-66433699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
167, 66
               

               
Conread position:
               
6-219
               

               
Cow position:
               
chr6:65921016-65920799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
6-447
               

               
Cow position:
               
chr6:34842966-34842513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 216
               

               
Conread position:
               
6-483
               

               
Cow position:
               
chr6:35103728-35103256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 10
               

               
Conread position:
               
6-483
               

               
Cow position:
               
chr6:39093356-39093823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
99, 203
               

               
Conread position:
               
6-483
               

               
Cow position:
               
chr6:65871505-65871962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
54, 87
               

               
Conread position:
               
7-200
               

               
Cow position:
               
chr6:15182482-15182675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
65, 90
               

               
Conread position:
               
7-483
               

               
Cow position:
               
chr6:49399023-49398548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 80
               

               
Conread position:
               
9-190
               

               
Cow position:
               
chr6:30473876-30474067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
52, 83
               

               
Conread position:
               
10-192
               

               
Cow position:
               
chr6:31978997-31978809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
52, 86
               

               
Conread position:
               
10-200
               

               
Cow position:
               
chr6:47574526-47574727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
10-373
               

               
Cow position:
               
chr6:49411082-49410727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
55, 77
               

               
Conread position:
               
11-285
               

               
Cow position:
               
chr6:50802585-50802298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
51, 223
               

               
Conread position:
               
11-472
               

               
Cow position:
               
chr6:16410796-16411252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 53
               

               
Conread position:
               
11-484
               

               
Cow position:
               
chr6:37634389-37634860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 77
               

               
Conread position:
               
12-466
               

               
Cow position:
               
chr6:56849595-56850071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 87
               

               
Conread position:
               
12-482
               

               
Cow position:
               
chr6:28065736-28066217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
74, 404
               

               
Conread position:
               
12-488
               

               
Cow position:
               
chr6:23426792-23427274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
74, 213
               

               
Conread position:
               
14-205
               

               
Cow position:
               
chr6:7111989-7111796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
51, 73
               

               
Conread position:
               
16-192
               

               
Cow position:
               
chr6:25773874-25773697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
57, 44
               

               
Conread position:
               
16-415
               

               
Cow position:
               
chr6:1891261-1890837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
34, 85
               

               
Conread position:
               
16-481
               

               
Cow position:
               
chr6:11192847-11192394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 43
               

               
Conread position:
               
16-483
               

               
Cow position:
               
chr6:6343026-6343498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 11
               

               
Conread position:
               
18-483
               

               
Cow position:
               
chr6:34549010-34549474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
45, 71
               

               
Conread position:
               
20-380
               

               
Cow position:
               
chr6:45691002-45690618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 67
               

               
Conread position:
               
23-482
               

               
Cow position:
               
chr6:9008989-9008541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
296, 19
               

               
Conread position:
               
24-417
               

               
Cow position:
               
chr6:33302022-33302422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 64
               

               
Conread position:
               
24-483
               

               
Cow position:
               
chr6:17556986-17557453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 64
               

               
Conread position:
               
25-483
               

               
Cow position:
               
chr6:6944067-6943607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
27, 69
               

               
Conread position:
               
25-483
               

               
Cow position:
               
chr6:24004153-24004608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 69
               

               
Conread position:
               
26-484
               

               
Cow position:
               
chr6:6642972-6642535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 61
               

               
Conread position:
               
27-281
               

               
Cow position:
               
chr6:27815867-27815625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
205, 135
               

               
Conread position:
               
27-483
               

               
Cow position:
               
chr6:16706624-16707087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 66
               

               
Conread position:
               
30-477
               

               
Cow position:
               
chr6:25407787-25407326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 54
               

               
Conread position:
               
33-474
               

               
Cow position:
               
chr6:8804923-8804466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 55
               

               
Conread position:
               
34-483
               

               
Cow position:
               
chr6:14958721-14958269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 54
               

               
Conread position:
               
40-417
               

               
Cow position:
               
chr6:12927750-12928130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 48
               

               
Conread position:
               
43-477
               

               
Cow position:
               
chr6:52248492-52248066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 35
               

               
Conread position:
               
52-483
               

               
Cow position:
               
chr6:10106361-10105907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 35
               

               
Conread position:
               
52-483
               

               
Cow position:
               
chr6:31535917-31535497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 31
               

               
Conread position:
               
53-484
               

               
Cow position:
               
chr6:21004296-21004747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 154
               

               
Conread position:
               
63-478
               

               
Cow position:
               
chr6:8318514-8318093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 24
               

               
Conread position:
               
63-480
               

               
Cow position:
               
chr6:19427101-19427524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 24
               

               
Conread position:
               
63-481
               

               
Cow position:
               
chr6:28148497-28148905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 29
               

               
Conread position:
               
63-482
               

               
Cow position:
               
chr6:35990575-35990165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 24
               

               
Conread position:
               
64-483
               

               
Cow position:
               
chr6:47304980-47305413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 23
               

               
Conread position:
               
64-483
               

               
Cow position:
               
chr6:63047229-63047664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 35
               

               
Conread position:
               
65-416
               

               
Cow position:
               
chr6:66431497-66431830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
24, 161
               

               
Conread position:
               
71-227
               

               
Cow position:
               
chr6:35260507-35260665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
102, 150
               

               
Conread position:
               
76-480
               

               
Cow position:
               
chr6:456846-457248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 10
               

               
Conread position:
               
77-477
               

               
Cow position:
               
chr6:66532136-66531755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 7
               

               
Conread position:
               
77-479
               

               
Cow position:
               
chr6:15242520-15242904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 9
               

               
Conread position:
               
77-483
               

               
Cow position:
               
chr6:44078183-44078589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 13
               

               
Conread position:
               
77-484
               

               
Cow position:
               
chr6:28482680-28483088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 148
               

               
Conread position:
               
79-483
               

               
Cow position:
               
chr6:10176630-10176230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 7
               

               
Conread position:
               
83-479
               

               
Cow position:
               
chr6:5445319-5445691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
207, 80
               

               
Conread position:
               
90-483
               

               
Cow position:
               
chr6:561298-561699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 130
               

               
Conread position:
               
97-440
               

               
Cow position:
               
chr6:50446074-50445729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 124
               

               
Conread position:
               
97-483
               

               
Cow position:
               
chr6:19681831-19681453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 88
               

               
Conread position:
               
100-456
               

               
Cow position:
               
chr6:20231137-20230781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 125
               

               
Conread position:
               
100-477
               

               
Cow position:
               
chr6:5672918-5673313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 44
               

               
Conread position:
               
100-482
               

               
Cow position:
               
chr6:28276348-28276735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
84, 151
               

               
Conread position:
               
100-483
               

               
Cow position:
               
chr6:12337673-12338065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 121
               

               
Conread position:
               
102-486
               

               
Cow position:
               
chr6:38218353-38218745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 27
               

               
Conread position:
               
106-483
               

               
Cow position:
               
chr6:47519745-47520125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
73, 108
               

               
Conread position:
               
108-476
               

               
Cow position:
               
chr6:31525748-31526120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 110
               

               
Conread position:
               
113-483
               

               
Cow position:
               
chr6:60057964-60057583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 95
               

               
Conread position:
               
114-483
               

               
Cow position:
               
chr6:15938162-15937783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 123
               

               
Conread position:
               
116-447
               

               
Cow position:
               
chr6:12389803-12390141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
61, 97
               

               
Conread position:
               
118-408
               

               
Cow position:
               
chr6:40264487-40264200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 21
               

               
Conread position:
               
118-481
               

               
Cow position:
               
chr6:24545335-24545684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
207, 76
               

               
Conread position:
               
120-467
               

               
Cow position:
               
chr6:62479457-62479104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 101
               

               
Conread position:
               
123-483
               

               
Cow position:
               
chr6:34196437-34196078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 98
               

               
Conread position:
               
124-483
               

               
Cow position:
               
chr6:54369184-54368832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
198, 94
               

               
Conread position:
               
126-483
               

               
Cow position:
               
chr6:54867226-54867589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 99
               

               
Conread position:
               
126-487
               

               
Cow position:
               
chr6:57164141-57164504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 102
               

               
Conread position:
               
127-417
               

               
Cow position:
               
chr6:7103514-7103222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
161, 13
               

               
Conread position:
               
130-483
               

               
Cow position:
               
chr6:61515481-61515116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 93
               

               
Conread position:
               
131-379
               

               
Cow position:
               
chr6:21534778-21535027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 94
               

               
Conread position:
               
137-477
               

               
Cow position:
               
chr6:42961642-42961290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
38, 88
               

               
Conread position:
               
137-484
               

               
Cow position:
               
chr6:50746702-50747071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
42, 92
               

               
Conread position:
               
139-475
               

               
Cow position:
               
chr6:54365596-54365264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 87
               

               
Conread position:
               
140-483
               

               
Cow position:
               
chr6:8788305-8787965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
54, 13
               

               
Conread position:
               
143-478
               

               
Cow position:
               
chr6:60350566-60350225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 80
               

               
Conread position:
               
143-479
               

               
Cow position:
               
chr6:40774613-40774264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
51, 6
               

               
Conread position:
               
144-483
               

               
Cow position:
               
chr6:35471794-35471437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 81
               

               
Conread position:
               
147-479
               

               
Cow position:
               
chr6:40713763-40713435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 14
               

               
Conread position:
               
151-419
               

               
Cow position:
               
chr6:54293850-54294119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 73
               

               
Conread position:
               
152-482
               

               
Cow position:
               
chr6:65903876-65903553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
31, 70
               

               
Conread position:
               
153-419
               

               
Cow position:
               
chr6:64449133-64449403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 96
               

               
Conread position:
               
155-458
               

               
Cow position:
               
chr6:32335563-32335848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
14, 8
               

               
Conread position:
               
157-479
               

               
Cow position:
               
chr6:3952270-3952586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
20, 64
               

               
Conread position:
               
169-483
               

               
Cow position:
               
chr6:56376587-56376276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
25, 29
               

               
Conread position:
               
169-488
               

               
Cow position:
               
chr6:67950720-67951032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
172-379
               

               
Cow position:
               
chr6:61978418-61978203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
128, 48
               

               
Conread position:
               
176-446
               

               
Cow position:
               
chr6:54885146-54884868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
146, 46
               

               
Conread position:
               
176-481
               

               
Cow position:
               
chr6:38614590-38614889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 47
               

               
Conread position:
               
178-483
               

               
Cow position:
               
chr6:29239712-29240013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
147, 100
               

               
Conread position:
               
178-487
               

               
Cow position:
               
chr6:38641268-38641573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 19
               

               
Conread position:
               
180-460
               

               
Cow position:
               
chr6:45160520-45160249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
139, 44
               

               
Conread position:
               
181-413
               

               
Cow position:
               
chr6:388943-389179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
141, 42
               

               
Conread position:
               
181-432
               

               
Cow position:
               
chr6:2582647-2582892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
141, 30
               

               
Conread position:
               
181-483
               

               
Cow position:
               
chr6:7824535-7824838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
113, 39
               

               
Conread position:
               
181-486
               

               
Cow position:
               
chr6:16103430-16103121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
143, 41
               

               
Conread position:
               
182-467
               

               
Cow position:
               
chr6:25773608-25773329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 40
               

               
Conread position:
               
182-483
               

               
Cow position:
               
chr6:21542093-21542395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 40
               

               
Conread position:
               
183-478
               

               
Cow position:
               
chr6:60239614-60239328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
107, 24
               

               
Conread position:
               
184-483
               

               
Cow position:
               
chr6:46865824-46865520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
32, 245
               

               
Conread position:
               
185-391
               

               
Cow position:
               
chr6:7694577-7694365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
109, 33
               

               
Conread position:
               
187-478
               

               
Cow position:
               
chr6:49685363-49685649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 35
               

               
Conread position:
               
187-480
               

               
Cow position:
               
chr6:47327290-47326999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
120, 227
               

               
Conread position:
               
187-483
               

               
Cow position:
               
chr6:38207717-38207418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 31
               

               
Conread position:
               
187-488
               

               
Cow position:
               
chr6:41733405-41733703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
135, 36
               

               
Conread position:
               
188-416
               

               
Cow position:
               
chr6:30786369-30786147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
137, 30
               

               
Conread position:
               
188-472
               

               
Cow position:
               
chr6:23248184-23247901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
100, 34
               

               
Conread position:
               
188-477
               

               
Cow position:
               
chr6:7190340-7190053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 34
               

               
Conread position:
               
188-483
               

               
Cow position:
               
chr6:51893734-51893428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
30, 237
               

               
Conread position:
               
190-417
               

               
Cow position:
               
chr6:39994680-39994453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
100, 32
               

               
Conread position:
               
190-451
               

               
Cow position:
               
chr6:30826253-30825991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
100, 30
               

               
Conread position:
               
190-459
               

               
Cow position:
               
chr6:5462267-5462010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
95, 28
               

               
Conread position:
               
190-462
               

               
Cow position:
               
chr6:1907320-1907595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
27, 34
               

               
Conread position:
               
190-479
               

               
Cow position:
               
chr6:35435784-35436062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
224, 138
               

               
Conread position:
               
190-483
               

               
Cow position:
               
chr6:14949700-14949409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
110, 35
               

               
Conread position:
               
190-483
               

               
Cow position:
               
chr6:15301036-15300757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
78, 33
               

               
Conread position:
               
190-483
               

               
Cow position:
               
chr6:35415740-35415443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
81, 28
               

               
Conread position:
               
190-483
               

               
Cow position:
               
chr6:36202609-36202893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
131, 50
               

               
Conread position:
               
190-483
               

               
Cow position:
               
chr6:45065225-45064945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
61, 32
               

               
Conread position:
               
190-483
               

               
Cow position:
               
chr6:54490959-54490661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
112, 28
               

               
Conread position:
               
190-502
               

               
Cow position:
               
chr6:66874143-66874447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 32
               

               
Conread position:
               
191-479
               

               
Cow position:
               
chr6:242596-242870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
127, 27
               

               
Conread position:
               
192-458
               

               
Cow position:
               
chr6:48344111-48344380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 26
               

               
Conread position:
               
192-474
               

               
Cow position:
               
chr6:60442202-60442477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
121, 26
               

               
Conread position:
               
192-481
               

               
Cow position:
               
chr6:37199766-37199457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
192-483
               

               
Cow position:
               
chr6:38440965-38441244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
193-479
               

               
Cow position:
               
chr6:40760915-40761193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
49, 38
               

               
Conread position:
               
196-454
               

               
Cow position:
               
chr6:24515406-24515155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
126, 26
               

               
Conread position:
               
197-460
               

               
Cow position:
               
chr6:62324778-62325041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
124, 230
               

               
Conread position:
               
197-482
               

               
Cow position:
               
chr6:57405336-57405054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 25
               

               
Conread position:
               
197-483
               

               
Cow position:
               
chr6:31564545-31564265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
32, 12
               

               
Conread position:
               
198-405
               

               
Cow position:
               
chr6:53139140-53138924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
103, 24
               

               
Conread position:
               
198-482
               

               
Cow position:
               
chr6:23532452-23532728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
77, 24
               

               
Conread position:
               
200-478
               

               
Cow position:
               
chr6:47988981-47989239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
93, 18
               

               
Conread position:
               
201-434
               

               
Cow position:
               
chr6:28080105-28079873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
101, 21
               

               
Conread position:
               
201-480
               

               
Cow position:
               
chr6:54864874-54864587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
119, 17
               

               
Conread position:
               
202-470
               

               
Cow position:
               
chr6:61137158-61137434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 144
               

               
Conread position:
               
203-479
               

               
Cow position:
               
chr6:6098488-6098198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
162, 19
               

               
Conread position:
               
208-446
               

               
Cow position:
               
chr6:58732514-58732268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
73, 10
               

               
Conread position:
               
209-457
               

               
Cow position:
               
chr6:52025855-52025604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
112, 205
               

               
Conread position:
               
209-483
               

               
Cow position:
               
chr6:528476-528212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
85, 14
               

               
Conread position:
               
209-483
               

               
Cow position:
               
chr6:14850915-14850642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
112, 99
               

               
Conread position:
               
209-484
               

               
Cow position:
               
chr6:59069828-59069551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 13
               

               
Conread position:
               
210-415
               

               
Cow position:
               
chr6:33276840-33277050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
84, 12
               

               
Conread position:
               
210-482
               

               
Cow position:
               
chr6:63299222-63298960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
195, 12
               

               
Conread position:
               
210-483
               

               
Cow position:
               
chr6:10400094-10399834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
124, 12
               

               
Conread position:
               
211-458
               

               
Cow position:
               
chr6:415897-416153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
83, 10
               

               
Conread position:
               
211-483
               

               
Cow position:
               
chr6:12092182-12091921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
212-483
               

               
Cow position:
               
chr6:16191469-16191750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
82, 17
               

               
Conread position:
               
213-467
               

               
Cow position:
               
chr6:53731325-53731580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
109, 9
               

               
Conread position:
               
213-483
               

               
Cow position:
               
chr6:5114243-5113977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
75, 26
               

               
Conread position:
               
221-483
               

               
Cow position:
               
chr6:47799109-47799365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
102, 45
               

               
Conread position:
               
222-474
               

               
Cow position:
               
chr6:21062071-21061818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
115, 59
               

               
Conread position:
               
222-477
               

               
Cow position:
               
chr6:20157136-20157399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
37, 208
               

               
Conread position:
               
222-481
               

               
Cow position:
               
chr6:63720011-63720270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
99, 56
               

               
Conread position:
               
222-483
               

               
Cow position:
               
chr6:16423511-16423774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
68, 93
               

               
Conread position:
               
222-483
               

               
Cow position:
               
chr6:52412666-52412931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
72, 208
               

               
Conread position:
               
222-485
               

               
Cow position:
               
chr6:9452961-9452696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
78, 159
               

               
Conread position:
               
222-494
               

               
Cow position:
               
chr6:28318221-28318485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
110, 76
               

               
Conread position:
               
223-477
               

               
Cow position:
               
chr6:53519810-53519558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 92
               

               
Conread position:
               
224-479
               

               
Cow position:
               
chr6:30973854-30974114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
13, 132
               

               
Conread position:
               
225-458
               

               
Cow position:
               
chr6:8187704-8187473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
69, 149
               

               
Conread position:
               
226-483
               

               
Cow position:
               
chr6:25008530-25008790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
183, 97
               

               
Conread position:
               
226-483
               

               
Cow position:
               
chr6:37149009-37149261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 80
               

               
Conread position:
               
229-419
               

               
Cow position:
               
chr6:60819333-60819527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
231-445
               

               
Cow position:
               
chr6:18968952-18968746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
94, 28
               

               
Conread position:
               
235-479
               

               
Cow position:
               
chr6:35993402-35993652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
53, 159
               

               
Conread position:
               
236-460
               

               
Cow position:
               
chr6:49604509-49604725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
51, 19
               

               
Conread position:
               
236-483
               

               
Cow position:
               
chr6:11246591-11246836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 5
               

               
Conread position:
               
236-483
               

               
Cow position:
               
chr6:19012895-19013143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
70, 80
               

               
Conread position:
               
236-483
               

               
Cow position:
               
chr6:59104434-59104671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
237-478
               

               
Cow position:
               
chr6:65264708-65264475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
95, 50
               

               
Conread position:
               
237-483
               

               
Cow position:
               
chr6:12668934-12669171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
77, 42
               

               
Conread position:
               
239-483
               

               
Cow position:
               
chr6:15447379-15447126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
240-446
               

               
Cow position:
               
chr6:54287910-54288107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
82, 44
               

               
Conread position:
               
240-478
               

               
Cow position:
               
chr6:17334227-17333986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
57, 177
               

               
Conread position:
               
240-483
               

               
Cow position:
               
chr6:47355654-47355895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
83, 152
               

               
Conread position:
               
240-483
               

               
Cow position:
               
chr6:52901071-52901310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
170, 28
               

               
Conread position:
               
240-504
               

               
Cow position:
               
chr6:9838992-9839265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
80, 185
               

               
Conread position:
               
242-483
               

               
Cow position:
               
chr6:19446092-19446325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
79, 46
               

               
Conread position:
               
245-483
               

               
Cow position:
               
chr6:12543098-12542858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 181
               

               
Conread position:
               
246-483
               

               
Cow position:
               
chr6:26450153-26450386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
48, 108
               

               
Conread position:
               
246-483
               

               
Cow position:
               
chr6:59108778-59109017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
76, 35
               

               
Conread position:
               
247-417
               

               
Cow position:
               
chr6:32987161-32986989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
41, 72
               

               
Conread position:
               
247-483
               

               
Cow position:
               
chr6:14914402-14914164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
72, 35
               

               
Conread position:
               
247-484
               

               
Cow position:
               
chr6:44984163-44984402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
47, 174
               

               
Conread position:
               
250-472
               

               
Cow position:
               
chr6:40834633-40834407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
44, 177
               

               
Conread position:
               
250-477
               

               
Cow position:
               
chr6:31847380-31847159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
80, 145
               

               
Conread position:
               
250-481
               

               
Cow position:
               
chr6:49694215-49694449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
44, 65
               

               
Conread position:
               
250-481
               

               
Cow position:
               
chr6:57546376-57546154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
29, 83
               

               
Conread position:
               
250-483
               

               
Cow position:
               
chr6:120079-120317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
44, 171
               

               
Conread position:
               
250-483
               

               
Cow position:
               
chr6:55763694-55763925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
59, 165
               

               
Conread position:
               
251-493
               

               
Cow position:
               
chr6:30688766-30688532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
51, 36
               

               
Conread position:
               
254-477
               

               
Cow position:
               
chr6:27815625-27815406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
160, 48
               

               
Conread position:
               
254-483
               

               
Cow position:
               
chr6:60739859-60740086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
67, 170
               

               
Conread position:
               
255-483
               

               
Cow position:
               
chr6:67323161-67323381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
67, 117
               

               
Conread position:
               
256-477
               

               
Cow position:
               
chr6:57298866-57299081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
69, 31
               

               
Conread position:
               
258-483
               

               
Cow position:
               
chr6:4692136-4691903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
259-483
               

               
Cow position:
               
chr6:58370593-58370830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
52, 19
               

               
Conread position:
               
261-483
               

               
Cow position:
               
chr6:582419-582200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
60, 16
               

               
Conread position:
               
261-483
               

               
Cow position:
               
chr6:48803789-48803561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
27, 11
               

               
Conread position:
               
261-485
               

               
Cow position:
               
chr6:9219124-9219346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
61, 147
               

               
Conread position:
               
265-417
               

               
Cow position:
               
chr6:48988292-48988449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
265-483
               

               
Cow position:
               
chr6:60667275-60667485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
11, 41
               

               
Conread position:
               
270-479
               

               
Cow position:
               
chr6:38609828-38610036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
54, 139
               

               
Conread position:
               
270-483
               

               
Cow position:
               
chr6:4559443-4559233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
52, 30
               

               
Conread position:
               
272-477
               

               
Cow position:
               
chr6:43135082-43134873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
50, 97
               

               
Conread position:
               
274-478
               

               
Cow position:
               
chr6:44756907-44757106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
46, 7
               

               
Conread position:
               
274-483
               

               
Cow position:
               
chr6:17313599-17313807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
51, 8
               

               
Conread position:
               
274-483
               

               
Cow position:
               
chr6:45388195-45388398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
48, 7
               

               
Conread position:
               
274-483
               

               
Cow position:
               
chr6:60118010-60118222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
20, 133
               

               
Conread position:
               
279-482
               

               
Cow position:
               
chr6:53841630-53841435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
46, 77
               

               
Conread position:
               
279-483
               

               
Cow position:
               
chr6:12829353-12829153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
40, 25
               

               
Conread position:
               
280-483
               

               
Cow position:
               
chr6:20206146-20206347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
60, 129
               

               
Conread position:
               
283-537
               

               
Cow position:
               
chr6:5413692-5413948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
30, 141
               

               
Conread position:
               
284-483
               

               
Cow position:
               
chr6:23402115-23401920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
41, 138
               

               
Conread position:
               
286-483
               

               
Cow position:
               
chr6:7119734-7119547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
36, 71
               

               
Conread position:
               
287-446
               

               
Cow position:
               
chr6:358011-357851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
37, 16
               

               
Conread position:
               
288-421
               

               
Cow position:
               
chr6:10225761-10225628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
44, 109
               

               
Conread position:
               
288-470
               

               
Cow position:
               
chr6:19351276-19351099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
34, 124
               

               
Conread position:
               
288-482
               

               
Cow position:
               
chr6:21590571-21590778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
94, 143
               

               
Conread position:
               
288-483
               

               
Cow position:
               
chr6:16266597-16266796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
38, 123
               

               
Conread position:
               
293-483
               

               
Cow position:
               
chr6:12845262-12845452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
28, 134
               

               
Conread position:
               
295-481
               

               
Cow position:
               
chr6:20196408-20196229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
27, 45
               

               
Conread position:
               
298-434
               

               
Cow position:
               
chr6:56849029-56848890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
24, 131
               

               
Conread position:
               
305-483
               

               
Cow position:
               
chr6:59718691-59718869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
20, 139
               

               
Conread position:
               
315-483
               

               
Cow position:
               
chr6:10487494-10487660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
318-465
               

               
Cow position:
               
chr6:60673479-60673622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
318-479
               

               
Cow position:
               
chr6:19292708-19292869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
21, 66
               

               
Conread position:
               
318-483
               

               
Cow position:
               
chr6:1429549-1429712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
54, 17
               

               
Conread position:
               
318-483
               

               
Cow position:
               
chr6:17549071-17548902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
318-483
               

               
Cow position:
               
chr6:17794846-17794692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
21, 37
               

               
Conread position:
               
320-486
               

               
Cow position:
               
chr6:6673014-6673177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
9, 100
               

               
Conread position:
               
322-483
               

               
Cow position:
               
chr6:37462936-37463094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
93, 52
               

               
Conread position:
               
322-483
               

               
Cow position:
               
chr6:51968981-51969148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
78, 108
               

               
Conread position:
               
326-479
               

               
Cow position:
               
chr6:54365085-54364930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
327-483
               

               
Cow position:
               
chr6:2623701-2623848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
327-483
               

               
Cow position:
               
chr6:37395489-37395329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
6, 15
               

               
Conread position:
               
331-483
               

               
Cow position:
               
chr6:22985935-22985783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
112, 107
               

               
Conread position:
               
331-483
               

               
Cow position:
               
chr6:46998215-46998067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
39, 22
               

               
Conread position:
               
332-483
               

               
Cow position:
               
chr6:33929626-33929475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
82, 95
               

               
Conread position:
               
338-483
               

               
Cow position:
               
chr6:16288122-16287986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
339-483
               

               
Cow position:
               
chr6:61142633-61142490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
121, 81
               

               
Conread position:
               
341-483
               

               
Cow position:
               
chr6:26765081-26764942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
342-481
               

               
Cow position:
               
chr6:28179012-28178877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
89, 48
               

               
Conread position:
               
342-483
               

               
Cow position:
               
chr6:67281831-67281966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
359-479
               

               
Cow position:
               
chr6:68652402-68652283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
54, 63
               

               
Conread position:
               
369-477
               

               
Cow position:
               
chr6:55535788-55535683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
49, 0
               
Show alignments to all cow chromosomes.