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Cow genome map

           
Conread name:
           
Pig4-TMW8016J06
        

               
Conread position:
               
1-232
               

               
Cow position:
               
chr1:42053633-42053409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
85, 149
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr1:81859535-81859298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 85
               

               
Conread position:
               
1-253
               

               
Cow position:
               
chr1:43893620-43893861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 85
               

               
Conread position:
               
1-255
               

               
Cow position:
               
chr1:11914180-11913939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
1-256
               

               
Cow position:
               
chr1:36997889-36998134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
1-256
               

               
Cow position:
               
chr1:47008724-47008970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
79, 40
               

               
Conread position:
               
1-256
               

               
Cow position:
               
chr1:101915861-101916111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
147, 85
               

               
Conread position:
               
1-258
               

               
Cow position:
               
chr1:68276099-68276354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 211
               

               
Conread position:
               
1-261
               

               
Cow position:
               
chr1:8532522-8532270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
60, 109
               

               
Conread position:
               
1-261
               

               
Cow position:
               
chr1:57576070-57575815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
174, 48
               

               
Conread position:
               
1-261
               

               
Cow position:
               
chr1:83082697-83082949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
81, 65
               

               
Conread position:
               
1-261
               

               
Cow position:
               
chr1:88652323-88652574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 0
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chr1:21460562-21460815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chr1:69445066-69445310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr1:1801839-1802085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr1:4589789-4589527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
86, 138
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr1:10778265-10778513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
39, 148
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr1:12596212-12595957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
48, 118
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr1:26702505-26702260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr1:28176706-28176956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
152, 38
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr1:31348740-31348493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr1:35162096-35162356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 157
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr1:39418426-39418174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 0
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr1:39555072-39555323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr1:42256818-42256556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 203
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr1:45289179-45288925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 58
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr1:53520604-53520859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 54
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr1:58419616-58419884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
53, 166
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr1:68282486-68282748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 148
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr1:82861465-82861728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 213
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr1:89742320-89742049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 179
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr1:94226856-94226605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 144
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr1:100450500-100450234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
44, 59
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr1:102350077-102349807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
47, 186
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr1:20125303-20125561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 51
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr1:81180293-81180026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
42, 216
               

               
Conread position:
               
1-266
               

               
Cow position:
               
chr1:53613505-53613246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
49, 99
               

               
Conread position:
               
1-266
               

               
Cow position:
               
chr1:68782967-68782693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
44, 101
               

               
Conread position:
               
1-266
               

               
Cow position:
               
chr1:72035237-72034976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 112
               

               
Conread position:
               
1-272
               

               
Cow position:
               
chr1:55135535-55135788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
85, 50
               

               
Conread position:
               
1-274
               

               
Cow position:
               
chr1:37309818-37309558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
27, 85
               

               
Conread position:
               
1-274
               

               
Cow position:
               
chr1:78091724-78091995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
80, 151
               

               
Conread position:
               
1-274
               

               
Cow position:
               
chr1:82504659-82504936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 214
               

               
Conread position:
               
1-274
               

               
Cow position:
               
chr1:90868746-90868481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
50, 136
               

               
Conread position:
               
1-274
               

               
Cow position:
               
chr1:91817079-91816812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 45
               

               
Conread position:
               
1-274
               

               
Cow position:
               
chr1:99136738-99136471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 90
               

               
Conread position:
               
1-277
               

               
Cow position:
               
chr1:69264514-69264773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
263, 145
               

               
Conread position:
               
1-277
               

               
Cow position:
               
chr1:79590792-79591070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 212
               

               
Conread position:
               
1-278
               

               
Cow position:
               
chr1:3137618-3137893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
38, 110
               

               
Conread position:
               
1-278
               

               
Cow position:
               
chr1:3323546-3323829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
60, 42
               

               
Conread position:
               
1-278
               

               
Cow position:
               
chr1:11728885-11729145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
144, 72
               

               
Conread position:
               
1-278
               

               
Cow position:
               
chr1:15547161-15547435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
242, 148
               

               
Conread position:
               
1-278
               

               
Cow position:
               
chr1:18937141-18936871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 63
               

               
Conread position:
               
1-278
               

               
Cow position:
               
chr1:42359949-42360238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
56, 41
               

               
Conread position:
               
1-278
               

               
Cow position:
               
chr1:54199688-54199418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
263, 85
               

               
Conread position:
               
1-278
               

               
Cow position:
               
chr1:54258264-54258526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
85, 39
               

               
Conread position:
               
1-278
               

               
Cow position:
               
chr1:55357588-55357321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
263, 54
               

               
Conread position:
               
1-278
               

               
Cow position:
               
chr1:57698764-57698484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 231
               

               
Conread position:
               
1-278
               

               
Cow position:
               
chr1:61392101-61391825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 121
               

               
Conread position:
               
1-278
               

               
Cow position:
               
chr1:63435111-63434842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 85
               

               
Conread position:
               
1-278
               

               
Cow position:
               
chr1:68619227-68618969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
152, 43
               

               
Conread position:
               
1-278
               

               
Cow position:
               
chr1:69539389-69539661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 116
               

               
Conread position:
               
1-278
               

               
Cow position:
               
chr1:69695314-69695028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 38
               

               
Conread position:
               
1-278
               

               
Cow position:
               
chr1:69941273-69941003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 40
               

               
Conread position:
               
1-278
               

               
Cow position:
               
chr1:73561957-73561686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 71
               

               
Conread position:
               
1-278
               

               
Cow position:
               
chr1:81228639-81228378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
1-278
               

               
Cow position:
               
chr1:85596638-85596905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 77
               

               
Conread position:
               
1-278
               

               
Cow position:
               
chr1:86113721-86113441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 135
               

               
Conread position:
               
1-278
               

               
Cow position:
               
chr1:95176627-95176899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 209
               

               
Conread position:
               
1-278
               

               
Cow position:
               
chr1:95215484-95215217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 11
               

               
Conread position:
               
1-278
               

               
Cow position:
               
chr1:100421537-100421796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
30, 43
               

               
Conread position:
               
1-280
               

               
Cow position:
               
chr1:3035298-3035027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
83, 20
               

               
Conread position:
               
1-281
               

               
Cow position:
               
chr1:11772389-11772108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 212
               

               
Conread position:
               
1-281
               

               
Cow position:
               
chr1:20002560-20002272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
50, 21
               

               
Conread position:
               
1-281
               

               
Cow position:
               
chr1:41181534-41181812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
85, 7
               

               
Conread position:
               
1-281
               

               
Cow position:
               
chr1:82884693-82884423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
259, 85
               

               
Conread position:
               
1-281
               

               
Cow position:
               
chr1:83982684-83982403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 51
               

               
Conread position:
               
1-281
               

               
Cow position:
               
chr1:84282753-84283041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
86, 190
               

               
Conread position:
               
1-281
               

               
Cow position:
               
chr1:89834927-89835216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 84
               

               
Conread position:
               
1-281
               

               
Cow position:
               
chr1:92370667-92370392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 78
               

               
Conread position:
               
1-281
               

               
Cow position:
               
chr1:94211926-94212197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 0
               

               
Conread position:
               
1-281
               

               
Cow position:
               
chr1:102647577-102647305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 148
               

               
Conread position:
               
1-283
               

               
Cow position:
               
chr1:52753474-52753200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 148
               

               
Conread position:
               
2-278
               

               
Cow position:
               
chr1:22448891-22448623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
262, 84
               

               
Conread position:
               
2-278
               

               
Cow position:
               
chr1:53374127-53374395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 148
               

               
Conread position:
               
2-278
               

               
Cow position:
               
chr1:102756728-102756465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
64, 125
               

               
Conread position:
               
2-281
               

               
Cow position:
               
chr1:53622661-53622926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
263, 39
               

               
Conread position:
               
3-248
               

               
Cow position:
               
chr1:49795694-49795935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
78, 157
               

               
Conread position:
               
3-253
               

               
Cow position:
               
chr1:78783240-78783487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 146
               

               
Conread position:
               
3-256
               

               
Cow position:
               
chr1:81290215-81290446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
83, 38
               

               
Conread position:
               
3-258
               

               
Cow position:
               
chr1:22826861-22827108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 35
               

               
Conread position:
               
3-262
               

               
Cow position:
               
chr1:23969341-23969092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
78, 52
               

               
Conread position:
               
3-262
               

               
Cow position:
               
chr1:98360720-98360453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
3-264
               

               
Cow position:
               
chr1:4374644-4374392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
232, 144
               

               
Conread position:
               
3-264
               

               
Cow position:
               
chr1:5873279-5873024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 155
               

               
Conread position:
               
3-264
               

               
Cow position:
               
chr1:12464959-12464719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
3-264
               

               
Cow position:
               
chr1:21787017-21787277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
46, 212
               

               
Conread position:
               
3-264
               

               
Cow position:
               
chr1:24235824-24235570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
145, 83
               

               
Conread position:
               
3-264
               

               
Cow position:
               
chr1:31765701-31765440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 83
               

               
Conread position:
               
3-264
               

               
Cow position:
               
chr1:43352955-43352711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
187, 75
               

               
Conread position:
               
3-264
               

               
Cow position:
               
chr1:44125955-44125700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
58, 160
               

               
Conread position:
               
3-264
               

               
Cow position:
               
chr1:44769415-44769166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
3-264
               

               
Cow position:
               
chr1:48105742-48105487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
48, 148
               

               
Conread position:
               
3-264
               

               
Cow position:
               
chr1:61005868-61005609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
83, 40
               

               
Conread position:
               
3-264
               

               
Cow position:
               
chr1:68845786-68845538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 39
               

               
Conread position:
               
3-264
               

               
Cow position:
               
chr1:96365368-96365610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
83, 137
               

               
Conread position:
               
3-264
               

               
Cow position:
               
chr1:100400504-100400249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
3-265
               

               
Cow position:
               
chr1:7350232-7350490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 207
               

               
Conread position:
               
3-278
               

               
Cow position:
               
chr1:44164774-44165046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
150, 45
               

               
Conread position:
               
3-278
               

               
Cow position:
               
chr1:72012112-72011845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
46, 11
               

               
Conread position:
               
3-278
               

               
Cow position:
               
chr1:76222997-76222726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 146
               

               
Conread position:
               
3-278
               

               
Cow position:
               
chr1:77462060-77462324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
68, 15
               

               
Conread position:
               
3-281
               

               
Cow position:
               
chr1:41004673-41004396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 101
               

               
Conread position:
               
3-281
               

               
Cow position:
               
chr1:52329833-52329561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 17
               

               
Conread position:
               
3-281
               

               
Cow position:
               
chr1:63391078-63390804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
260, 82
               

               
Conread position:
               
3-310
               

               
Cow position:
               
chr1:33716914-33717221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 211
               

               
Conread position:
               
4-255
               

               
Cow position:
               
chr1:51394105-51394359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
37, 160
               

               
Conread position:
               
4-263
               

               
Cow position:
               
chr1:19465754-19466002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
48, 148
               

               
Conread position:
               
4-264
               

               
Cow position:
               
chr1:36613580-36613328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 146
               

               
Conread position:
               
4-264
               

               
Cow position:
               
chr1:52496471-52496730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 150
               

               
Conread position:
               
4-264
               

               
Cow position:
               
chr1:61175878-61176132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 162
               

               
Conread position:
               
4-264
               

               
Cow position:
               
chr1:100551657-100551916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
45, 153
               

               
Conread position:
               
4-278
               

               
Cow position:
               
chr1:8349612-8349353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
77, 24
               

               
Conread position:
               
4-278
               

               
Cow position:
               
chr1:101822801-101822538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
260, 76
               

               
Conread position:
               
5-255
               

               
Cow position:
               
chr1:81569340-81569093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
73, 206
               

               
Conread position:
               
5-264
               

               
Cow position:
               
chr1:44136755-44136519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
76, 46
               

               
Conread position:
               
5-264
               

               
Cow position:
               
chr1:98551416-98551663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
148, 30
               

               
Conread position:
               
5-278
               

               
Cow position:
               
chr1:41696757-41697022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 54
               

               
Conread position:
               
5-281
               

               
Cow position:
               
chr1:666056-666332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 145
               

               
Conread position:
               
6-255
               

               
Cow position:
               
chr1:8319-8560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
77, 145
               

               
Conread position:
               
6-281
               

               
Cow position:
               
chr1:94425678-94425937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
142, 40
               

               
Conread position:
               
7-265
               

               
Cow position:
               
chr1:874341-874598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 124
               

               
Conread position:
               
7-269
               

               
Cow position:
               
chr1:63596363-63596101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 193
               

               
Conread position:
               
8-262
               

               
Cow position:
               
chr1:33811633-33811874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 139
               

               
Conread position:
               
8-264
               

               
Cow position:
               
chr1:48731125-48730881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
78, 40
               

               
Conread position:
               
8-281
               

               
Cow position:
               
chr1:101547343-101547066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
76, 86
               

               
Conread position:
               
10-281
               

               
Cow position:
               
chr1:84255454-84255730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 206
               

               
Conread position:
               
13-264
               

               
Cow position:
               
chr1:100705838-100706080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
14-264
               

               
Cow position:
               
chr1:24528892-24528661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
15-281
               

               
Cow position:
               
chr1:81472585-81472840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
73, 124
               

               
Conread position:
               
16-286
               

               
Cow position:
               
chr1:34000612-34000885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 197
               

               
Conread position:
               
17-278
               

               
Cow position:
               
chr1:61724315-61724058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
69, 14
               

               
Conread position:
               
17-281
               

               
Cow position:
               
chr1:71946662-71946408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
246, 127
               

               
Conread position:
               
19-278
               

               
Cow position:
               
chr1:91142445-91142192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
41, 68
               

               
Conread position:
               
20-264
               

               
Cow position:
               
chr1:97755237-97755463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
65, 44
               

               
Conread position:
               
21-261
               

               
Cow position:
               
chr1:60032886-60032654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
66, 76
               

               
Conread position:
               
21-264
               

               
Cow position:
               
chr1:90640737-90640978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 137
               

               
Conread position:
               
27-258
               

               
Cow position:
               
chr1:27358659-27358891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
34, 188
               

               
Conread position:
               
30-278
               

               
Cow position:
               
chr1:98708164-98708404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
23, 15
               

               
Conread position:
               
31-264
               

               
Cow position:
               
chr1:72286327-72286110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
31-274
               

               
Cow position:
               
chr1:99642649-99642406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
8, 182
               

               
Conread position:
               
32-264
               

               
Cow position:
               
chr1:101007892-101007673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
17, 77
               

               
Conread position:
               
33-253
               

               
Cow position:
               
chr1:38278324-38278098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
8, 118
               

               
Conread position:
               
33-263
               

               
Cow position:
               
chr1:99609090-99609314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
8, 17
               

               
Conread position:
               
34-254
               

               
Cow position:
               
chr1:32631195-32631404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
34-255
               

               
Cow position:
               
chr1:99638055-99637840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
47, 141
               

               
Conread position:
               
35-264
               

               
Cow position:
               
chr1:89510206-89509976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
118, 149
               

               
Conread position:
               
35-284
               

               
Cow position:
               
chr1:1403744-1403511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
66, 58
               

               
Conread position:
               
36-264
               

               
Cow position:
               
chr1:31348186-31347969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
13, 54
               

               
Conread position:
               
36-278
               

               
Cow position:
               
chr1:53369798-53370045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
108, 6
               

               
Conread position:
               
37-278
               

               
Cow position:
               
chr1:4032364-4032592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
37-278
               

               
Cow position:
               
chr1:84240628-84240856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
229, 110
               

               
Conread position:
               
39-274
               

               
Cow position:
               
chr1:5409884-5409654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
30, 20
               

               
Conread position:
               
40-264
               

               
Cow position:
               
chr1:99095096-99095309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
41, 15
               

               
Conread position:
               
42-264
               

               
Cow position:
               
chr1:56711883-56711672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
106, 6
               

               
Conread position:
               
43-278
               

               
Cow position:
               
chr1:96478427-96478661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
5, 108
               

               
Conread position:
               
44-248
               

               
Cow position:
               
chr1:13614984-13614782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
37, 82
               

               
Conread position:
               
44-281
               

               
Cow position:
               
chr1:78810770-78811004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
8, 166
               

               
Conread position:
               
45-274
               

               
Cow position:
               
chr1:60707139-60707363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
36, 155
               

               
Conread position:
               
46-255
               

               
Cow position:
               
chr1:52488221-52488023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
46-278
               

               
Cow position:
               
chr1:90864563-90864329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 171
               

               
Conread position:
               
48-263
               

               
Cow position:
               
chr1:57639781-57639576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
105, 136
               

               
Conread position:
               
48-264
               

               
Cow position:
               
chr1:45535441-45535652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
38, 46
               

               
Conread position:
               
48-278
               

               
Cow position:
               
chr1:41252664-41252443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
38, 160
               

               
Conread position:
               
48-278
               

               
Cow position:
               
chr1:48580869-48581095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
37, 101
               

               
Conread position:
               
48-278
               

               
Cow position:
               
chr1:54478061-54478288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
33, 109
               

               
Conread position:
               
48-278
               

               
Cow position:
               
chr1:82338046-82337817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
31, 69
               

               
Conread position:
               
48-278
               

               
Cow position:
               
chr1:84116141-84116360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
210, 88
               

               
Conread position:
               
48-281
               

               
Cow position:
               
chr1:80899847-80900084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
105, 170
               

               
Conread position:
               
49-264
               

               
Cow position:
               
chr1:13413767-13413976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
108, 142
               

               
Conread position:
               
49-278
               

               
Cow position:
               
chr1:68951372-68951591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
35, 23
               

               
Conread position:
               
49-278
               

               
Cow position:
               
chr1:97806532-97806752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
37, 67
               

               
Conread position:
               
51-264
               

               
Cow position:
               
chr1:42555012-42555210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
51-274
               

               
Cow position:
               
chr1:79165350-79165125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
35, 162
               

               
Conread position:
               
51-278
               

               
Cow position:
               
chr1:4290900-4291124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
23, 94
               

               
Conread position:
               
51-278
               

               
Cow position:
               
chr1:64251307-64251090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
97, 35
               

               
Conread position:
               
51-278
               

               
Cow position:
               
chr1:76470401-76470619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
35, 97
               

               
Conread position:
               
52-245
               

               
Cow position:
               
chr1:87216203-87216389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
9, 81
               

               
Conread position:
               
53-255
               

               
Cow position:
               
chr1:56748334-56748532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
95, 157
               

               
Conread position:
               
53-264
               

               
Cow position:
               
chr1:57264242-57264049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
53-264
               

               
Cow position:
               
chr1:57635211-57635408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
53-264
               

               
Cow position:
               
chr1:75744604-75744807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
33, 96
               

               
Conread position:
               
53-265
               

               
Cow position:
               
chr1:72141308-72141511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
34, 96
               

               
Conread position:
               
53-278
               

               
Cow position:
               
chr1:6941210-6941427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
211, 95
               

               
Conread position:
               
53-278
               

               
Cow position:
               
chr1:6958623-6958840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
211, 95
               

               
Conread position:
               
53-278
               

               
Cow position:
               
chr1:21835692-21835907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
32, 102
               

               
Conread position:
               
53-278
               

               
Cow position:
               
chr1:81868983-81868764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
29, 99
               

               
Conread position:
               
53-281
               

               
Cow position:
               
chr1:68818052-68817832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
213, 33
               

               
Conread position:
               
54-264
               

               
Cow position:
               
chr1:61246406-61246212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
55-246
               

               
Cow position:
               
chr1:88970809-88970988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
55-264
               

               
Cow position:
               
chr1:57396183-57395983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
26, 96
               

               
Conread position:
               
55-264
               

               
Cow position:
               
chr1:64160087-64160287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
55-265
               

               
Cow position:
               
chr1:34856883-34856684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
31, 92
               

               
Conread position:
               
55-278
               

               
Cow position:
               
chr1:68827159-68826941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
209, 93
               

               
Conread position:
               
55-290
               

               
Cow position:
               
chr1:3757698-3757930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
27, 110
               

               
Conread position:
               
56-263
               

               
Cow position:
               
chr1:19545348-19545153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
106, 20
               

               
Conread position:
               
56-278
               

               
Cow position:
               
chr1:14379783-14379571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
32, 68
               

               
Conread position:
               
57-256
               

               
Cow position:
               
chr1:96713066-96712872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
29, 93
               

               
Conread position:
               
57-258
               

               
Cow position:
               
chr1:81363742-81363925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
57-264
               

               
Cow position:
               
chr1:11770545-11770343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
152, 0
               

               
Conread position:
               
57-278
               

               
Cow position:
               
chr1:3776866-3776654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
30, 92
               

               
Conread position:
               
57-281
               

               
Cow position:
               
chr1:45555110-45555331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
52, 31
               

               
Conread position:
               
58-264
               

               
Cow position:
               
chr1:89395340-89395548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 159
               

               
Conread position:
               
58-274
               

               
Cow position:
               
chr1:47233726-47233519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
25, 89
               

               
Conread position:
               
58-278
               

               
Cow position:
               
chr1:75967185-75967395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
29, 90
               

               
Conread position:
               
58-281
               

               
Cow position:
               
chr1:1185488-1185704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
23, 91
               

               
Conread position:
               
59-245
               

               
Cow position:
               
chr1:77891563-77891745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
27, 82
               

               
Conread position:
               
59-264
               

               
Cow position:
               
chr1:50679536-50679336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
22, 90
               

               
Conread position:
               
59-264
               

               
Cow position:
               
chr1:81563483-81563683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
23, 57
               

               
Conread position:
               
59-277
               

               
Cow position:
               
chr1:36931909-36932120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
27, 96
               

               
Conread position:
               
59-278
               

               
Cow position:
               
chr1:24655710-24655925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 36
               

               
Conread position:
               
60-254
               

               
Cow position:
               
chr1:74013516-74013322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
26, 96
               

               
Conread position:
               
60-278
               

               
Cow position:
               
chr1:49839257-49839469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
26, 90
               

               
Conread position:
               
61-261
               

               
Cow position:
               
chr1:70538355-70538551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
21, 98
               

               
Conread position:
               
61-274
               

               
Cow position:
               
chr1:93528442-93528658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
25, 153
               

               
Conread position:
               
62-278
               

               
Cow position:
               
chr1:56477348-56477551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
192, 87
               

               
Conread position:
               
63-256
               

               
Cow position:
               
chr1:4293818-4293994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
63-256
               

               
Cow position:
               
chr1:51531527-51531706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
24, 73
               

               
Conread position:
               
63-262
               

               
Cow position:
               
chr1:98594325-98594523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
138, 91
               

               
Conread position:
               
63-278
               

               
Cow position:
               
chr1:63905720-63905508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
23, 68
               

               
Conread position:
               
64-264
               

               
Cow position:
               
chr1:71119266-71119463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
22, 62
               

               
Conread position:
               
64-264
               

               
Cow position:
               
chr1:84239352-84239166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
22, 84
               

               
Conread position:
               
65-256
               

               
Cow position:
               
chr1:51445635-51445819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
16, 80
               

               
Conread position:
               
65-264
               

               
Cow position:
               
chr1:30504227-30504418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
92, 110
               

               
Conread position:
               
65-278
               

               
Cow position:
               
chr1:10655233-10655448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
16, 148
               

               
Conread position:
               
66-278
               

               
Cow position:
               
chr1:20799629-20799849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
20, 154
               

               
Conread position:
               
67-264
               

               
Cow position:
               
chr1:54732699-54732521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
15, 11
               

               
Conread position:
               
68-274
               

               
Cow position:
               
chr1:70434751-70434957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
18, 149
               

               
Conread position:
               
68-278
               

               
Cow position:
               
chr1:20287876-20288082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
84, 18
               

               
Conread position:
               
68-278
               

               
Cow position:
               
chr1:31235175-31234967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
17, 145
               

               
Conread position:
               
69-264
               

               
Cow position:
               
chr1:7442745-7442930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
18, 24
               

               
Conread position:
               
69-264
               

               
Cow position:
               
chr1:71079193-71079011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
97, 17
               

               
Conread position:
               
69-278
               

               
Cow position:
               
chr1:95056815-95057017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
15, 80
               

               
Conread position:
               
70-278
               

               
Cow position:
               
chr1:40531348-40531149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
14, 34
               

               
Conread position:
               
72-264
               

               
Cow position:
               
chr1:71818699-71818511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
13, 138
               

               
Conread position:
               
76-279
               

               
Cow position:
               
chr1:100512363-100512564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
184, 70
               

               
Conread position:
               
77-264
               

               
Cow position:
               
chr1:43389280-43389104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
5, 80
               

               
Conread position:
               
77-278
               

               
Cow position:
               
chr1:15333650-15333848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
76, 12
               

               
Conread position:
               
78-264
               

               
Cow position:
               
chr1:43358245-43358065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
78-278
               

               
Cow position:
               
chr1:6305097-6304899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
76, 10
               

               
Conread position:
               
79-262
               

               
Cow position:
               
chr1:3429738-3429564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
26, 62
               

               
Conread position:
               
79-275
               

               
Cow position:
               
chr1:86484727-86484926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
74, 14
               

               
Conread position:
               
80-263
               

               
Cow position:
               
chr1:7449903-7450076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
12, 67
               

               
Conread position:
               
80-264
               

               
Cow position:
               
chr1:56634870-56635042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
76, 93
               

               
Conread position:
               
80-264
               

               
Cow position:
               
chr1:78809655-78809827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
80-278
               

               
Cow position:
               
chr1:79278670-79278483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
184, 39
               

               
Conread position:
               
80-281
               

               
Cow position:
               
chr1:64804336-64804138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
73, 131
               

               
Conread position:
               
80-281
               

               
Cow position:
               
chr1:89076864-89076662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
73, 40
               

               
Conread position:
               
81-261
               

               
Cow position:
               
chr1:7186560-7186739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
67, 75
               

               
Conread position:
               
81-278
               

               
Cow position:
               
chr1:26200993-26201183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
182, 67
               

               
Conread position:
               
86-274
               

               
Cow position:
               
chr1:55194686-55194504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
172, 62
               

               
Conread position:
               
86-278
               

               
Cow position:
               
chr1:34771726-34771541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
86, 61
               

               
Conread position:
               
87-274
               

               
Cow position:
               
chr1:52956038-52956213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
177, 61
               

               
Conread position:
               
89-278
               

               
Cow position:
               
chr1:45673492-45673673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
175, 35
               

               
Conread position:
               
90-262
               

               
Cow position:
               
chr1:86504936-86504761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
124, 47
               

               
Conread position:
               
90-278
               

               
Cow position:
               
chr1:98310842-98311032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
15, 123
               

               
Conread position:
               
92-278
               

               
Cow position:
               
chr1:40482628-40482441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
122, 23
               

               
Conread position:
               
93-264
               

               
Cow position:
               
chr1:74956239-74956074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
94-234
               

               
Cow position:
               
chr1:98557998-98557859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
63, 119
               

               
Conread position:
               
99-264
               

               
Cow position:
               
chr1:75382782-75382941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
54, 115
               

               
Conread position:
               
99-264
               

               
Cow position:
               
chr1:90976292-90976138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
99-274
               

               
Cow position:
               
chr1:41954463-41954285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
87, 51
               

               
Conread position:
               
100-258
               

               
Cow position:
               
chr1:72103638-72103790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
101-264
               

               
Cow position:
               
chr1:32013749-32013903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
75, 46
               

               
Conread position:
               
103-264
               

               
Cow position:
               
chr1:6788495-6788339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
45, 106
               

               
Conread position:
               
108-264
               

               
Cow position:
               
chr1:43340823-43340665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
108-264
               

               
Cow position:
               
chr1:63138638-63138788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
108-278
               

               
Cow position:
               
chr1:28563769-28563609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
108-278
               

               
Cow position:
               
chr1:46030553-46030392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
155, 34
               

               
Conread position:
               
108-278
               

               
Cow position:
               
chr1:49753730-49753892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
152, 41
               

               
Conread position:
               
109-278
               

               
Cow position:
               
chr1:81470929-81471096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
51, 100
               

               
Conread position:
               
110-278
               

               
Cow position:
               
chr1:51654212-51654375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
154, 38
               

               
Conread position:
               
110-281
               

               
Cow position:
               
chr1:18697551-18697380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
38, 105
               

               
Conread position:
               
111-278
               

               
Cow position:
               
chr1:43872532-43872367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
42, 100
               

               
Conread position:
               
114-274
               

               
Cow position:
               
chr1:25734659-25734828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
115-265
               

               
Cow position:
               
chr1:82443650-82443508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
119-265
               

               
Cow position:
               
chr1:71227887-71228034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
120-264
               

               
Cow position:
               
chr1:57880981-57880839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
33, 92
               

               
Conread position:
               
120-278
               

               
Cow position:
               
chr1:33207063-33206912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
33, 80
               

               
Conread position:
               
120-278
               

               
Cow position:
               
chr1:54156929-54156770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
146, 0
               

               
Conread position:
               
122-254
               

               
Cow position:
               
chr1:89082921-89083047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
31, 42
               

               
Conread position:
               
122-281
               

               
Cow position:
               
chr1:42398383-42398227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
141, 25
               

               
Conread position:
               
124-256
               

               
Cow position:
               
chr1:86578764-86578889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
36, 24
               

               
Conread position:
               
124-278
               

               
Cow position:
               
chr1:68763866-68763720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
141, 24
               

               
Conread position:
               
130-278
               

               
Cow position:
               
chr1:20667920-20667778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
134, 18
               

               
Conread position:
               
131-281
               

               
Cow position:
               
chr1:32596276-32596425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
126, 17
               

               
Conread position:
               
146-255
               

               
Cow position:
               
chr1:9166942-9166831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
160-278
               

               
Cow position:
               
chr1:65909375-65909491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
104, 49
               
Show alignments to all cow chromosomes.