Cow genome map
| Conread name: | Pig4-TMW8018L06 |
| Conread position: | 1-177 |
| Cow position: | chr12:6954597-6954774 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 22, 51 |
| Conread position: | 6-182 |
| Cow position: | chr12:22480416-22480588 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 75, 12 |
| Conread position: | 6-191 |
| Cow position: | chr12:250029-249849 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 77, 12 |
| Conread position: | 6-191 |
| Cow position: | chr12:10931372-10931558 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 15, 45 |
| Conread position: | 6-191 |
| Cow position: | chr12:28571666-28571847 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 77, 44 |
| Conread position: | 6-191 |
| Cow position: | chr12:48416454-48416271 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 75, 11 |
| Conread position: | 6-192 |
| Cow position: | chr12:3716986-3716800 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 15, 45 |
| Conread position: | 6-724 |
| Cow position: | chr12:35311630-35310888 (view UCSC Genome Browser custom track) |
| Alignm length: | 761 |
| Alignm identity: | 521 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 44 |
| Conread position: | 7-186 |
| Cow position: | chr12:22686779-22686954 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 77, 43 |
| Conread position: | 7-215 |
| Cow position: | chr12:47803448-47803649 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 19, 45 |
| Conread position: | 11-430 |
| Cow position: | chr12:22253887-22254312 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 291 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 70, 10 |
| Conread position: | 12-181 |
| Cow position: | chr12:11101542-11101710 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 66, 38 |
| Conread position: | 12-181 |
| Cow position: | chr12:41337939-41337770 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 9, 39 |
| Conread position: | 12-182 |
| Cow position: | chr12:3070149-3070321 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 69, 38 |
| Conread position: | 12-182 |
| Cow position: | chr12:24029189-24029019 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 9, 39 |
| Conread position: | 12-186 |
| Cow position: | chr12:21484696-21484868 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 99, 40 |
| Conread position: | 12-191 |
| Cow position: | chr12:6186855-6186677 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 72, 38 |
| Conread position: | 12-191 |
| Cow position: | chr12:23475045-23475222 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 76, 38 |
| Conread position: | 12-191 |
| Cow position: | chr12:27506355-27506177 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 69, 38 |
| Conread position: | 12-191 |
| Cow position: | chr12:30016776-30016601 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 69, 38 |
| Conread position: | 12-191 |
| Cow position: | chr12:31329035-31328857 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 73, 38 |
| Conread position: | 12-191 |
| Cow position: | chr12:43681299-43681477 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 69, 38 |
| Conread position: | 12-332 |
| Cow position: | chr12:19198326-19198666 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 37 |
| Conread position: | 12-721 |
| Cow position: | chr12:25096971-25096267 (view UCSC Genome Browser custom track) |
| Alignm length: | 728 |
| Alignm identity: | 506 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 38 |
| Conread position: | 17-180 |
| Cow position: | chr12:10790947-10790785 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 64, 33 |
| Conread position: | 17-180 |
| Cow position: | chr12:21452678-21452516 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 64, 33 |
| Conread position: | 17-180 |
| Cow position: | chr12:25313414-25313252 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 64, 33 |
| Conread position: | 17-181 |
| Cow position: | chr12:22202382-22202219 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 67, 33 |
| Conread position: | 17-181 |
| Cow position: | chr12:29485361-29485197 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 67, 33 |
| Conread position: | 17-183 |
| Cow position: | chr12:3094324-3094158 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 67, 37 |
| Conread position: | 17-191 |
| Cow position: | chr12:8773963-8774136 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 64, 33 |
| Conread position: | 17-192 |
| Cow position: | chr12:17718600-17718772 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 66, 33 |
| Conread position: | 17-192 |
| Cow position: | chr12:28012932-28012758 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 64, 33 |
| Conread position: | 17-192 |
| Cow position: | chr12:32147330-32147156 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 70, 33 |
| Conread position: | 17-192 |
| Cow position: | chr12:32656848-32657022 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 64, 35 |
| Conread position: | 17-194 |
| Cow position: | chr12:12928611-12928435 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 64, 33 |
| Conread position: | 17-197 |
| Cow position: | chr12:1345372-1345560 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 45, 33 |
| Conread position: | 17-205 |
| Cow position: | chr12:5713263-5713454 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 64, 33 |
| Conread position: | 17-629 |
| Cow position: | chr12:26823418-26824018 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 29 |
| Conread position: | 17-721 |
| Cow position: | chr12:31261110-31260401 (view UCSC Genome Browser custom track) |
| Alignm length: | 730 |
| Alignm identity: | 528 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 33 |
| Conread position: | 19-468 |
| Cow position: | chr12:45540695-45541152 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 33 |
| Conread position: | 32-191 |
| Cow position: | chr12:20459408-20459250 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 49, 18 |
| Conread position: | 44-191 |
| Cow position: | chr12:22286614-22286463 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 59-183 |
| Cow position: | chr12:5904868-5904996 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 59-191 |
| Cow position: | chr12:40867669-40867805 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 60-191 |
| Cow position: | chr12:38774430-38774561 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 39, 21 |
| Conread position: | 60-385 |
| Cow position: | chr12:25143391-25143050 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 240 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 24, 241 |
| Conread position: | 211-777 |
| Cow position: | chr12:5146097-5146677 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 77 |
| Conread position: | 214-732 |
| Cow position: | chr12:15231560-15232081 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 353, 73 |
| Conread position: | 274-778 |
| Cow position: | chr12:28572056-28572544 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 397, 68 |
| Conread position: | 350-774 |
| Cow position: | chr12:31430148-31429722 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 291 |
| Conread position: | 361-735 |
| Cow position: | chr12:39356743-39357114 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 318, 91 |
| Conread position: | 381-735 |
| Cow position: | chr12:31261314-31261668 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 237, 15 |
| Conread position: | 457-735 |
| Cow position: | chr12:26526907-26527176 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 216, 138 |
| Conread position: | 461-779 |
| Cow position: | chr12:36501417-36501097 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 259, 45 |
| Conread position: | 467-785 |
| Cow position: | chr12:30918965-30919277 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 223 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 217, 134 |
| Conread position: | 496-735 |
| Cow position: | chr12:6240865-6241105 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 13, 35 |
| Conread position: | 512-735 |
| Cow position: | chr12:15089065-15089290 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 153, 133 |
Show alignments to all cow chromosomes.