Cow genome map
| Conread name: | Pig4-TMW8018L06 |
| Conread position: | 5-190 |
| Cow position: | chr18:7649038-7649223 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 13, 45 |
| Conread position: | 5-210 |
| Cow position: | chr18:36771155-36770942 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 19, 175 |
| Conread position: | 6-181 |
| Cow position: | chr18:35293504-35293678 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 9, 45 |
| Conread position: | 6-191 |
| Cow position: | chr18:14127894-14127714 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 75, 12 |
| Conread position: | 6-191 |
| Cow position: | chr18:46869540-46869718 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 75, 44 |
| Conread position: | 6-192 |
| Cow position: | chr18:52629866-52629684 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 75, 11 |
| Conread position: | 7-183 |
| Cow position: | chr18:44261446-44261630 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 18, 67 |
| Conread position: | 7-191 |
| Cow position: | chr18:2853409-2853215 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 18, 40 |
| Conread position: | 7-191 |
| Cow position: | chr18:5076788-5076611 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 82, 18 |
| Conread position: | 7-193 |
| Cow position: | chr18:36477170-36477351 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 9, 44 |
| Conread position: | 12-170 |
| Cow position: | chr18:6104009-6103853 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 69, 9 |
| Conread position: | 12-170 |
| Cow position: | chr18:29059426-29059269 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 74, 40 |
| Conread position: | 12-172 |
| Cow position: | chr18:33522614-33522772 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 73, 23 |
| Conread position: | 12-180 |
| Cow position: | chr18:14419372-14419539 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 69, 38 |
| Conread position: | 12-180 |
| Cow position: | chr18:16173220-16173051 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 9, 40 |
| Conread position: | 12-181 |
| Cow position: | chr18:6733570-6733402 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 71, 38 |
| Conread position: | 12-181 |
| Cow position: | chr18:37509357-37509525 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 69, 38 |
| Conread position: | 12-181 |
| Cow position: | chr18:38158147-38157979 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 69, 40 |
| Conread position: | 12-181 |
| Cow position: | chr18:41837695-41837527 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 69, 38 |
| Conread position: | 12-181 |
| Cow position: | chr18:43430401-43430566 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 71, 38 |
| Conread position: | 12-182 |
| Cow position: | chr18:5536367-5536537 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 71, 42 |
| Conread position: | 12-182 |
| Cow position: | chr18:8965689-8965855 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 81, 9 |
| Conread position: | 12-182 |
| Cow position: | chr18:12269548-12269716 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 69, 42 |
| Conread position: | 12-182 |
| Cow position: | chr18:29240716-29240883 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 69, 38 |
| Conread position: | 12-182 |
| Cow position: | chr18:36776671-36776840 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 72, 38 |
| Conread position: | 12-191 |
| Cow position: | chr18:1022627-1022449 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 73, 38 |
| Conread position: | 12-191 |
| Cow position: | chr18:17943906-17944083 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 9, 39 |
| Conread position: | 12-191 |
| Cow position: | chr18:25354916-25355094 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 72, 38 |
| Conread position: | 12-191 |
| Cow position: | chr18:28968894-28968716 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 66, 38 |
| Conread position: | 12-191 |
| Cow position: | chr18:29863209-29863031 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 71, 38 |
| Conread position: | 12-191 |
| Cow position: | chr18:51484983-51485160 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 72, 21 |
| Conread position: | 12-191 |
| Cow position: | chr18:52656189-52656367 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 69, 38 |
| Conread position: | 12-192 |
| Cow position: | chr18:7963955-7964129 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 12-192 |
| Cow position: | chr18:23659500-23659323 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 69, 38 |
| Conread position: | 12-192 |
| Cow position: | chr18:27990152-27990331 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 69, 38 |
| Conread position: | 12-192 |
| Cow position: | chr18:36648791-36648967 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 72, 9 |
| Conread position: | 12-196 |
| Cow position: | chr18:24219297-24219114 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 69, 38 |
| Conread position: | 12-332 |
| Cow position: | chr18:15172243-15172582 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 65, 38 |
| Conread position: | 13-171 |
| Cow position: | chr18:36223835-36223987 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 98, 37 |
| Conread position: | 13-182 |
| Cow position: | chr18:37692884-37692721 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 132 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 98, 37 |
| Conread position: | 13-190 |
| Cow position: | chr18:12241221-12241389 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 82, 18 |
| Conread position: | 13-203 |
| Cow position: | chr18:35057421-35057607 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 76, 37 |
| Conread position: | 14-179 |
| Cow position: | chr18:23701406-23701242 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 67, 36 |
| Conread position: | 14-554 |
| Cow position: | chr18:16471799-16471244 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 7 |
| Conread position: | 17-180 |
| Cow position: | chr18:43464372-43464209 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 64, 33 |
| Conread position: | 17-183 |
| Cow position: | chr18:13508669-13508503 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 68, 33 |
| Conread position: | 17-191 |
| Cow position: | chr18:17335341-17335169 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 137 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 67, 33 |
| Conread position: | 17-191 |
| Cow position: | chr18:21199704-21199532 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 68, 33 |
| Conread position: | 17-191 |
| Cow position: | chr18:23802423-23802596 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 64, 33 |
| Conread position: | 17-191 |
| Cow position: | chr18:30035329-30035159 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 67, 33 |
| Conread position: | 17-191 |
| Cow position: | chr18:32210412-32210239 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 67, 33 |
| Conread position: | 17-191 |
| Cow position: | chr18:42466944-42466774 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 67, 33 |
| Conread position: | 17-192 |
| Cow position: | chr18:603064-602890 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 64, 33 |
| Conread position: | 17-192 |
| Cow position: | chr18:23688572-23688746 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 64, 33 |
| Conread position: | 17-192 |
| Cow position: | chr18:24037446-24037272 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 64, 33 |
| Conread position: | 17-192 |
| Cow position: | chr18:26243058-26242885 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 71, 32 |
| Conread position: | 17-192 |
| Cow position: | chr18:30607096-30607270 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 64, 33 |
| Conread position: | 17-192 |
| Cow position: | chr18:32164531-32164357 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 67, 33 |
| Conread position: | 17-192 |
| Cow position: | chr18:42628764-42628938 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 64, 33 |
| Conread position: | 17-192 |
| Cow position: | chr18:47745153-47745327 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 64, 33 |
| Conread position: | 17-192 |
| Cow position: | chr18:51580385-51580211 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 64, 33 |
| Conread position: | 17-192 |
| Cow position: | chr18:51602265-51602091 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 64, 33 |
| Conread position: | 17-192 |
| Cow position: | chr18:51690197-51690371 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 64, 33 |
| Conread position: | 17-192 |
| Cow position: | chr18:52574501-52574675 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 64, 33 |
| Conread position: | 17-192 |
| Cow position: | chr18:55554651-55554825 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 64, 33 |
| Conread position: | 17-208 |
| Cow position: | chr18:29797685-29797495 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 67, 33 |
| Conread position: | 17-208 |
| Cow position: | chr18:33850929-33851118 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 64, 34 |
| Conread position: | 17-775 |
| Cow position: | chr18:2439654-2438868 (view UCSC Genome Browser custom track) |
| Alignm length: | 801 |
| Alignm identity: | 536 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 35 |
| Conread position: | 17-784 |
| Cow position: | chr18:37334198-37334971 (view UCSC Genome Browser custom track) |
| Alignm length: | 798 |
| Alignm identity: | 534 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 33 |
| Conread position: | 36-182 |
| Cow position: | chr18:31564052-31563909 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 45, 14 |
| Conread position: | 62-195 |
| Cow position: | chr18:9364990-9365124 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 24, 77 |
| Conread position: | 179-446 |
| Cow position: | chr18:37398587-37398853 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 170, 105 |
| Conread position: | 214-735 |
| Cow position: | chr18:25003578-25003074 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 74 |
| Conread position: | 234-779 |
| Cow position: | chr18:601860-601319 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 53 |
| Conread position: | 245-735 |
| Cow position: | chr18:11190732-11191235 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 27 |
| Conread position: | 259-740 |
| Cow position: | chr18:7955480-7955949 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 28 |
| Conread position: | 279-747 |
| Cow position: | chr18:22874217-22874687 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 8 |
| Conread position: | 382-733 |
| Cow position: | chr18:26844198-26843848 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 10 |
| Conread position: | 455-735 |
| Cow position: | chr18:50993746-50993468 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 40 |
| Conread position: | 456-737 |
| Cow position: | chr18:49161926-49161652 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 226, 50 |
| Conread position: | 469-785 |
| Cow position: | chr18:45570571-45570880 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 231 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 204, 37 |
| Conread position: | 520-735 |
| Cow position: | chr18:21751891-21752105 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 157, 117 |
Show alignments to all cow chromosomes.