Cow genome map
| Conread name: | Pig4-TMW8018L06 |
| Conread position: | 3-503 |
| Cow position: | chr24:29179732-29180262 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 345 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 22, 69 |
| Conread position: | 6-180 |
| Cow position: | chr24:18267106-18266939 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 10, 45 |
| Conread position: | 6-191 |
| Cow position: | chr24:5910198-5910382 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 14, 46 |
| Conread position: | 6-191 |
| Cow position: | chr24:32823742-32823558 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 10, 45 |
| Conread position: | 6-197 |
| Cow position: | chr24:13235650-13235836 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 82, 12 |
| Conread position: | 7-177 |
| Cow position: | chr24:31356966-31357141 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 15, 24 |
| Conread position: | 7-183 |
| Cow position: | chr24:17368552-17368367 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 12-171 |
| Cow position: | chr24:16646542-16646389 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 99, 20 |
| Conread position: | 12-180 |
| Cow position: | chr24:7749013-7749174 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 69, 38 |
| Conread position: | 12-180 |
| Cow position: | chr24:28688798-28688965 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 69, 38 |
| Conread position: | 12-180 |
| Cow position: | chr24:33122313-33122480 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 72, 38 |
| Conread position: | 12-181 |
| Cow position: | chr24:6412865-6413033 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 69, 38 |
| Conread position: | 12-182 |
| Cow position: | chr24:32608698-32608867 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 69, 38 |
| Conread position: | 12-183 |
| Cow position: | chr24:27762630-27762803 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 80, 38 |
| Conread position: | 12-191 |
| Cow position: | chr24:144967-144789 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 69, 38 |
| Conread position: | 12-191 |
| Cow position: | chr24:5862968-5862789 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 76, 38 |
| Conread position: | 12-191 |
| Cow position: | chr24:6035794-6035616 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 72, 38 |
| Conread position: | 12-191 |
| Cow position: | chr24:16558893-16558720 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 99, 38 |
| Conread position: | 12-191 |
| Cow position: | chr24:17544557-17544379 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 76, 40 |
| Conread position: | 12-191 |
| Cow position: | chr24:17566231-17566408 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 77, 38 |
| Conread position: | 12-191 |
| Cow position: | chr24:18223094-18222914 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 69, 38 |
| Conread position: | 12-191 |
| Cow position: | chr24:22975195-22975372 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 69, 16 |
| Conread position: | 12-191 |
| Cow position: | chr24:30870582-30870404 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 67, 38 |
| Conread position: | 12-191 |
| Cow position: | chr24:32853599-32853777 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 72, 38 |
| Conread position: | 12-191 |
| Cow position: | chr24:34760896-34761073 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 72, 38 |
| Conread position: | 12-191 |
| Cow position: | chr24:38588170-38588347 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 72, 38 |
| Conread position: | 12-192 |
| Cow position: | chr24:9549650-9549828 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 69, 38 |
| Conread position: | 13-191 |
| Cow position: | chr24:9071459-9071282 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 68, 37 |
| Conread position: | 14-191 |
| Cow position: | chr24:16056475-16056301 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 75, 36 |
| Conread position: | 14-191 |
| Cow position: | chr24:45086911-45087087 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 44, 36 |
| Conread position: | 14-192 |
| Cow position: | chr24:39067479-39067302 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 67, 36 |
| Conread position: | 15-192 |
| Cow position: | chr24:40347686-40347510 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 36, 47 |
| Conread position: | 16-183 |
| Cow position: | chr24:28497744-28497578 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 65, 30 |
| Conread position: | 17-181 |
| Cow position: | chr24:40036562-40036399 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 66, 33 |
| Conread position: | 17-182 |
| Cow position: | chr24:36028123-36027959 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 67, 33 |
| Conread position: | 17-183 |
| Cow position: | chr24:39482562-39482723 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 94, 33 |
| Conread position: | 17-190 |
| Cow position: | chr24:6415555-6415726 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 72, 25 |
| Conread position: | 17-191 |
| Cow position: | chr24:14760285-14760458 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 67, 33 |
| Conread position: | 17-191 |
| Cow position: | chr24:22047677-22047504 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 64, 33 |
| Conread position: | 17-191 |
| Cow position: | chr24:25677103-25677274 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 63, 35 |
| Conread position: | 17-191 |
| Cow position: | chr24:29064577-29064404 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 72, 33 |
| Conread position: | 17-192 |
| Cow position: | chr24:5929171-5929345 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 67, 33 |
| Conread position: | 17-192 |
| Cow position: | chr24:11104760-11104586 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 67, 33 |
| Conread position: | 17-192 |
| Cow position: | chr24:14250192-14250018 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 64, 33 |
| Conread position: | 17-192 |
| Cow position: | chr24:15296507-15296681 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 67, 33 |
| Conread position: | 17-192 |
| Cow position: | chr24:17161586-17161412 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 64, 33 |
| Conread position: | 17-192 |
| Cow position: | chr24:20604141-20604315 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 64, 33 |
| Conread position: | 17-192 |
| Cow position: | chr24:30681741-30681567 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 64, 33 |
| Conread position: | 17-194 |
| Cow position: | chr24:6067951-6067776 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 64, 33 |
| Conread position: | 17-204 |
| Cow position: | chr24:16266841-16267031 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 64, 33 |
| Conread position: | 17-421 |
| Cow position: | chr24:19643682-19644093 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 18 |
| Conread position: | 17-446 |
| Cow position: | chr24:14745752-14746199 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 318 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 65, 33 |
| Conread position: | 17-479 |
| Cow position: | chr24:30893476-30892994 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 33 |
| Conread position: | 18-181 |
| Cow position: | chr24:17752853-17752691 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 70, 32 |
| Conread position: | 19-181 |
| Cow position: | chr24:20283818-20283657 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 62, 31 |
| Conread position: | 24-191 |
| Cow position: | chr24:5608421-5608255 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 65, 26 |
| Conread position: | 32-204 |
| Cow position: | chr24:36131801-36131632 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 48, 18 |
| Conread position: | 214-735 |
| Cow position: | chr24:32823505-32822973 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 47 |
| Conread position: | 220-774 |
| Cow position: | chr24:32125321-32124776 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 67 |
| Conread position: | 225-742 |
| Cow position: | chr24:33371877-33372367 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 54 |
| Conread position: | 285-778 |
| Cow position: | chr24:18971139-18970643 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 15 |
| Conread position: | 417-735 |
| Cow position: | chr24:24002477-24002785 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 265, 89 |
| Conread position: | 448-777 |
| Cow position: | chr24:2731049-2730705 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 239 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 138, 58 |
| Conread position: | 556-778 |
| Cow position: | chr24:18405672-18405452 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 123, 81 |
Show alignments to all cow chromosomes.