Cow genome map
| Conread name: | Pig4-TMW8018L06 |
| Conread position: | 5-183 |
| Cow position: | chr25:2516079-2516252 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 127 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 106, 45 |
| Conread position: | 6-172 |
| Cow position: | chr25:33574660-33574495 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 75, 46 |
| Conread position: | 6-181 |
| Cow position: | chr25:35446023-35446196 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 75, 44 |
| Conread position: | 6-190 |
| Cow position: | chr25:7800090-7800278 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 53, 44 |
| Conread position: | 6-192 |
| Cow position: | chr25:19923599-19923784 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 75, 44 |
| Conread position: | 7-182 |
| Cow position: | chr25:20613609-20613788 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 18, 53 |
| Conread position: | 12-168 |
| Cow position: | chr25:23393954-23394104 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 99, 13 |
| Conread position: | 12-171 |
| Cow position: | chr25:18072309-18072467 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 69, 38 |
| Conread position: | 12-180 |
| Cow position: | chr25:13787058-13787225 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 69, 38 |
| Conread position: | 12-181 |
| Cow position: | chr25:17657704-17657871 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 69, 38 |
| Conread position: | 12-181 |
| Cow position: | chr25:34343823-34343656 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 71, 38 |
| Conread position: | 12-181 |
| Cow position: | chr25:35755159-35754993 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 127 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 76, 38 |
| Conread position: | 12-181 |
| Cow position: | chr25:41121088-41121256 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 72, 38 |
| Conread position: | 12-182 |
| Cow position: | chr25:9395493-9395661 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 69, 38 |
| Conread position: | 12-182 |
| Cow position: | chr25:12939123-12938954 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 76, 38 |
| Conread position: | 12-182 |
| Cow position: | chr25:25826537-25826703 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 76, 18 |
| Conread position: | 12-182 |
| Cow position: | chr25:26282109-26282277 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 69, 16 |
| Conread position: | 12-182 |
| Cow position: | chr25:26353700-26353532 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 76, 38 |
| Conread position: | 12-189 |
| Cow position: | chr25:34013670-34013494 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 69, 38 |
| Conread position: | 12-191 |
| Cow position: | chr25:16801524-16801702 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 131 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 72, 38 |
| Conread position: | 12-191 |
| Cow position: | chr25:18474282-18474460 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 72, 40 |
| Conread position: | 12-191 |
| Cow position: | chr25:22151189-22151367 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 69, 38 |
| Conread position: | 12-191 |
| Cow position: | chr25:24655090-24654912 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 69, 38 |
| Conread position: | 12-191 |
| Cow position: | chr25:25509973-25510151 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 131 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 19, 39 |
| Conread position: | 12-191 |
| Cow position: | chr25:28275584-28275406 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 69, 38 |
| Conread position: | 12-191 |
| Cow position: | chr25:28862956-28863134 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 69, 40 |
| Conread position: | 12-192 |
| Cow position: | chr25:18486543-18486722 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 69, 38 |
| Conread position: | 12-192 |
| Cow position: | chr25:34503138-34502959 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 69, 38 |
| Conread position: | 12-192 |
| Cow position: | chr25:41356714-41356534 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 11, 41 |
| Conread position: | 12-204 |
| Cow position: | chr25:17562124-17562313 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 72, 38 |
| Conread position: | 13-182 |
| Cow position: | chr25:18265272-18265441 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 75, 37 |
| Conread position: | 17-178 |
| Cow position: | chr25:23999100-23998941 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 63, 33 |
| Conread position: | 17-179 |
| Cow position: | chr25:16922701-16922541 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 64, 33 |
| Conread position: | 17-180 |
| Cow position: | chr25:10012973-10012811 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 66, 33 |
| Conread position: | 17-181 |
| Cow position: | chr25:32577573-32577410 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 64, 33 |
| Conread position: | 17-182 |
| Cow position: | chr25:23361575-23361738 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 71, 33 |
| Conread position: | 17-182 |
| Cow position: | chr25:23366751-23366920 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 135 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 64, 35 |
| Conread position: | 17-182 |
| Cow position: | chr25:24205041-24204881 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 93, 33 |
| Conread position: | 17-182 |
| Cow position: | chr25:24228249-24228086 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 67, 33 |
| Conread position: | 17-191 |
| Cow position: | chr25:20075565-20075738 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 67, 33 |
| Conread position: | 17-191 |
| Cow position: | chr25:24637051-24636881 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 94, 35 |
| Conread position: | 17-192 |
| Cow position: | chr25:9413436-9413610 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 64, 33 |
| Conread position: | 17-192 |
| Cow position: | chr25:17211045-17210871 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 64, 33 |
| Conread position: | 17-192 |
| Cow position: | chr25:18190287-18190115 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 71, 33 |
| Conread position: | 17-192 |
| Cow position: | chr25:19139483-19139309 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 64, 33 |
| Conread position: | 17-618 |
| Cow position: | chr25:12756331-12755715 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 35 |
| Conread position: | 18-192 |
| Cow position: | chr25:40322200-40322029 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 63, 32 |
| Conread position: | 21-181 |
| Cow position: | chr25:39386736-39386577 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 60, 29 |
| Conread position: | 26-190 |
| Cow position: | chr25:16309108-16308951 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 58, 24 |
| Conread position: | 57-192 |
| Cow position: | chr25:20006273-20006412 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 15, 131 |
| Conread position: | 59-179 |
| Cow position: | chr25:9957646-9957525 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 59-191 |
| Cow position: | chr25:20495670-20495805 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 23, 128 |
| Conread position: | 213-785 |
| Cow position: | chr25:18448163-18448736 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 313, 23 |
| Conread position: | 214-734 |
| Cow position: | chr25:25826776-25827293 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 247, 73 |
| Conread position: | 214-735 |
| Cow position: | chr25:20075795-20076329 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 255 |
| Conread position: | 214-737 |
| Cow position: | chr25:11584833-11585352 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 64 |
| Conread position: | 214-777 |
| Cow position: | chr25:20495859-20496422 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 70 |
| Conread position: | 337-735 |
| Cow position: | chr25:25754556-25754165 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 171 |
| Conread position: | 398-735 |
| Cow position: | chr25:32899308-32898972 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 240 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 59, 16 |
| Conread position: | 422-777 |
| Cow position: | chr25:12824503-12824135 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 61 |
| Conread position: | 428-783 |
| Cow position: | chr25:8576224-8576587 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 260 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 22, 168 |
| Conread position: | 438-774 |
| Cow position: | chr25:14225260-14224919 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 240, 177 |
| Conread position: | 475-781 |
| Cow position: | chr25:18564071-18564379 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 97, 50 |
| Conread position: | 507-735 |
| Cow position: | chr25:33687292-33687064 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 179, 12 |
| Conread position: | 527-735 |
| Cow position: | chr25:12239510-12239316 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 8, 0 |
Show alignments to all cow chromosomes.