Cow genome map

Conread name: Pig4-TMW8019J06

Conread position: 1-196
Cow position: chr5:41229541-41229726 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 148
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 8, 0

Conread position: 10-174
Cow position: chr5:39442128-39442292 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 131
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 31, 72

Conread position: 10-178
Cow position: chr5:66281246-66281408 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 122
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 79, 0

Conread position: 10-180
Cow position: chr5:34232581-34232746 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 126
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 143, 74

Conread position: 10-181
Cow position: chr5:73526212-73526385 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 136
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 30, 10

Conread position: 10-195
Cow position: chr5:6504045-6503864 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 134
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 169, 74

Conread position: 10-196
Cow position: chr5:68481058-68481258 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 146
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 68, 0

Conread position: 10-202
Cow position: chr5:41604447-41604652 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 150
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 19, 0

Conread position: 10-203
Cow position: chr5:68082132-68081949 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 138
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 166, 80

Conread position: 10-204
Cow position: chr5:29504944-29505138 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 144
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 46, 88

Conread position: 10-204
Cow position: chr5:52000053-52000249 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 138
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 33, 102

Conread position: 10-589
Cow position: chr5:62027112-62026538 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 133
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 101, 45

Conread position: 11-161
Cow position: chr5:56753561-56753713 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 113
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 36, 0

Conread position: 11-163
Cow position: chr5:43329857-43329706 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 118
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 17, 40

Conread position: 11-173
Cow position: chr5:69773407-69773564 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 120
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 50, 0

Conread position: 11-185
Cow position: chr5:6986994-6987174 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 136
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 32, 83

Conread position: 11-186
Cow position: chr5:36486321-36486504 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 133
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 31, 0

Conread position: 11-191
Cow position: chr5:70582061-70581880 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 140
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 79, 16

Conread position: 11-192
Cow position: chr5:61488277-61488092 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 139
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 32, 0

Conread position: 11-196
Cow position: chr5:27007731-27007918 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 138
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 29, 86

Conread position: 11-204
Cow position: chr5:14153979-14154178 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 148
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 25, 0

Conread position: 11-204
Cow position: chr5:23366934-23366737 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 144
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 23, 115

Conread position: 12-183
Cow position: chr5:30332780-30332953 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 130
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 84, 38

Conread position: 12-190
Cow position: chr5:39710673-39710857 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 144
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 29, 116

Conread position: 12-192
Cow position: chr5:22934620-22934435 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 144
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 24, 111

Conread position: 18-175
Cow position: chr5:33265604-33265458 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 124
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 21, 0

Conread position: 20-196
Cow position: chr5:22839631-22839451 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 143
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 23, 67

Conread position: 20-196
Cow position: chr5:37714057-37713876 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 148
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 22, 0

Conread position: 20-196
Cow position: chr5:53146038-53145865 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 128
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 65, 80

Conread position: 21-160
Cow position: chr5:23179925-23180056 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 109
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 35, 0

Conread position: 21-171
Cow position: chr5:46294821-46294668 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 118
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 15, 71

Conread position: 21-173
Cow position: chr5:19905432-19905270 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 121
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 5, 0

Conread position: 21-175
Cow position: chr5:3058525-3058674 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 120
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 8, 0

Conread position: 21-177
Cow position: chr5:10248541-10248700 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 122
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 19, 80

Conread position: 21-177
Cow position: chr5:59356832-59356994 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 126
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 22, 0

Conread position: 21-179
Cow position: chr5:26595259-26595103 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 118
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 42, 73

Conread position: 21-180
Cow position: chr5:34184065-34184234 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 127
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 22, 0

Conread position: 21-181
Cow position: chr5:32956250-32956090 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 116
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 152, 88

Conread position: 21-182
Cow position: chr5:34921989-34921832 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 128
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 20, 90

Conread position: 21-186
Cow position: chr5:6896281-6896115 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 128
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 22, 53

Conread position: 21-186
Cow position: chr5:16214533-16214695 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 121
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 159, 49

Conread position: 21-186
Cow position: chr5:62638751-62638920 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 125
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 15, 90

Conread position: 21-188
Cow position: chr5:64398852-64399023 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 137
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 22, 154

Conread position: 21-189
Cow position: chr5:1344013-1343840 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 136
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 18, 0

Conread position: 21-192
Cow position: chr5:3752711-3752873 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 129
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 155, 41

Conread position: 21-196
Cow position: chr5:20974598-20974427 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 139
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 100, 34

Conread position: 21-197
Cow position: chr5:1276630-1276443 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 146
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 22, 0

Conread position: 21-198
Cow position: chr5:32282176-32282357 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 134
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 20, 165

Conread position: 21-203
Cow position: chr5:7552573-7552391 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 131
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 21-204
Cow position: chr5:27615361-27615544 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 141
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 152, 28

Conread position: 21-204
Cow position: chr5:48143945-48143757 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 143
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 13, 179

Conread position: 21-214
Cow position: chr5:56385071-56385268 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 151
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 20, 145

Conread position: 21-216
Cow position: chr5:504064-503872 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 142
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 138, 50

Conread position: 22-163
Cow position: chr5:14538810-14538671 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 113
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 23, 0

Conread position: 22-196
Cow position: chr5:1950215-1950042 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 126
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 156, 67

Conread position: 23-165
Cow position: chr5:35449101-35449236 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 111
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 69, 0

Conread position: 23-172
Cow position: chr5:26046181-26046331 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 111
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 24, 0

Conread position: 23-180
Cow position: chr5:8994718-8994562 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 117
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 154, 68

Conread position: 23-192
Cow position: chr5:35209629-35209461 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 130
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 28, 75

Conread position: 23-194
Cow position: chr5:17644808-17644638 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 128
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 84, 67

Conread position: 23-195
Cow position: chr5:30253589-30253758 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 124
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 87, 68

Conread position: 23-195
Cow position: chr5:32140860-32140691 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 123
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 85, 0

Conread position: 23-195
Cow position: chr5:40039923-40039751 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 127
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 20, 42

Conread position: 23-204
Cow position: chr5:12709733-12709915 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 132
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 54, 147

Conread position: 23-206
Cow position: chr5:56820414-56820231 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 128
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 147, 85

Conread position: 23-217
Cow position: chr5:45225977-45225786 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 144
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 84, 67

Conread position: 24-174
Cow position: chr5:65933083-65932930 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 119
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 25, 74

Conread position: 24-181
Cow position: chr5:33467192-33467039 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 125
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 25, 0

Conread position: 24-186
Cow position: chr5:58748611-58748779 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 123
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 10, 0

Conread position: 25-172
Cow position: chr5:65752706-65752853 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 106
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 25-202
Cow position: chr5:61840036-61840220 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 136
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 74, 132

Conread position: 25-204
Cow position: chr5:28224302-28224479 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 131
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 82, 65

Conread position: 26-176
Cow position: chr5:28946207-28946062 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 113
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 25, 0

Conread position: 26-203
Cow position: chr5:17027945-17028120 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 134
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 36, 66

Conread position: 29-204
Cow position: chr5:45940758-45940583 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 138
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 148, 78

Conread position: 31-194
Cow position: chr5:41636726-41636888 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 135
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 102, 0

Conread position: 33-155
Cow position: chr5:21195477-21195356 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 99
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 39, 0

Conread position: 33-199
Cow position: chr5:3442314-3442486 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 128
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 39, 127

Conread position: 34-176
Cow position: chr5:39182052-39181911 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 118
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 95, 0

Conread position: 34-212
Cow position: chr5:7921541-7921363 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 130
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 146, 74

Conread position: 34-221
Cow position: chr5:4630983-4631166 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 136
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 135, 9

Conread position: 35-188
Cow position: chr5:38629149-38629301 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 121
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 140, 94

Conread position: 35-196
Cow position: chr5:3649598-3649439 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 126
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 77, 127

Conread position: 35-196
Cow position: chr5:55989603-55989763 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 123
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 55, 135

Conread position: 35-196
Cow position: chr5:65924836-65924671 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 121
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 73, 0

Conread position: 35-204
Cow position: chr5:73556326-73556165 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 127
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 37, 0

Conread position: 38-177
Cow position: chr5:42795011-42794880 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 113
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 71, 0

Conread position: 40-195
Cow position: chr5:29560276-29560423 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 120
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 91, 0

Conread position: 45-204
Cow position: chr5:31561402-31561563 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 124
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 35, 0

Conread position: 45-204
Cow position: chr5:63188454-63188296 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 117
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 124, 28

Conread position: 50-192
Cow position: chr5:36407033-36407172 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 112
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 119, 0

Conread position: 63-196
Cow position: chr5:4927679-4927546 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 102
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 105, 117

Conread position: 68-197
Cow position: chr5:13044501-13044372 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 103
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 87-204
Cow position: chr5:17267983-17267865 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 93
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 86, 0

Show alignments to all cow chromosomes.