Cow genome map

Conread name: Pig4-TMW8019L08

Conread position: 1-180
Cow position: chr16:5243766-5243948 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 145
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 38, 9

Conread position: 2-179
Cow position: chr16:50014325-50014506 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 134
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 41, 122

Conread position: 3-204
Cow position: chr16:27005005-27005204 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 157
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 33, 7

Conread position: 8-204
Cow position: chr16:41608416-41608616 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 147
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 35, 0

Conread position: 10-179
Cow position: chr16:55586791-55586622 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 128
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 10-204
Cow position: chr16:37452809-37452613 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 136
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 97, 80

Conread position: 11-155
Cow position: chr16:32385010-32384868 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 117
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 72, 0

Conread position: 11-177
Cow position: chr16:19976778-19976951 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 127
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 23, 75

Conread position: 11-182
Cow position: chr16:36930510-36930336 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 131
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 125, 0

Conread position: 11-189
Cow position: chr16:16545882-16546061 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 133
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 86, 50

Conread position: 11-191
Cow position: chr16:25463583-25463766 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 142
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 71, 0

Conread position: 11-204
Cow position: chr16:31419254-31419448 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 145
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 119, 61

Conread position: 12-166
Cow position: chr16:28267205-28267048 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 45, 101

Conread position: 12-197
Cow position: chr16:13683958-13683764 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 150
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 98, 11

Conread position: 16-177
Cow position: chr16:20685623-20685472 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 122
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 66, 27

Conread position: 17-192
Cow position: chr16:30639163-30639327 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 135
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 158, 75

Conread position: 17-204
Cow position: chr16:17948364-17948182 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 136
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 13, 0

Conread position: 20-194
Cow position: chr16:5836401-5836570 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 127
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 25, 85

Conread position: 21-133
Cow position: chr16:49171590-49171480 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 90
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 28, 0

Conread position: 21-164
Cow position: chr16:40732038-40732180 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 120
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 98, 0

Conread position: 21-168
Cow position: chr16:37062575-37062426 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 114
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 130, 90

Conread position: 21-170
Cow position: chr16:7427043-7426890 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 117
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 100, 28

Conread position: 21-177
Cow position: chr16:43815733-43815885 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 124
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 22, 50

Conread position: 21-179
Cow position: chr16:18051910-18052074 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 121
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 22, 0

Conread position: 21-182
Cow position: chr16:4499255-4499415 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 129
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 154, 0

Conread position: 21-186
Cow position: chr16:26156315-26156153 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 132
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 60, 0

Conread position: 21-186
Cow position: chr16:34210593-34210423 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 128
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 35, 0

Conread position: 21-191
Cow position: chr16:44973315-44973483 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 124
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 56, 88

Conread position: 21-195
Cow position: chr16:2308505-2308681 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 132
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 39, 28

Conread position: 21-195
Cow position: chr16:25803585-25803409 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 139
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 32, 103

Conread position: 21-196
Cow position: chr16:45692961-45693142 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 138
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 20, 0

Conread position: 21-200
Cow position: chr16:18949422-18949611 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 137
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 116, 25

Conread position: 21-200
Cow position: chr16:25287871-25287686 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 135
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 22, 92

Conread position: 21-204
Cow position: chr16:28112101-28111919 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 139
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 68, 166

Conread position: 21-204
Cow position: chr16:48493003-48493181 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 129
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 14, 0

Conread position: 21-205
Cow position: chr16:3628636-3628816 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 136
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 78, 15

Conread position: 21-218
Cow position: chr16:17867653-17867452 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 139
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 143, 177

Conread position: 21-283
Cow position: chr16:20260308-20260570 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 186
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 21, 92

Conread position: 22-192
Cow position: chr16:8236497-8236332 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 126
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 67, 0

Conread position: 22-195
Cow position: chr16:27013723-27013888 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 129
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 154, 33

Conread position: 22-196
Cow position: chr16:12169870-12169695 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 132
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 154, 145

Conread position: 22-196
Cow position: chr16:41697270-41697091 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 135
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 19, 54

Conread position: 22-196
Cow position: chr16:53267549-53267719 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 136
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 154, 17

Conread position: 23-171
Cow position: chr16:14685567-14685419 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 117
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 84, 69

Conread position: 23-176
Cow position: chr16:11775228-11775073 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 116
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 84, 72

Conread position: 23-179
Cow position: chr16:7784961-7785120 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 118
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 22, 151

Conread position: 23-181
Cow position: chr16:9845891-9845729 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 126
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 22, 149

Conread position: 23-181
Cow position: chr16:17626752-17626908 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 117
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 64, 86

Conread position: 23-181
Cow position: chr16:45677030-45676870 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 117
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 148, 85

Conread position: 23-182
Cow position: chr16:4144886-4145045 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 123
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 71, 86

Conread position: 23-187
Cow position: chr16:11153367-11153204 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 125
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 153, 17

Conread position: 23-192
Cow position: chr16:18427006-18427177 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 131
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 39, 0

Conread position: 23-193
Cow position: chr16:17745657-17745826 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 127
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 86, 58

Conread position: 23-193
Cow position: chr16:53037801-53037635 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 129
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 87, 61

Conread position: 23-195
Cow position: chr16:4910709-4910533 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 128
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 75, 0

Conread position: 23-195
Cow position: chr16:17288763-17288939 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 127
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 65, 151

Conread position: 23-196
Cow position: chr16:20634056-20633883 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 122
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 155, 86

Conread position: 23-197
Cow position: chr16:14754500-14754325 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 130
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 155, 85

Conread position: 23-197
Cow position: chr16:52218911-52219077 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 126
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 20, 0

Conread position: 23-202
Cow position: chr16:17142754-17142941 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 136
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 20, 71

Conread position: 23-202
Cow position: chr16:51399924-51399744 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 126
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 43, 72

Conread position: 23-204
Cow position: chr16:49169561-49169380 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 132
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 157, 15

Conread position: 23-213
Cow position: chr16:32837724-32837533 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 152
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 121, 12

Conread position: 24-169
Cow position: chr16:30939556-30939702 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 108
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 64, 0

Conread position: 24-214
Cow position: chr16:16265280-16265091 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 144
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 19, 68

Conread position: 25-167
Cow position: chr16:28816270-28816129 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 115
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 94, 0

Conread position: 25-173
Cow position: chr16:3918357-3918503 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 117
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 5, 0

Conread position: 25-197
Cow position: chr16:43275846-43276016 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 124
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 83, 0

Conread position: 25-204
Cow position: chr16:10303923-10303744 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 137
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 151, 5

Conread position: 26-186
Cow position: chr16:23990662-23990497 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 125
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 17, 0

Conread position: 28-189
Cow position: chr16:49579910-49580068 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 127
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 83, 61

Conread position: 30-204
Cow position: chr16:23025174-23025348 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 123
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 146, 130

Conread position: 32-196
Cow position: chr16:4979642-4979795 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 125
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 145, 23

Conread position: 33-176
Cow position: chr16:54515556-54515699 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 105
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 34-177
Cow position: chr16:4875827-4875970 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 121
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 34-196
Cow position: chr16:23738012-23738174 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 119
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 54, 77

Conread position: 34-206
Cow position: chr16:4762967-4763138 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 137
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 146, 38

Conread position: 35-178
Cow position: chr16:38620796-38620934 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 110
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 49, 0

Conread position: 35-180
Cow position: chr16:3821371-3821517 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 114
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 72, 49

Conread position: 35-194
Cow position: chr16:51994839-51994995 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 124
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 77, 54

Conread position: 35-196
Cow position: chr16:43765143-43765296 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 119
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 99, 0

Conread position: 35-196
Cow position: chr16:51070091-51069923 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 126
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 55, 0

Conread position: 35-204
Cow position: chr16:8323148-8322981 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 120
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 74, 0

Conread position: 35-205
Cow position: chr16:5363730-5363902 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 130
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 72, 49

Conread position: 39-181
Cow position: chr16:10592273-10592412 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 110
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 69, 0

Conread position: 39-183
Cow position: chr16:46253853-46253706 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 111
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 18, 0

Conread position: 41-192
Cow position: chr16:22872527-22872378 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 122
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 125, 51

Conread position: 43-174
Cow position: chr16:16524515-16524386 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 100
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 67, 0

Conread position: 49-185
Cow position: chr16:52222480-52222343 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 110
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 127, 0

Conread position: 50-198
Cow position: chr16:46680681-46680829 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 113
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 121, 16

Conread position: 52-186
Cow position: chr16:31489933-31490067 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 107
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 68, 128

Conread position: 55-205
Cow position: chr16:51880132-51879982 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 118
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 110, 133

Conread position: 69-204
Cow position: chr16:12072508-12072643 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 101
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.