Cow genome map
| Conread name: | Pig4-TMW8019L08 |
| Conread position: | 8-189 |
| Cow position: | chr21:35997044-35997225 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 147 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-192 |
| Cow position: | chr21:44754906-44754724 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 35, 88 |
| Conread position: | 10-177 |
| Cow position: | chr21:5597019-5597189 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 33, 91 |
| Conread position: | 10-188 |
| Cow position: | chr21:29942879-29943053 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 158, 79 |
| Conread position: | 10-204 |
| Cow position: | chr21:24698363-24698545 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 163, 51 |
| Conread position: | 11-196 |
| Cow position: | chr21:30150392-30150208 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 77, 108 |
| Conread position: | 11-204 |
| Cow position: | chr21:9353314-9353511 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 31, 85 |
| Conread position: | 11-205 |
| Cow position: | chr21:35061962-35062152 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 32, 88 |
| Conread position: | 16-197 |
| Cow position: | chr21:42459660-42459479 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 161, 91 |
| Conread position: | 17-196 |
| Cow position: | chr21:34565329-34565153 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 159, 79 |
| Conread position: | 18-192 |
| Cow position: | chr21:15742215-15742036 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 76, 29 |
| Conread position: | 20-180 |
| Cow position: | chr21:45923765-45923605 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 23, 74 |
| Conread position: | 21-155 |
| Cow position: | chr21:24714536-24714674 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 21-165 |
| Cow position: | chr21:23478836-23478690 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 21-169 |
| Cow position: | chr21:36819333-36819181 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 21-170 |
| Cow position: | chr21:42053381-42053233 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 69, 40 |
| Conread position: | 21-179 |
| Cow position: | chr21:12973369-12973205 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 21-181 |
| Cow position: | chr21:47823388-47823230 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 26, 46 |
| Conread position: | 21-186 |
| Cow position: | chr21:5425863-5426021 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 21-187 |
| Cow position: | chr21:8932002-8931841 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 121 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 127, 71 |
| Conread position: | 21-189 |
| Cow position: | chr21:31662344-31662515 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 22, 123 |
| Conread position: | 21-192 |
| Cow position: | chr21:11676159-11675997 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 159, 15 |
| Conread position: | 21-192 |
| Cow position: | chr21:25286393-25286569 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 30, 146 |
| Conread position: | 21-192 |
| Cow position: | chr21:28993742-28993564 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 139 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 32, 90 |
| Conread position: | 21-195 |
| Cow position: | chr21:3813599-3813428 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 21-195 |
| Cow position: | chr21:36163079-36162904 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 86, 63 |
| Conread position: | 21-196 |
| Cow position: | chr21:2412644-2412819 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 38, 64 |
| Conread position: | 21-196 |
| Cow position: | chr21:6316089-6316274 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 21-199 |
| Cow position: | chr21:34739730-34739906 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 89, 66 |
| Conread position: | 21-202 |
| Cow position: | chr21:23449458-23449637 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 34, 42 |
| Conread position: | 21-204 |
| Cow position: | chr21:4568169-4568349 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 21-204 |
| Cow position: | chr21:49662234-49662057 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 148, 68 |
| Conread position: | 22-175 |
| Cow position: | chr21:18782150-18782303 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 91, 13 |
| Conread position: | 23-167 |
| Cow position: | chr21:28512418-28512556 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 23-176 |
| Cow position: | chr21:42135738-42135582 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 20, 69 |
| Conread position: | 23-182 |
| Cow position: | chr21:12801861-12801707 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 118 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 146, 74 |
| Conread position: | 23-182 |
| Cow position: | chr21:29069443-29069285 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 23-182 |
| Cow position: | chr21:43357378-43357216 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 20, 72 |
| Conread position: | 23-193 |
| Cow position: | chr21:28944478-28944310 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 153, 72 |
| Conread position: | 23-194 |
| Cow position: | chr21:8289755-8289576 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 20, 136 |
| Conread position: | 23-194 |
| Cow position: | chr21:14452122-14452288 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 23-195 |
| Cow position: | chr21:12462085-12461912 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 7, 86 |
| Conread position: | 23-195 |
| Cow position: | chr21:13840207-13840382 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 33, 70 |
| Conread position: | 23-195 |
| Cow position: | chr21:27229909-27229736 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 40, 100 |
| Conread position: | 23-195 |
| Cow position: | chr21:28734026-28733857 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 123 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 65, 77 |
| Conread position: | 23-196 |
| Cow position: | chr21:32574604-32574777 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 88, 122 |
| Conread position: | 23-196 |
| Cow position: | chr21:39401480-39401651 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 165, 85 |
| Conread position: | 23-214 |
| Cow position: | chr21:33210084-33210279 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 20, 89 |
| Conread position: | 23-608 |
| Cow position: | chr21:41595596-41596184 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 18, 144 |
| Conread position: | 24-176 |
| Cow position: | chr21:41583157-41583309 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 65, 140 |
| Conread position: | 24-195 |
| Cow position: | chr21:912080-911911 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 25-195 |
| Cow position: | chr21:957560-957728 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 27-194 |
| Cow position: | chr21:44093669-44093839 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 18, 57 |
| Conread position: | 34-169 |
| Cow position: | chr21:8206669-8206799 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 34-182 |
| Cow position: | chr21:33997329-33997185 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 35-183 |
| Cow position: | chr21:23586778-23586924 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 108 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 35-192 |
| Cow position: | chr21:28998004-28997845 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 35-195 |
| Cow position: | chr21:13089571-13089413 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 35-204 |
| Cow position: | chr21:20418787-20418618 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 119 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 53, 74 |
| Conread position: | 37-218 |
| Cow position: | chr21:31200073-31200258 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 81, 156 |
| Conread position: | 38-186 |
| Cow position: | chr21:8187609-8187457 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 38-194 |
| Cow position: | chr21:41155764-41155919 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 152, 70 |
| Conread position: | 39-195 |
| Cow position: | chr21:18041946-18041792 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 112 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 39-196 |
| Cow position: | chr21:41514706-41514865 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 113, 44 |
| Conread position: | 39-221 |
| Cow position: | chr21:11521145-11520965 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 125, 70 |
| Conread position: | 43-185 |
| Cow position: | chr21:25800302-25800444 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 132, 13 |
| Conread position: | 64-182 |
| Cow position: | chr21:37848163-37848283 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 78-188 |
| Cow position: | chr21:24703618-24703727 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 91 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 97, 31 |
| Conread position: | 78-204 |
| Cow position: | chr21:23397904-23397782 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 14, 0 |
Show alignments to all cow chromosomes.