Cow genome map

Conread name: Pig4-TMW8022I05

Conread position: 35-502
Cow position: chr12:40867988-40868438 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 306, 9

Conread position: 35-577
Cow position: chr12:26869383-26868873 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 14

Conread position: 35-638
Cow position: chr12:24440215-24440794 (view UCSC Genome Browser custom track)
Alignm length: 609
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 306, 9

Conread position: 44-736
Cow position: chr12:15938837-15938186 (view UCSC Genome Browser custom track)
Alignm length: 706
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 416, 49

Conread position: 44-787
Cow position: chr12:21828478-21829206 (view UCSC Genome Browser custom track)
Alignm length: 750
Alignm identity: 505
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 236

Conread position: 45-647
Cow position: chr12:18421512-18420934 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 296, 57

Conread position: 45-799
Cow position: chr12:31430154-31429426 (view UCSC Genome Browser custom track)
Alignm length: 768
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 204, 91

Conread position: 45-805
Cow position: chr12:25606103-25606860 (view UCSC Genome Browser custom track)
Alignm length: 776
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 406, 91

Conread position: 51-736
Cow position: chr12:11835659-11836318 (view UCSC Genome Browser custom track)
Alignm length: 694
Alignm identity: 464
Alignm E-value: 0
Alignm gaps (pig, cow): 614, 106

Conread position: 155-501
Cow position: chr12:36896146-36895805 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 234
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 96, 10

Conread position: 156-587
Cow position: chr12:19871957-19872358 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 338, 9

Conread position: 159-661
Cow position: chr12:41596304-41596821 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 332
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 26, 122

Conread position: 159-737
Cow position: chr12:3211835-3212405 (view UCSC Genome Browser custom track)
Alignm length: 593
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 74

Conread position: 160-788
Cow position: chr12:16544065-16543442 (view UCSC Genome Browser custom track)
Alignm length: 654
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 7

Conread position: 185-704
Cow position: chr12:47800273-47799771 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 461, 90

Conread position: 213-533
Cow position: chr12:13965204-13964889 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 228
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 128, 29

Conread position: 214-810
Cow position: chr12:25312809-25312221 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 61

Conread position: 220-502
Cow position: chr12:26949743-26949465 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 196
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 121, 55

Conread position: 221-647
Cow position: chr12:35707355-35706942 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 55

Conread position: 222-787
Cow position: chr12:24558914-24559494 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 55

Conread position: 228-604
Cow position: chr12:35807266-35807628 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 47

Conread position: 228-647
Cow position: chr12:10838391-10838799 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 20

Conread position: 228-656
Cow position: chr12:5632292-5631882 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 283
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 113, 47

Conread position: 228-788
Cow position: chr12:1223747-1223212 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 47

Conread position: 245-788
Cow position: chr12:30596065-30596605 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 418, 30

Conread position: 246-801
Cow position: chr12:30753326-30753865 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 29

Conread position: 272-598
Cow position: chr12:39753490-39753811 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 237
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 150, 36

Conread position: 272-613
Cow position: chr12:32987322-32987650 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 43

Conread position: 273-798
Cow position: chr12:47803781-47804300 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 106

Conread position: 290-590
Cow position: chr12:41979656-41979364 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 102

Conread position: 292-737
Cow position: chr12:33323853-33323420 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 87

Conread position: 293-767
Cow position: chr12:27039117-27038627 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 230, 47

Conread position: 305-650
Cow position: chr12:16851350-16851015 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 54

Conread position: 320-635
Cow position: chr12:32399868-32400178 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 228
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 22, 67

Conread position: 327-499
Cow position: chr12:7055605-7055441 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 139
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 14, 37

Conread position: 335-799
Cow position: chr12:33457839-33458287 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 254, 18

Conread position: 335-801
Cow position: chr12:3757348-3756903 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 106

Conread position: 338-799
Cow position: chr12:23983361-23983811 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 317
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 116, 5

Conread position: 339-570
Cow position: chr12:3076930-3076702 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 158
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 52, 0

Conread position: 339-749
Cow position: chr12:31198461-31198865 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 46

Conread position: 340-647
Cow position: chr12:27563141-27562840 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 208
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 181, 16

Conread position: 340-801
Cow position: chr12:18769382-18768923 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 43

Conread position: 340-803
Cow position: chr12:25619683-25619227 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 39

Conread position: 341-645
Cow position: chr12:12939235-12938934 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 37

Conread position: 341-725
Cow position: chr12:30688033-30688407 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 0

Conread position: 341-785
Cow position: chr12:35354470-35354893 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 311
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 38, 87

Conread position: 345-577
Cow position: chr12:15622757-15622525 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 181
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 92, 40

Conread position: 350-588
Cow position: chr12:18081839-18081618 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 174
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 35, 0

Conread position: 350-664
Cow position: chr12:41091233-41091538 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 218
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 249, 41

Conread position: 351-780
Cow position: chr12:245985-245587 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 302
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 175, 34

Conread position: 351-790
Cow position: chr12:5797839-5797431 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 311, 34

Conread position: 353-781
Cow position: chr12:5899234-5899637 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 32

Conread position: 358-790
Cow position: chr12:1504739-1505154 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 292
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 313, 20

Conread position: 361-611
Cow position: chr12:18417278-18417524 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 25

Conread position: 372-637
Cow position: chr12:34089555-34089822 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 192
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 19, 159

Conread position: 379-714
Cow position: chr12:28559025-28559357 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 125

Conread position: 382-725
Cow position: chr12:5635715-5635379 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 248
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 9, 87

Conread position: 385-707
Cow position: chr12:38484663-38484338 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 37

Conread position: 394-790
Cow position: chr12:30064690-30065071 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 277, 65

Conread position: 395-576
Cow position: chr12:42283090-42282913 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 133
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 132, 44

Conread position: 403-705
Cow position: chr12:8595645-8595954 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 213
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 141, 41

Conread position: 406-668
Cow position: chr12:40028997-40028745 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 177
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 50, 0

Conread position: 409-791
Cow position: chr12:41642196-41642571 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 242, 41

Conread position: 418-589
Cow position: chr12:21862014-21861852 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 131
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 34, 0

Conread position: 420-725
Cow position: chr12:27495778-27496075 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 212
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 10, 0

Conread position: 423-628
Cow position: chr12:6117675-6117875 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 160
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 188, 33

Conread position: 423-797
Cow position: chr12:48425496-48425855 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 261
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 231, 79

Conread position: 425-785
Cow position: chr12:32413284-32413650 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 265
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 130, 81

Conread position: 426-650
Cow position: chr12:37394483-37394715 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 169
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 97, 28

Conread position: 426-800
Cow position: chr12:1030758-1031131 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 254
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 244, 63

Conread position: 437-599
Cow position: chr12:11696464-11696623 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 119
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 67, 0

Conread position: 496-763
Cow position: chr12:14325425-14325161 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 198
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 87, 35

Conread position: 499-800
Cow position: chr12:17110045-17109748 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 208
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 135, 27

Conread position: 508-800
Cow position: chr12:45226133-45225841 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 200
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 157, 32

Conread position: 531-800
Cow position: chr12:29691324-29691048 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 193
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 63, 19

Conread position: 543-759
Cow position: chr12:24204423-24204205 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 154
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 21, 71

Conread position: 550-772
Cow position: chr12:31528957-31528735 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 162
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 120, 49

Conread position: 561-796
Cow position: chr12:40716136-40715904 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 172
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 102, 16

Conread position: 563-800
Cow position: chr12:4582851-4583090 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 172
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 108, 43

Conread position: 565-791
Cow position: chr12:5658840-5658607 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 173
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 76, 0

Conread position: 566-811
Cow position: chr12:5680590-5680841 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 175
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 36, 29

Conread position: 574-800
Cow position: chr12:18966837-18966607 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 168
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 97, 33

Conread position: 585-782
Cow position: chr12:31257950-31258137 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 145
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 20, 0

Conread position: 586-788
Cow position: chr12:17262783-17262988 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 148
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 85, 51

Conread position: 596-801
Cow position: chr12:18093831-18094039 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 151
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 75, 41

Conread position: 606-789
Cow position: chr12:5497874-5497692 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 134
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 61, 118

Conread position: 618-796
Cow position: chr12:14855773-14855957 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 144
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 6, 20

Conread position: 622-781
Cow position: chr12:25933648-25933812 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 126
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 50, 128

Conread position: 664-782
Cow position: chr12:28017058-28017176 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 95
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.