Cow genome map

Conread name: Pig4-TMW8022I05

Conread position: 28-567
Cow position: chr29:1613143-1612627 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 17

Conread position: 34-564
Cow position: chr29:13616215-13615692 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 252, 10

Conread position: 35-614
Cow position: chr29:5238158-5238713 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 306, 9

Conread position: 39-735
Cow position: chr29:649707-650394 (view UCSC Genome Browser custom track)
Alignm length: 711
Alignm identity: 517
Alignm E-value: 0
Alignm gaps (pig, cow): 302, 20

Conread position: 44-614
Cow position: chr29:8623554-8623013 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 0

Conread position: 44-634
Cow position: chr29:4480714-4480159 (view UCSC Genome Browser custom track)
Alignm length: 595
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 297, 92

Conread position: 44-647
Cow position: chr29:6935164-6935744 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 297, 94

Conread position: 44-712
Cow position: chr29:24952113-24952783 (view UCSC Genome Browser custom track)
Alignm length: 685
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 217

Conread position: 45-664
Cow position: chr29:2744821-2744226 (view UCSC Genome Browser custom track)
Alignm length: 623
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 296, 91

Conread position: 45-669
Cow position: chr29:21535242-21534626 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 96

Conread position: 45-767
Cow position: chr29:13553590-13554289 (view UCSC Genome Browser custom track)
Alignm length: 730
Alignm identity: 540
Alignm E-value: 0
Alignm gaps (pig, cow): 548, 96

Conread position: 45-797
Cow position: chr29:18072377-18073119 (view UCSC Genome Browser custom track)
Alignm length: 768
Alignm identity: 553
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 91

Conread position: 45-798
Cow position: chr29:34737025-34736305 (view UCSC Genome Browser custom track)
Alignm length: 769
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 246

Conread position: 55-748
Cow position: chr29:9911616-9912310 (view UCSC Genome Browser custom track)
Alignm length: 721
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 5

Conread position: 56-800
Cow position: chr29:35291568-35292290 (view UCSC Genome Browser custom track)
Alignm length: 770
Alignm identity: 514
Alignm E-value: 0
Alignm gaps (pig, cow): 246, 15

Conread position: 75-699
Cow position: chr29:12901622-12901034 (view UCSC Genome Browser custom track)
Alignm length: 625
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 0

Conread position: 85-603
Cow position: chr29:45650840-45650359 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 345
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 257, 51

Conread position: 101-502
Cow position: chr29:38910504-38910113 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 35

Conread position: 159-572
Cow position: chr29:16612402-16612005 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 116

Conread position: 159-655
Cow position: chr29:12005209-12004730 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 55

Conread position: 171-678
Cow position: chr29:17524-17050 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 55

Conread position: 184-804
Cow position: chr29:11072113-11071497 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 91

Conread position: 190-815
Cow position: chr29:18963324-18963932 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 456
Alignm E-value: 0
Alignm gaps (pig, cow): 429, 85

Conread position: 207-737
Cow position: chr29:34610111-34609615 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 16

Conread position: 209-647
Cow position: chr29:1307263-1306836 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 66

Conread position: 213-794
Cow position: chr29:12450989-12451541 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 63

Conread position: 220-788
Cow position: chr29:22895342-22895900 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 25

Conread position: 221-630
Cow position: chr29:603682-603311 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 288
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 54, 0

Conread position: 221-782
Cow position: chr29:4367349-4367890 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 443, 54

Conread position: 231-790
Cow position: chr29:26616114-26615547 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 44

Conread position: 234-739
Cow position: chr29:32655815-32655311 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 41

Conread position: 251-748
Cow position: chr29:19508589-19509079 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 24

Conread position: 275-790
Cow position: chr29:7408225-7407730 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 112

Conread position: 281-756
Cow position: chr29:19907031-19907494 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 389, 51

Conread position: 290-663
Cow position: chr29:13372346-13372703 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 253
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 322, 61

Conread position: 305-805
Cow position: chr29:2644613-2644112 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 299
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 31, 81

Conread position: 315-789
Cow position: chr29:37961267-37960804 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 39

Conread position: 332-803
Cow position: chr29:39111586-39111111 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 329
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 8, 60

Conread position: 336-577
Cow position: chr29:36404548-36404780 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 179
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 49, 0

Conread position: 336-790
Cow position: chr29:21265462-21265935 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 329
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 133, 42

Conread position: 338-800
Cow position: chr29:13634571-13634116 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 316, 47

Conread position: 341-624
Cow position: chr29:23743305-23743053 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 204
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 38, 0

Conread position: 341-739
Cow position: chr29:21924942-21925315 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 324, 37

Conread position: 341-797
Cow position: chr29:26129231-26129672 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 319, 38

Conread position: 342-647
Cow position: chr29:22069014-22068716 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 209
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 192, 49

Conread position: 346-801
Cow position: chr29:29302917-29302477 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 321, 39

Conread position: 351-632
Cow position: chr29:4194379-4194097 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 200
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 225, 40

Conread position: 352-800
Cow position: chr29:18021932-18021498 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 308
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 135, 33

Conread position: 353-586
Cow position: chr29:44135717-44135493 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 163
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 49, 33

Conread position: 353-790
Cow position: chr29:22162509-22162070 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 298
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 240, 112

Conread position: 353-799
Cow position: chr29:2275089-2274661 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 290
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 42, 13

Conread position: 354-800
Cow position: chr29:356071-356509 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 298, 37

Conread position: 355-612
Cow position: chr29:30545116-30544873 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 185
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 248, 81

Conread position: 358-798
Cow position: chr29:11787541-11787968 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 27

Conread position: 362-668
Cow position: chr29:3502309-3502616 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 215
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 61, 29

Conread position: 366-593
Cow position: chr29:7828714-7828488 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 165
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 153, 13

Conread position: 371-792
Cow position: chr29:39023579-39023161 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 86

Conread position: 372-595
Cow position: chr29:22714965-22714748 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 151
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 21, 0

Conread position: 382-664
Cow position: chr29:14484773-14484496 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 198
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 45, 13

Conread position: 386-583
Cow position: chr29:10475186-10475375 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 145
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 52, 71

Conread position: 391-663
Cow position: chr29:463874-463614 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 178
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 63, 0

Conread position: 394-748
Cow position: chr29:26985011-26985360 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 243
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 272, 17

Conread position: 395-661
Cow position: chr29:41006342-41006617 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 194
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 41, 121

Conread position: 401-728
Cow position: chr29:38580765-38581091 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 228
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 261, 84

Conread position: 402-519
Cow position: chr29:27290380-27290263 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 95
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 403-722
Cow position: chr29:10187851-10188166 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 238
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 201, 17

Conread position: 403-788
Cow position: chr29:709331-708958 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 277, 41

Conread position: 411-727
Cow position: chr29:11433922-11434231 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 217
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 255, 43

Conread position: 423-616
Cow position: chr29:7392906-7393096 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 148
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 23, 82

Conread position: 428-748
Cow position: chr29:25924155-25923829 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 227
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 159, 75

Conread position: 434-739
Cow position: chr29:16055316-16055008 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 70

Conread position: 437-790
Cow position: chr29:35442636-35442287 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 238
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 229, 17

Conread position: 442-736
Cow position: chr29:17296963-17297256 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 201
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 170, 5

Conread position: 444-798
Cow position: chr29:4085148-4085498 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 243
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 222, 60

Conread position: 445-797
Cow position: chr29:41082992-41083322 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 247
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 225, 12

Conread position: 451-775
Cow position: chr29:19821123-19821441 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 219
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 207, 57

Conread position: 456-725
Cow position: chr29:19897449-19897719 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 191
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 210, 24

Conread position: 459-797
Cow position: chr29:7663426-7663091 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 224
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 211, 47

Conread position: 479-782
Cow position: chr29:6771996-6772296 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 225
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 188, 27

Conread position: 479-797
Cow position: chr29:18540926-18541228 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 227
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 120, 24

Conread position: 491-779
Cow position: chr29:14758987-14758697 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 214
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 175, 13

Conread position: 496-782
Cow position: chr29:4444593-4444885 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 191
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 170, 21

Conread position: 499-756
Cow position: chr29:942508-942766 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 188
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 18, 29

Conread position: 499-803
Cow position: chr29:29559837-29559535 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 215
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 35, 14

Conread position: 501-800
Cow position: chr29:1340666-1340966 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 214
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 170, 25

Conread position: 506-788
Cow position: chr29:7054309-7054583 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 210
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 157, 27

Conread position: 509-697
Cow position: chr29:23233341-23233529 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 146
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 146, 18

Conread position: 517-749
Cow position: chr29:9938188-9937948 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 172
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 86, 188

Conread position: 534-766
Cow position: chr29:25426742-25426508 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 171
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 137, 47

Conread position: 535-802
Cow position: chr29:6207980-6208247 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 187
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 137, 71

Conread position: 538-790
Cow position: chr29:21186955-21186699 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 179
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 134, 60

Conread position: 542-790
Cow position: chr29:5616945-5616693 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 181
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 129, 10

Conread position: 545-790
Cow position: chr29:5976860-5976616 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 178
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 62, 50

Conread position: 593-789
Cow position: chr29:19734641-19734835 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 143
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 65, 44

Conread position: 643-791
Cow position: chr29:9662036-9662191 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 117
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 24, 0

Conread position: 643-803
Cow position: chr29:23742241-23742078 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 129
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 20, 55

Conread position: 665-802
Cow position: chr29:32080594-32080732 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 105
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 9, 128

Conread position: 671-799
Cow position: chr29:32520304-32520431 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 99
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 20, 0

Conread position: 674-790
Cow position: chr29:42686660-42686543 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 95
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 73, 0

Show alignments to all cow chromosomes.