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Cow genome map

           
Conread name:
           
Pig4-TMW8022I05
        

               
Conread position:
               
33-712
               

               
Cow position:
               
chr5:41392210-41392857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
686
               

               
Alignm identity:
               
440
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 47
               

               
Conread position:
               
33-782
               

               
Cow position:
               
chr5:3441914-3442638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
778
               

               
Alignm identity:
               
526
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
297, 11
               

               
Conread position:
               
34-647
               

               
Cow position:
               
chr5:47704669-47704074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
617
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
307, 10
               

               
Conread position:
               
35-502
               

               
Cow position:
               
chr5:3500640-3500180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
306, 9
               

               
Conread position:
               
35-577
               

               
Cow position:
               
chr5:33467579-33467057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
253, 38
               

               
Conread position:
               
35-646
               

               
Cow position:
               
chr5:411227-410640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
614
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
306, 9
               

               
Conread position:
               
35-654
               

               
Cow position:
               
chr5:360475-359880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
630
               

               
Alignm identity:
               
430
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 9
               

               
Conread position:
               
35-660
               

               
Cow position:
               
chr5:34709259-34709861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
628
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
306, 9
               

               
Conread position:
               
35-660
               

               
Cow position:
               
chr5:49522193-49522795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
627
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
306, 9
               

               
Conread position:
               
35-709
               

               
Cow position:
               
chr5:27154491-27155127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
680
               

               
Alignm identity:
               
449
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 8
               

               
Conread position:
               
35-714
               

               
Cow position:
               
chr5:72172494-72173144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
681
               

               
Alignm identity:
               
478
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
550, 17
               

               
Conread position:
               
37-645
               

               
Cow position:
               
chr5:67654781-67655386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
629
               

               
Alignm identity:
               
436
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 38
               

               
Conread position:
               
39-790
               

               
Cow position:
               
chr5:14313981-14314738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
775
               

               
Alignm identity:
               
520
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 173
               

               
Conread position:
               
44-502
               

               
Cow position:
               
chr5:48804970-48804504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 180
               

               
Conread position:
               
44-502
               

               
Cow position:
               
chr5:58770372-58769932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
297, 92
               

               
Conread position:
               
44-502
               

               
Cow position:
               
chr5:64778506-64778063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
297, 92
               

               
Conread position:
               
44-605
               

               
Cow position:
               
chr5:30816188-30816731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 100
               

               
Conread position:
               
44-662
               

               
Cow position:
               
chr5:10261768-10261167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
629
               

               
Alignm identity:
               
428
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
297, 92
               

               
Conread position:
               
44-663
               

               
Cow position:
               
chr5:16894294-16893703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
621
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
562, 92
               

               
Conread position:
               
44-705
               

               
Cow position:
               
chr5:52165704-52165060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
670
               

               
Alignm identity:
               
455
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
621, 109
               

               
Conread position:
               
44-799
               

               
Cow position:
               
chr5:27007364-27008106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
769
               

               
Alignm identity:
               
558
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
224, 88
               

               
Conread position:
               
45-498
               

               
Cow position:
               
chr5:19470701-19470273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
296, 98
               

               
Conread position:
               
45-575
               

               
Cow position:
               
chr5:46295196-46294681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 96
               

               
Conread position:
               
45-671
               

               
Cow position:
               
chr5:45941158-45940533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
644
               

               
Alignm identity:
               
448
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 238
               

               
Conread position:
               
45-725
               

               
Cow position:
               
chr5:72041682-72042342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
697
               

               
Alignm identity:
               
479
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
244, 91
               

               
Conread position:
               
45-726
               

               
Cow position:
               
chr5:6044762-6045435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
696
               

               
Alignm identity:
               
478
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
296, 91
               

               
Conread position:
               
45-735
               

               
Cow position:
               
chr5:48535292-48535936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
696
               

               
Alignm identity:
               
483
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
211, 82
               

               
Conread position:
               
45-782
               

               
Cow position:
               
chr5:17027567-17028290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
747
               

               
Alignm identity:
               
543
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
295, 22
               

               
Conread position:
               
45-782
               

               
Cow position:
               
chr5:58748244-58748962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
751
               

               
Alignm identity:
               
524
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 96
               

               
Conread position:
               
45-790
               

               
Cow position:
               
chr5:40711980-40711244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
769
               

               
Alignm identity:
               
546
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 112
               

               
Conread position:
               
45-790
               

               
Cow position:
               
chr5:46611628-46610895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
765
               

               
Alignm identity:
               
517
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 237
               

               
Conread position:
               
45-801
               

               
Cow position:
               
chr5:48574302-48573567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
775
               

               
Alignm identity:
               
545
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
291, 93
               

               
Conread position:
               
49-709
               

               
Cow position:
               
chr5:68480679-68481344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
693
               

               
Alignm identity:
               
485
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 87
               

               
Conread position:
               
49-729
               

               
Cow position:
               
chr5:59303803-59303139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
691
               

               
Alignm identity:
               
480
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 163
               

               
Conread position:
               
49-794
               

               
Cow position:
               
chr5:68082481-68081774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
760
               

               
Alignm identity:
               
536
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 80
               

               
Conread position:
               
50-798
               

               
Cow position:
               
chr5:4630598-4631307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
759
               

               
Alignm identity:
               
529
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 91
               

               
Conread position:
               
54-782
               

               
Cow position:
               
chr5:41334093-41334804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
741
               

               
Alignm identity:
               
484
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
365, 73
               

               
Conread position:
               
55-549
               

               
Cow position:
               
chr5:20408171-20407710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
286, 5
               

               
Conread position:
               
56-790
               

               
Cow position:
               
chr5:27614985-27615715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
758
               

               
Alignm identity:
               
551
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 11
               

               
Conread position:
               
70-637
               

               
Cow position:
               
chr5:16184593-16185130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
569
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 66
               

               
Conread position:
               
87-679
               

               
Cow position:
               
chr5:65593391-65593959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
252, 56
               

               
Conread position:
               
110-521
               

               
Cow position:
               
chr5:11954757-11954370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
115, 26
               

               
Conread position:
               
159-500
               

               
Cow position:
               
chr5:48407002-48406649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
183, 6
               

               
Conread position:
               
159-505
               

               
Cow position:
               
chr5:41953229-41952890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
87, 61
               

               
Conread position:
               
159-723
               

               
Cow position:
               
chr5:19813638-19813083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
586
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 56
               

               
Conread position:
               
159-790
               

               
Cow position:
               
chr5:41604189-41604826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
642
               

               
Alignm identity:
               
470
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
234, 78
               

               
Conread position:
               
160-760
               

               
Cow position:
               
chr5:46510284-46509689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
616
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 65
               

               
Conread position:
               
160-790
               

               
Cow position:
               
chr5:28946480-28945858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
646
               

               
Alignm identity:
               
449
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 91
               

               
Conread position:
               
169-616
               

               
Cow position:
               
chr5:20974865-20974424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 112
               

               
Conread position:
               
176-610
               

               
Cow position:
               
chr5:39094153-39094572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 31
               

               
Conread position:
               
196-555
               

               
Cow position:
               
chr5:39675829-39675487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 29
               

               
Conread position:
               
198-625
               

               
Cow position:
               
chr5:40357268-40356830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 13
               

               
Conread position:
               
210-574
               

               
Cow position:
               
chr5:14539021-14538676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 65
               

               
Conread position:
               
211-725
               

               
Cow position:
               
chr5:6896495-6895989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 64
               

               
Conread position:
               
215-558
               

               
Cow position:
               
chr5:34915777-34916105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 29
               

               
Conread position:
               
217-599
               

               
Cow position:
               
chr5:23856527-23856155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 16
               

               
Conread position:
               
229-502
               

               
Cow position:
               
chr5:63967994-63967733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
229-709
               

               
Cow position:
               
chr5:35209825-35209355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 46
               

               
Conread position:
               
230-664
               

               
Cow position:
               
chr5:32141051-32140639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
18, 47
               

               
Conread position:
               
234-661
               

               
Cow position:
               
chr5:13691923-13691501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 41
               

               
Conread position:
               
234-711
               

               
Cow position:
               
chr5:38805692-38805221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 41
               

               
Conread position:
               
234-782
               

               
Cow position:
               
chr5:30332588-30333145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
580
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 41
               

               
Conread position:
               
235-781
               

               
Cow position:
               
chr5:40233785-40234305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
554
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 40
               

               
Conread position:
               
242-665
               

               
Cow position:
               
chr5:47313133-47313543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 34
               

               
Conread position:
               
246-668
               

               
Cow position:
               
chr5:52645416-52645007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 29
               

               
Conread position:
               
249-734
               

               
Cow position:
               
chr5:34183885-34184370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 26
               

               
Conread position:
               
250-599
               

               
Cow position:
               
chr5:43330025-43329685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 25
               

               
Conread position:
               
264-799
               

               
Cow position:
               
chr5:27103109-27102582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 11
               

               
Conread position:
               
266-790
               

               
Cow position:
               
chr5:39695339-39695854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
537
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 9
               

               
Conread position:
               
266-790
               

               
Cow position:
               
chr5:41599014-41598509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 9
               

               
Conread position:
               
267-664
               

               
Cow position:
               
chr5:6504182-6503812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
74, 36
               

               
Conread position:
               
272-798
               

               
Cow position:
               
chr5:24175060-24175581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 114
               

               
Conread position:
               
292-763
               

               
Cow position:
               
chr5:18113864-18113394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 87
               

               
Conread position:
               
297-500
               

               
Cow position:
               
chr5:57830293-57830091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
44, 89
               

               
Conread position:
               
310-712
               

               
Cow position:
               
chr5:63987720-63987320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
30, 69
               

               
Conread position:
               
316-696
               

               
Cow position:
               
chr5:31913076-31913455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
83, 27
               

               
Conread position:
               
317-708
               

               
Cow position:
               
chr5:22934722-22934335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 62
               

               
Conread position:
               
318-736
               

               
Cow position:
               
chr5:61488377-61487963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 62
               

               
Conread position:
               
321-614
               

               
Cow position:
               
chr5:24300017-24300305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
20, 70
               

               
Conread position:
               
322-799
               

               
Cow position:
               
chr5:13044667-13044200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 13
               

               
Conread position:
               
325-649
               

               
Cow position:
               
chr5:65924959-65924634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 63
               

               
Conread position:
               
326-772
               

               
Cow position:
               
chr5:26595360-26594914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
14, 47
               

               
Conread position:
               
326-782
               

               
Cow position:
               
chr5:1344115-1343662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 36
               

               
Conread position:
               
327-578
               

               
Cow position:
               
chr5:56753473-56753714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
329-756
               

               
Cow position:
               
chr5:23367028-23366596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 34
               

               
Conread position:
               
335-576
               

               
Cow position:
               
chr5:40595249-40595024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
335-616
               

               
Cow position:
               
chr5:1276723-1276440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 44
               

               
Conread position:
               
335-729
               

               
Cow position:
               
chr5:504156-503781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
26, 11
               

               
Conread position:
               
340-535
               

               
Cow position:
               
chr5:14703210-14703017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
340-664
               

               
Cow position:
               
chr5:55967125-55966811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
260, 45
               

               
Conread position:
               
340-781
               

               
Cow position:
               
chr5:51502770-51503197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
327, 45
               

               
Conread position:
               
341-577
               

               
Cow position:
               
chr5:40759738-40759961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
341-630
               

               
Cow position:
               
chr5:66831955-66831675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
341-709
               

               
Cow position:
               
chr5:37714146-37713778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 44
               

               
Conread position:
               
341-714
               

               
Cow position:
               
chr5:55989500-55989867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 44
               

               
Conread position:
               
341-723
               

               
Cow position:
               
chr5:26046093-26046458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
322, 37
               

               
Conread position:
               
341-738
               

               
Cow position:
               
chr5:22839714-22839329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
298, 41
               

               
Conread position:
               
341-798
               

               
Cow position:
               
chr5:55088904-55089352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
330, 44
               

               
Conread position:
               
341-800
               

               
Cow position:
               
chr5:56384986-56385426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
342-712
               

               
Cow position:
               
chr5:37646792-37646418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
93, 40
               

               
Conread position:
               
343-692
               

               
Cow position:
               
chr5:70582137-70581793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
267, 42
               

               
Conread position:
               
343-792
               

               
Cow position:
               
chr5:25919853-25919431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
324, 35
               

               
Conread position:
               
343-795
               

               
Cow position:
               
chr5:46798013-46798450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
293, 42
               

               
Conread position:
               
344-598
               

               
Cow position:
               
chr5:9859956-9859706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
114, 28
               

               
Conread position:
               
344-791
               

               
Cow position:
               
chr5:64398764-64399207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 162
               

               
Conread position:
               
346-735
               

               
Cow position:
               
chr5:48144027-48143641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
320, 39
               

               
Conread position:
               
348-725
               

               
Cow position:
               
chr5:24996458-24996085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
229, 44
               

               
Conread position:
               
349-792
               

               
Cow position:
               
chr5:41164855-41165306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
97, 42
               

               
Conread position:
               
350-800
               

               
Cow position:
               
chr5:41636641-41637075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
289, 28
               

               
Conread position:
               
351-797
               

               
Cow position:
               
chr5:40388097-40387672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
330, 34
               

               
Conread position:
               
354-789
               

               
Cow position:
               
chr5:71454824-71454410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
22, 36
               

               
Conread position:
               
354-790
               

               
Cow position:
               
chr5:25900092-25899673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 28
               

               
Conread position:
               
357-797
               

               
Cow position:
               
chr5:18104376-18103938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 28
               

               
Conread position:
               
358-689
               

               
Cow position:
               
chr5:12803271-12803612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 30
               

               
Conread position:
               
358-791
               

               
Cow position:
               
chr5:27411614-27411202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
305, 27
               

               
Conread position:
               
360-789
               

               
Cow position:
               
chr5:1950282-1949856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
267, 18
               

               
Conread position:
               
361-709
               

               
Cow position:
               
chr5:54111697-54112035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
296, 20
               

               
Conread position:
               
361-789
               

               
Cow position:
               
chr5:741170-740756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
62, 87
               

               
Conread position:
               
361-798
               

               
Cow position:
               
chr5:50425699-50425277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 24
               

               
Conread position:
               
361-800
               

               
Cow position:
               
chr5:48757723-48758153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
301, 27
               

               
Conread position:
               
363-790
               

               
Cow position:
               
chr5:39442073-39442499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
244, 19
               

               
Conread position:
               
367-592
               

               
Cow position:
               
chr5:62027161-62026946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
221, 12
               

               
Conread position:
               
369-790
               

               
Cow position:
               
chr5:3649677-3649261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 69
               

               
Conread position:
               
370-729
               

               
Cow position:
               
chr5:72344354-72344011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
33, 12
               

               
Conread position:
               
375-638
               

               
Cow position:
               
chr5:49680495-49680251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
27, 17
               

               
Conread position:
               
375-801
               

               
Cow position:
               
chr5:26262884-26262452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
21, 51
               

               
Conread position:
               
376-535
               

               
Cow position:
               
chr5:6196951-6196795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
380-739
               

               
Cow position:
               
chr5:24361329-24361665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
286, 64
               

               
Conread position:
               
385-729
               

               
Cow position:
               
chr5:32282131-32282475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 121
               

               
Conread position:
               
391-611
               

               
Cow position:
               
chr5:53146079-53145867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
391-801
               

               
Cow position:
               
chr5:34561815-34562242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
170, 112
               

               
Conread position:
               
396-634
               

               
Cow position:
               
chr5:7044899-7044666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
27, 32
               

               
Conread position:
               
397-748
               

               
Cow position:
               
chr5:31561348-31561695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 44
               

               
Conread position:
               
398-799
               

               
Cow position:
               
chr5:68330169-68329777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
268, 46
               

               
Conread position:
               
402-668
               

               
Cow position:
               
chr5:55928760-55929017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
186, 62
               

               
Conread position:
               
403-799
               

               
Cow position:
               
chr5:54089856-54090244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
23, 101
               

               
Conread position:
               
405-697
               

               
Cow position:
               
chr5:36486306-36486603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
56, 101
               

               
Conread position:
               
407-709
               

               
Cow position:
               
chr5:7552596-7552293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
259, 47
               

               
Conread position:
               
409-794
               

               
Cow position:
               
chr5:62638730-62639111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
160, 35
               

               
Conread position:
               
410-678
               

               
Cow position:
               
chr5:29980160-29979899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
166, 51
               

               
Conread position:
               
412-792
               

               
Cow position:
               
chr5:41452839-41452467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
267, 63
               

               
Conread position:
               
419-739
               

               
Cow position:
               
chr5:73526212-73526518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
217, 11
               

               
Conread position:
               
423-593
               

               
Cow position:
               
chr5:10248534-10248700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
85, 78
               

               
Conread position:
               
425-791
               

               
Cow position:
               
chr5:38629128-38629490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 10
               

               
Conread position:
               
426-711
               

               
Cow position:
               
chr5:16214529-16214812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
244, 28
               

               
Conread position:
               
426-756
               

               
Cow position:
               
chr5:3752707-3753019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
249, 26
               

               
Conread position:
               
427-789
               

               
Cow position:
               
chr5:37068734-37069083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
209, 77
               

               
Conread position:
               
428-782
               

               
Cow position:
               
chr5:47696599-47696246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
162, 40
               

               
Conread position:
               
428-790
               

               
Cow position:
               
chr5:23529433-23529080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
223, 53
               

               
Conread position:
               
429-701
               

               
Cow position:
               
chr5:21920212-21920485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
105, 77
               

               
Conread position:
               
429-736
               

               
Cow position:
               
chr5:33265602-33265317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
245, 33
               

               
Conread position:
               
433-738
               

               
Cow position:
               
chr5:44417506-44417211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
70, 46
               

               
Conread position:
               
440-782
               

               
Cow position:
               
chr5:39874977-39875319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
226, 16
               

               
Conread position:
               
442-668
               

               
Cow position:
               
chr5:39182057-39181843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
442-701
               

               
Cow position:
               
chr5:65883922-65883658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
170, 86
               

               
Conread position:
               
443-790
               

               
Cow position:
               
chr5:48405319-48404993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
446-781
               

               
Cow position:
               
chr5:73556328-73556007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
184, 46
               

               
Conread position:
               
458-782
               

               
Cow position:
               
chr5:63188454-63188136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
181, 29
               

               
Conread position:
               
468-737
               

               
Cow position:
               
chr5:36407038-36407303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
197, 36
               

               
Conread position:
               
480-783
               

               
Cow position:
               
chr5:4927675-4927362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
104, 26
               

               
Conread position:
               
481-714
               

               
Cow position:
               
chr5:21535221-21534984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
189, 9
               

               
Conread position:
               
501-785
               

               
Cow position:
               
chr5:17267983-17267696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
170, 25
               

               
Conread position:
               
506-800
               

               
Cow position:
               
chr5:57381457-57381758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
143, 20
               

               
Conread position:
               
509-756
               

               
Cow position:
               
chr5:18553815-18554061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
162, 18
               

               
Conread position:
               
521-732
               

               
Cow position:
               
chr5:17869619-17869830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
145, 182
               

               
Conread position:
               
521-776
               

               
Cow position:
               
chr5:41945778-41946036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
148, 17
               

               
Conread position:
               
535-800
               

               
Cow position:
               
chr5:66189930-66190197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
131, 45
               

               
Conread position:
               
541-792
               

               
Cow position:
               
chr5:67150062-67149813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
130, 60
               

               
Conread position:
               
543-810
               

               
Cow position:
               
chr5:34279650-34279393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
123, 52
               

               
Conread position:
               
563-759
               

               
Cow position:
               
chr5:49656051-49655856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
102, 32
               

               
Conread position:
               
563-790
               

               
Cow position:
               
chr5:21195143-21194920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
563-800
               

               
Cow position:
               
chr5:34914584-34914344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
103, 200
               

               
Conread position:
               
575-790
               

               
Cow position:
               
chr5:23527651-23527427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
15, 9
               

               
Conread position:
               
585-802
               

               
Cow position:
               
chr5:58343849-58344074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
587-794
               

               
Cow position:
               
chr5:15837897-15837688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
589-778
               

               
Cow position:
               
chr5:47681023-47680826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
606-802
               

               
Cow position:
               
chr5:75687318-75687116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
27, 133
               

               
Conread position:
               
613-790
               

               
Cow position:
               
chr5:42316890-42316712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
58, 14
               

               
Conread position:
               
615-782
               

               
Cow position:
               
chr5:36028124-36027955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
56, 118
               

               
Conread position:
               
623-792
               

               
Cow position:
               
chr5:21356857-21356687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
38, 108
               

               
Conread position:
               
667-800
               

               
Cow position:
               
chr5:17874183-17874317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
8, 38
               

               
Conread position:
               
671-804
               

               
Cow position:
               
chr5:39753571-39753442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
675-802
               

               
Cow position:
               
chr5:48067786-48067910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
676-798
               

               
Cow position:
               
chr5:33369544-33369662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
45, 0
               
Show alignments to all cow chromosomes.