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Cow genome map

           
Conread name:
           
Pig4-TMW8022I05
        

               
Conread position:
               
33-664
               

               
Cow position:
               
chrX:22812528-22813132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
634
               

               
Alignm identity:
               
432
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
308, 11
               

               
Conread position:
               
33-725
               

               
Cow position:
               
chrX:17743535-17744195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
698
               

               
Alignm identity:
               
490
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
588, 108
               

               
Conread position:
               
33-756
               

               
Cow position:
               
chrX:39546514-39545816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
729
               

               
Alignm identity:
               
532
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
308, 12
               

               
Conread position:
               
35-506
               

               
Cow position:
               
chrX:5353835-5353378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
306, 9
               

               
Conread position:
               
35-645
               

               
Cow position:
               
chrX:35680813-35681393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
622
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
306, 9
               

               
Conread position:
               
35-660
               

               
Cow position:
               
chrX:30455154-30454552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
628
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
306, 9
               

               
Conread position:
               
35-664
               

               
Cow position:
               
chrX:24105096-24105694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
631
               

               
Alignm identity:
               
434
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
306, 9
               

               
Conread position:
               
35-674
               

               
Cow position:
               
chrX:44192974-44192367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
642
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 10
               

               
Conread position:
               
35-790
               

               
Cow position:
               
chrX:38963581-38964321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
776
               

               
Alignm identity:
               
540
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
267, 9
               

               
Conread position:
               
36-647
               

               
Cow position:
               
chrX:32094981-32094393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
614
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
305, 21
               

               
Conread position:
               
41-500
               

               
Cow position:
               
chrX:13089834-13089375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
34, 96
               

               
Conread position:
               
44-500
               

               
Cow position:
               
chrX:38140564-38140119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 99
               

               
Conread position:
               
44-502
               

               
Cow position:
               
chrX:29915749-29915307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
297, 92
               

               
Conread position:
               
44-644
               

               
Cow position:
               
chrX:13785907-13785310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
613
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
334, 99
               

               
Conread position:
               
44-651
               

               
Cow position:
               
chrX:43408475-43409067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
615
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 88
               

               
Conread position:
               
44-663
               

               
Cow position:
               
chrX:44054279-44054870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
624
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 98
               

               
Conread position:
               
44-701
               

               
Cow position:
               
chrX:41879454-41878819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
665
               

               
Alignm identity:
               
454
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
297, 92
               

               
Conread position:
               
44-790
               

               
Cow position:
               
chrX:19878509-19879240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
759
               

               
Alignm identity:
               
505
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
297, 97
               

               
Conread position:
               
45-500
               

               
Cow position:
               
chrX:27323383-27322955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
45-598
               

               
Cow position:
               
chrX:2648884-2648345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
561
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
225, 62
               

               
Conread position:
               
45-669
               

               
Cow position:
               
chrX:27450574-27449923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
668
               

               
Alignm identity:
               
439
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 87
               

               
Conread position:
               
45-755
               

               
Cow position:
               
chrX:40268953-40269661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
731
               

               
Alignm identity:
               
503
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
296, 91
               

               
Conread position:
               
45-769
               

               
Cow position:
               
chrX:1977970-1978688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
744
               

               
Alignm identity:
               
542
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 76
               

               
Conread position:
               
45-790
               

               
Cow position:
               
chrX:160905-161624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
767
               

               
Alignm identity:
               
516
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
296, 96
               

               
Conread position:
               
46-782
               

               
Cow position:
               
chrX:23414910-23414180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
758
               

               
Alignm identity:
               
528
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 95
               

               
Conread position:
               
49-524
               

               
Cow position:
               
chrX:37906437-37906905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
164, 60
               

               
Conread position:
               
49-768
               

               
Cow position:
               
chrX:39125792-39126508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
747
               

               
Alignm identity:
               
495
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 82
               

               
Conread position:
               
49-790
               

               
Cow position:
               
chrX:17965035-17964322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
751
               

               
Alignm identity:
               
523
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
622, 87
               

               
Conread position:
               
50-511
               

               
Cow position:
               
chrX:25282008-25281539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
264, 86
               

               
Conread position:
               
50-715
               

               
Cow position:
               
chrX:28110977-28111638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
686
               

               
Alignm identity:
               
487
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
287, 81
               

               
Conread position:
               
51-728
               

               
Cow position:
               
chrX:3154776-3154101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
697
               

               
Alignm identity:
               
504
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 89
               

               
Conread position:
               
55-739
               

               
Cow position:
               
chrX:32743032-32743685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
693
               

               
Alignm identity:
               
519
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
287, 81
               

               
Conread position:
               
56-801
               

               
Cow position:
               
chrX:33803533-33802793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
757
               

               
Alignm identity:
               
568
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
285, 80
               

               
Conread position:
               
57-647
               

               
Cow position:
               
chrX:40827257-40826698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
595
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 87
               

               
Conread position:
               
60-712
               

               
Cow position:
               
chrX:34441951-34441327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
661
               

               
Alignm identity:
               
454
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
280, 26
               

               
Conread position:
               
62-744
               

               
Cow position:
               
chrX:5871811-5872474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
696
               

               
Alignm identity:
               
479
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
227, 74
               

               
Conread position:
               
73-575
               

               
Cow position:
               
chrX:12115546-12116030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
280, 63
               

               
Conread position:
               
80-803
               

               
Cow position:
               
chrX:14974226-14973520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
744
               

               
Alignm identity:
               
491
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 56
               

               
Conread position:
               
159-499
               

               
Cow position:
               
chrX:16847301-16846976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
57, 48
               

               
Conread position:
               
159-532
               

               
Cow position:
               
chrX:19210811-19210447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 6
               

               
Conread position:
               
159-587
               

               
Cow position:
               
chrX:25966634-25967031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
53, 6
               

               
Conread position:
               
159-589
               

               
Cow position:
               
chrX:160456-160034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 118
               

               
Conread position:
               
159-631
               

               
Cow position:
               
chrX:38439060-38439518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 48
               

               
Conread position:
               
159-646
               

               
Cow position:
               
chrX:48247252-48246795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 10
               

               
Conread position:
               
159-702
               

               
Cow position:
               
chrX:38936275-38936816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
558
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 118
               

               
Conread position:
               
159-771
               

               
Cow position:
               
chrX:630724-630126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
631
               

               
Alignm identity:
               
457
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 121
               

               
Conread position:
               
159-796
               

               
Cow position:
               
chrX:1616472-1615828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
656
               

               
Alignm identity:
               
464
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 6
               

               
Conread position:
               
160-800
               

               
Cow position:
               
chrX:36840446-36841074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
657
               

               
Alignm identity:
               
472
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 115
               

               
Conread position:
               
161-664
               

               
Cow position:
               
chrX:23564211-23563721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 45
               

               
Conread position:
               
162-500
               

               
Cow position:
               
chrX:18118884-18118555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
179, 45
               

               
Conread position:
               
167-728
               

               
Cow position:
               
chrX:30162598-30163147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
576
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 82
               

               
Conread position:
               
177-663
               

               
Cow position:
               
chrX:42171697-42171225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 30
               

               
Conread position:
               
178-508
               

               
Cow position:
               
chrX:46448231-46447907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
163, 97
               

               
Conread position:
               
182-789
               

               
Cow position:
               
chrX:32309701-32310305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
626
               

               
Alignm identity:
               
440
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 94
               

               
Conread position:
               
186-725
               

               
Cow position:
               
chrX:25419553-25419015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
440, 33
               

               
Conread position:
               
187-651
               

               
Cow position:
               
chrX:39700825-39701282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 20
               

               
Conread position:
               
187-758
               

               
Cow position:
               
chrX:2300537-2301096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
582
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 88
               

               
Conread position:
               
202-790
               

               
Cow position:
               
chrX:10301965-10302541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 55
               

               
Conread position:
               
206-781
               

               
Cow position:
               
chrX:28786994-28787535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
582
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 55
               

               
Conread position:
               
207-737
               

               
Cow position:
               
chrX:11561771-11562297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 12
               

               
Conread position:
               
208-811
               

               
Cow position:
               
chrX:15049099-15049708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
625
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 67
               

               
Conread position:
               
210-550
               

               
Cow position:
               
chrX:48227989-48227649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
33, 14
               

               
Conread position:
               
211-743
               

               
Cow position:
               
chrX:2786916-2786400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 66
               

               
Conread position:
               
219-558
               

               
Cow position:
               
chrX:34663222-34662880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
30, 57
               

               
Conread position:
               
223-664
               

               
Cow position:
               
chrX:47967243-47967677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
383, 7
               

               
Conread position:
               
228-499
               

               
Cow position:
               
chrX:44731247-44731510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
228-767
               

               
Cow position:
               
chrX:47743725-47744268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
554
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 27
               

               
Conread position:
               
233-656
               

               
Cow position:
               
chrX:25232238-25232655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 43
               

               
Conread position:
               
234-782
               

               
Cow position:
               
chrX:48248474-48249017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 43
               

               
Conread position:
               
238-789
               

               
Cow position:
               
chrX:31443163-31442616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 37
               

               
Conread position:
               
246-712
               

               
Cow position:
               
chrX:38007103-38006643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 29
               

               
Conread position:
               
247-800
               

               
Cow position:
               
chrX:7645924-7646470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 28
               

               
Conread position:
               
251-669
               

               
Cow position:
               
chrX:5638498-5638094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 24
               

               
Conread position:
               
255-531
               

               
Cow position:
               
chrX:18990126-18989850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
83, 20
               

               
Conread position:
               
255-790
               

               
Cow position:
               
chrX:25337851-25338388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 20
               

               
Conread position:
               
258-713
               

               
Cow position:
               
chrX:9161265-9161702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 17
               

               
Conread position:
               
264-790
               

               
Cow position:
               
chrX:20376653-20377167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
407, 11
               

               
Conread position:
               
265-716
               

               
Cow position:
               
chrX:13323335-13322860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 10
               

               
Conread position:
               
266-790
               

               
Cow position:
               
chrX:25713494-25713999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 9
               

               
Conread position:
               
273-575
               

               
Cow position:
               
chrX:14924691-14924985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 119
               

               
Conread position:
               
276-706
               

               
Cow position:
               
chrX:11314084-11313665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 101
               

               
Conread position:
               
278-794
               

               
Cow position:
               
chrX:5047201-5046706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 108
               

               
Conread position:
               
283-640
               

               
Cow position:
               
chrX:44835115-44834760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
59, 103
               

               
Conread position:
               
290-749
               

               
Cow position:
               
chrX:619297-618845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
274, 17
               

               
Conread position:
               
300-664
               

               
Cow position:
               
chrX:16762490-16762841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
92, 79
               

               
Conread position:
               
303-501
               

               
Cow position:
               
chrX:48211260-48211062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
15, 35
               

               
Conread position:
               
304-647
               

               
Cow position:
               
chrX:12017997-12018345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
37, 88
               

               
Conread position:
               
304-789
               

               
Cow position:
               
chrX:6675203-6674712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 67
               

               
Conread position:
               
305-801
               

               
Cow position:
               
chrX:8925429-8925915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
11, 7
               

               
Conread position:
               
307-647
               

               
Cow position:
               
chrX:158044-157719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
34, 62
               

               
Conread position:
               
307-717
               

               
Cow position:
               
chrX:47191670-47191286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
283, 37
               

               
Conread position:
               
309-803
               

               
Cow position:
               
chrX:30421213-30420731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
25, 78
               

               
Conread position:
               
316-617
               

               
Cow position:
               
chrX:488224-488518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 63
               

               
Conread position:
               
323-654
               

               
Cow position:
               
chrX:27509279-27508962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
18, 69
               

               
Conread position:
               
323-722
               

               
Cow position:
               
chrX:20151591-20151992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
18, 63
               

               
Conread position:
               
326-800
               

               
Cow position:
               
chrX:7496989-7497447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 47
               

               
Conread position:
               
327-800
               

               
Cow position:
               
chrX:19930402-19930857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 23
               

               
Conread position:
               
329-762
               

               
Cow position:
               
chrX:27176573-27176138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 63
               

               
Conread position:
               
330-800
               

               
Cow position:
               
chrX:23497915-23497463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
11, 48
               

               
Conread position:
               
332-654
               

               
Cow position:
               
chrX:24366079-24365761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
9, 30
               

               
Conread position:
               
335-590
               

               
Cow position:
               
chrX:2383241-2383488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
11, 46
               

               
Conread position:
               
335-705
               

               
Cow position:
               
chrX:30729652-30729293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
18, 51
               

               
Conread position:
               
335-760
               

               
Cow position:
               
chrX:24259824-24259408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
337, 47
               

               
Conread position:
               
335-788
               

               
Cow position:
               
chrX:29761928-29761481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
263, 44
               

               
Conread position:
               
336-731
               

               
Cow position:
               
chrX:28579976-28580364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
335, 46
               

               
Conread position:
               
336-790
               

               
Cow position:
               
chrX:40788958-40789407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 56
               

               
Conread position:
               
340-500
               

               
Cow position:
               
chrX:36154813-36154659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
340-645
               

               
Cow position:
               
chrX:30862061-30862367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
143, 45
               

               
Conread position:
               
340-765
               

               
Cow position:
               
chrX:17631043-17630622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
323, 45
               

               
Conread position:
               
340-815
               

               
Cow position:
               
chrX:18287293-18286855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
332, 15
               

               
Conread position:
               
341-537
               

               
Cow position:
               
chrX:47243519-47243319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
106, 50
               

               
Conread position:
               
341-617
               

               
Cow position:
               
chrX:8682170-8681900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
269, 47
               

               
Conread position:
               
341-667
               

               
Cow position:
               
chrX:8517636-8517945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
341-712
               

               
Cow position:
               
chrX:11455292-11454922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
168, 37
               

               
Conread position:
               
341-725
               

               
Cow position:
               
chrX:16284187-16283804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
273, 44
               

               
Conread position:
               
341-725
               

               
Cow position:
               
chrX:29032177-29032547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 41
               

               
Conread position:
               
341-734
               

               
Cow position:
               
chrX:2029150-2029534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
280, 37
               

               
Conread position:
               
341-756
               

               
Cow position:
               
chrX:24132391-24131983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
298, 44
               

               
Conread position:
               
341-790
               

               
Cow position:
               
chrX:6203315-6203745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
330, 40
               

               
Conread position:
               
341-790
               

               
Cow position:
               
chrX:6563272-6563721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 44
               

               
Conread position:
               
341-791
               

               
Cow position:
               
chrX:16416268-16416700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
275, 44
               

               
Conread position:
               
341-800
               

               
Cow position:
               
chrX:40692978-40692538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
324, 44
               

               
Conread position:
               
341-800
               

               
Cow position:
               
chrX:42011040-42011495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
308, 37
               

               
Conread position:
               
341-801
               

               
Cow position:
               
chrX:27287959-27287524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
331, 37
               

               
Conread position:
               
341-804
               

               
Cow position:
               
chrX:7425224-7425685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 39
               

               
Conread position:
               
343-661
               

               
Cow position:
               
chrX:27680165-27680465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
343-769
               

               
Cow position:
               
chrX:26940729-26940335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
345-664
               

               
Cow position:
               
chrX:11589828-11589518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
47, 79
               

               
Conread position:
               
349-664
               

               
Cow position:
               
chrX:48010362-48010674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
263, 42
               

               
Conread position:
               
349-709
               

               
Cow position:
               
chrX:6278738-6278376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
239, 42
               

               
Conread position:
               
350-790
               

               
Cow position:
               
chrX:18456161-18456604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 30
               

               
Conread position:
               
350-790
               

               
Cow position:
               
chrX:32431396-32431823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
70, 32
               

               
Conread position:
               
351-575
               

               
Cow position:
               
chrX:37048811-37048593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
352-799
               

               
Cow position:
               
chrX:11746613-11747043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 26
               

               
Conread position:
               
352-810
               

               
Cow position:
               
chrX:21664952-21664503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
314, 33
               

               
Conread position:
               
353-622
               

               
Cow position:
               
chrX:4482734-4482994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
65, 42
               

               
Conread position:
               
354-815
               

               
Cow position:
               
chrX:11856202-11856651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
364, 37
               

               
Conread position:
               
355-654
               

               
Cow position:
               
chrX:3146970-3147259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
36, 91
               

               
Conread position:
               
356-615
               

               
Cow position:
               
chrX:21642703-21642455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
215, 22
               

               
Conread position:
               
356-637
               

               
Cow position:
               
chrX:29509669-29509395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
220, 35
               

               
Conread position:
               
356-717
               

               
Cow position:
               
chrX:9041454-9041113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
292, 22
               

               
Conread position:
               
356-815
               

               
Cow position:
               
chrX:20792043-20791593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
280, 29
               

               
Conread position:
               
357-750
               

               
Cow position:
               
chrX:17042466-17042848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
316, 28
               

               
Conread position:
               
361-736
               

               
Cow position:
               
chrX:29602053-29601677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
305, 18
               

               
Conread position:
               
361-815
               

               
Cow position:
               
chrX:46073042-46072581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
305, 21
               

               
Conread position:
               
364-638
               

               
Cow position:
               
chrX:28836121-28835858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
369-570
               

               
Cow position:
               
chrX:27174782-27174976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
182, 23
               

               
Conread position:
               
370-678
               

               
Cow position:
               
chrX:841947-842248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
236, 21
               

               
Conread position:
               
374-794
               

               
Cow position:
               
chrX:8917645-8918041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
223, 8
               

               
Conread position:
               
374-800
               

               
Cow position:
               
chrX:4826035-4825614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
296, 11
               

               
Conread position:
               
375-655
               

               
Cow position:
               
chrX:36961428-36961702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
122, 17
               

               
Conread position:
               
377-702
               

               
Cow position:
               
chrX:16687229-16687555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
19, 35
               

               
Conread position:
               
382-791
               

               
Cow position:
               
chrX:31340502-31340916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 125
               

               
Conread position:
               
391-668
               

               
Cow position:
               
chrX:33000711-33000979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
228, 87
               

               
Conread position:
               
395-678
               

               
Cow position:
               
chrX:40809498-40809784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
210, 28
               

               
Conread position:
               
397-787
               

               
Cow position:
               
chrX:47177967-47178343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
277, 12
               

               
Conread position:
               
399-592
               

               
Cow position:
               
chrX:14003827-14003641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
402-611
               

               
Cow position:
               
chrX:38188264-38188056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
5, 105
               

               
Conread position:
               
404-592
               

               
Cow position:
               
chrX:30005089-30005265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
405-791
               

               
Cow position:
               
chrX:16514443-16514070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
258, 39
               

               
Conread position:
               
406-709
               

               
Cow position:
               
chrX:29680438-29680139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
15, 30
               

               
Conread position:
               
407-790
               

               
Cow position:
               
chrX:38999667-39000052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 16
               

               
Conread position:
               
409-655
               

               
Cow position:
               
chrX:46146735-46146500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
411-725
               

               
Cow position:
               
chrX:46433310-46433630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
110, 119
               

               
Conread position:
               
415-782
               

               
Cow position:
               
chrX:23666954-23667312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
221, 39
               

               
Conread position:
               
423-707
               

               
Cow position:
               
chrX:40642807-40643099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
48, 98
               

               
Conread position:
               
423-730
               

               
Cow position:
               
chrX:33590567-33590858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
224, 33
               

               
Conread position:
               
428-731
               

               
Cow position:
               
chrX:25193505-25193802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
218, 24
               

               
Conread position:
               
429-634
               

               
Cow position:
               
chrX:24747550-24747354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
173, 89
               

               
Conread position:
               
429-647
               

               
Cow position:
               
chrX:8913765-8913976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
429-647
               

               
Cow position:
               
chrX:8915509-8915720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
430-634
               

               
Cow position:
               
chrX:29055966-29056158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
434-791
               

               
Cow position:
               
chrX:21986446-21986076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
10, 75
               

               
Conread position:
               
434-800
               

               
Cow position:
               
chrX:20584169-20584548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
26, 76
               

               
Conread position:
               
435-800
               

               
Cow position:
               
chrX:39415518-39415156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
236, 33
               

               
Conread position:
               
442-597
               

               
Cow position:
               
chrX:31273098-31273252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
15, 63
               

               
Conread position:
               
444-809
               

               
Cow position:
               
chrX:11614556-11614917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
209, 72
               

               
Conread position:
               
446-669
               

               
Cow position:
               
chrX:21566261-21566482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
451-790
               

               
Cow position:
               
chrX:22325978-22326318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
13, 85
               

               
Conread position:
               
458-736
               

               
Cow position:
               
chrX:26493766-26493496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
467-794
               

               
Cow position:
               
chrX:6656266-6656589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
184, 37
               

               
Conread position:
               
468-791
               

               
Cow position:
               
chrX:18142574-18142255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
203, 38
               

               
Conread position:
               
495-714
               

               
Cow position:
               
chrX:7344993-7345211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
171, 32
               

               
Conread position:
               
498-662
               

               
Cow position:
               
chrX:17896041-17895883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
499-714
               

               
Cow position:
               
chrX:25441082-25440875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
173, 10
               

               
Conread position:
               
501-802
               

               
Cow position:
               
chrX:6632986-6633280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
5, 96
               

               
Conread position:
               
501-802
               

               
Cow position:
               
chrX:9539236-9539532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
170, 11
               

               
Conread position:
               
501-802
               

               
Cow position:
               
chrX:9839140-9839435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
170, 11
               

               
Conread position:
               
504-709
               

               
Cow position:
               
chrX:17635059-17635254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
99, 21
               

               
Conread position:
               
506-782
               

               
Cow position:
               
chrX:26619193-26618922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
15, 76
               

               
Conread position:
               
527-803
               

               
Cow position:
               
chrX:43426228-43426505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
87, 76
               

               
Conread position:
               
539-782
               

               
Cow position:
               
chrX:29408077-29407828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
132, 218
               

               
Conread position:
               
541-791
               

               
Cow position:
               
chrX:46083922-46084177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
112, 36
               

               
Conread position:
               
543-800
               

               
Cow position:
               
chrX:34356015-34355762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
132, 52
               

               
Conread position:
               
555-793
               

               
Cow position:
               
chrX:48089441-48089197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
119, 51
               

               
Conread position:
               
563-777
               

               
Cow position:
               
chrX:35759967-35759745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
565-797
               

               
Cow position:
               
chrX:21640399-21640634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
39, 167
               

               
Conread position:
               
585-782
               

               
Cow position:
               
chrX:23179288-23179086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
26, 10
               

               
Conread position:
               
587-800
               

               
Cow position:
               
chrX:29874377-29874158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
80, 128
               

               
Conread position:
               
591-792
               

               
Cow position:
               
chrX:8780042-8780249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
75, 12
               

               
Conread position:
               
596-766
               

               
Cow position:
               
chrX:16419153-16419326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
605-796
               

               
Cow position:
               
chrX:12304572-12304770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
67, 149
               

               
Conread position:
               
612-790
               

               
Cow position:
               
chrX:34470738-34470914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
35, 47
               

               
Conread position:
               
671-790
               

               
Cow position:
               
chrX:46028677-46028558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
671-800
               

               
Cow position:
               
chrX:488763-488889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
671-800
               

               
Cow position:
               
chrX:31273287-31273416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
677-802
               

               
Cow position:
               
chrX:4545263-4545143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
81, 0
               
Show alignments to all cow chromosomes.