Cow genome map

Conread name: Pig4-TMW8023I01

Conread position: 3-269
Cow position: chr5:23939231-23939499 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 183
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 73, 13

Conread position: 3-728
Cow position: chr5:37378434-37379179 (view UCSC Genome Browser custom track)
Alignm length: 766
Alignm identity: 520
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 181

Conread position: 3-799
Cow position: chr5:3965757-3966552 (view UCSC Genome Browser custom track)
Alignm length: 830
Alignm identity: 570
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 213

Conread position: 3-799
Cow position: chr5:4756875-4756061 (view UCSC Genome Browser custom track)
Alignm length: 836
Alignm identity: 576
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 196

Conread position: 3-799
Cow position: chr5:18121174-18120359 (view UCSC Genome Browser custom track)
Alignm length: 835
Alignm identity: 584
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 207

Conread position: 3-799
Cow position: chr5:23959022-23958210 (view UCSC Genome Browser custom track)
Alignm length: 835
Alignm identity: 580
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 222

Conread position: 3-799
Cow position: chr5:31707871-31708702 (view UCSC Genome Browser custom track)
Alignm length: 838
Alignm identity: 586
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 222

Conread position: 3-799
Cow position: chr5:58197324-58198141 (view UCSC Genome Browser custom track)
Alignm length: 836
Alignm identity: 572
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 222

Conread position: 3-799
Cow position: chr5:59061944-59062758 (view UCSC Genome Browser custom track)
Alignm length: 833
Alignm identity: 583
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 448

Conread position: 3-832
Cow position: chr5:28333177-28332393 (view UCSC Genome Browser custom track)
Alignm length: 845
Alignm identity: 647
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 218

Conread position: 38-799
Cow position: chr5:4684461-4683683 (view UCSC Genome Browser custom track)
Alignm length: 799
Alignm identity: 556
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 26

Conread position: 38-799
Cow position: chr5:5104558-5105342 (view UCSC Genome Browser custom track)
Alignm length: 797
Alignm identity: 567
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 172

Conread position: 38-803
Cow position: chr5:10920181-10920965 (view UCSC Genome Browser custom track)
Alignm length: 804
Alignm identity: 548
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 109

Conread position: 38-803
Cow position: chr5:18560064-18559279 (view UCSC Genome Browser custom track)
Alignm length: 807
Alignm identity: 540
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 33

Conread position: 38-803
Cow position: chr5:23830977-23830199 (view UCSC Genome Browser custom track)
Alignm length: 799
Alignm identity: 540
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 94

Conread position: 38-803
Cow position: chr5:24295957-24296728 (view UCSC Genome Browser custom track)
Alignm length: 792
Alignm identity: 548
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 34

Conread position: 38-803
Cow position: chr5:37733692-37734471 (view UCSC Genome Browser custom track)
Alignm length: 803
Alignm identity: 554
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 436

Conread position: 38-803
Cow position: chr5:43988445-43989186 (view UCSC Genome Browser custom track)
Alignm length: 776
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 171

Conread position: 38-803
Cow position: chr5:64780671-64779886 (view UCSC Genome Browser custom track)
Alignm length: 804
Alignm identity: 551
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 187

Conread position: 38-803
Cow position: chr5:76096395-76097181 (view UCSC Genome Browser custom track)
Alignm length: 807
Alignm identity: 544
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 95

Conread position: 38-809
Cow position: chr5:6153555-6152762 (view UCSC Genome Browser custom track)
Alignm length: 810
Alignm identity: 566
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 644

Conread position: 38-831
Cow position: chr5:59283659-59284450 (view UCSC Genome Browser custom track)
Alignm length: 824
Alignm identity: 565
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 192

Conread position: 38-832
Cow position: chr5:12731372-12730568 (view UCSC Genome Browser custom track)
Alignm length: 833
Alignm identity: 577
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 172

Conread position: 43-803
Cow position: chr5:24099999-24100769 (view UCSC Genome Browser custom track)
Alignm length: 795
Alignm identity: 540
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 12

Conread position: 43-832
Cow position: chr5:69622938-69623719 (view UCSC Genome Browser custom track)
Alignm length: 826
Alignm identity: 526
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 31, 216

Conread position: 44-338
Cow position: chr5:9037792-9037487 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 212
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 32, 115

Conread position: 44-803
Cow position: chr5:5666236-5665478 (view UCSC Genome Browser custom track)
Alignm length: 789
Alignm identity: 534
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 86

Conread position: 48-803
Cow position: chr5:21918750-21919482 (view UCSC Genome Browser custom track)
Alignm length: 773
Alignm identity: 555
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 99

Conread position: 61-554
Cow position: chr5:14784000-14783506 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 114

Conread position: 67-803
Cow position: chr5:12642062-12641323 (view UCSC Genome Browser custom track)
Alignm length: 770
Alignm identity: 526
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 206

Conread position: 75-486
Cow position: chr5:33188043-33188430 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 274
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 224, 69

Conread position: 75-803
Cow position: chr5:4386607-4387348 (view UCSC Genome Browser custom track)
Alignm length: 756
Alignm identity: 515
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 103

Conread position: 84-399
Cow position: chr5:31100046-31099708 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 233
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 66, 5

Conread position: 85-511
Cow position: chr5:66495699-66496127 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 301
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 7, 48

Conread position: 93-799
Cow position: chr5:58191363-58190640 (view UCSC Genome Browser custom track)
Alignm length: 744
Alignm identity: 527
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 178

Conread position: 93-832
Cow position: chr5:1228191-1228934 (view UCSC Genome Browser custom track)
Alignm length: 774
Alignm identity: 512
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 170

Conread position: 100-799
Cow position: chr5:46665406-46666121 (view UCSC Genome Browser custom track)
Alignm length: 739
Alignm identity: 507
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 29

Conread position: 110-803
Cow position: chr5:29767531-29768243 (view UCSC Genome Browser custom track)
Alignm length: 731
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 80

Conread position: 129-799
Cow position: chr5:49118903-49118219 (view UCSC Genome Browser custom track)
Alignm length: 707
Alignm identity: 487
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 44

Conread position: 230-645
Cow position: chr5:34904176-34904597 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 185

Conread position: 230-799
Cow position: chr5:57963997-57963422 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 29

Conread position: 230-803
Cow position: chr5:49520259-49520835 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 126

Conread position: 230-832
Cow position: chr5:1340379-1339778 (view UCSC Genome Browser custom track)
Alignm length: 625
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 252

Conread position: 234-803
Cow position: chr5:55834241-55833683 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 101

Conread position: 256-799
Cow position: chr5:46791424-46791965 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 303

Conread position: 274-803
Cow position: chr5:54787523-54786998 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 224

Conread position: 306-803
Cow position: chr5:47079943-47080416 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 37

Conread position: 307-799
Cow position: chr5:42506384-42506876 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 336

Conread position: 327-799
Cow position: chr5:59145020-59145487 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 322

Conread position: 338-803
Cow position: chr5:25930011-25929567 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 35

Conread position: 344-803
Cow position: chr5:48806769-48806317 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 315

Conread position: 353-803
Cow position: chr5:12681161-12680698 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 50

Conread position: 370-775
Cow position: chr5:62203270-62203664 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 40

Conread position: 429-803
Cow position: chr5:7584232-7583869 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 268
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 135, 101

Conread position: 449-797
Cow position: chr5:9056434-9056775 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 198

Conread position: 457-799
Cow position: chr5:4964589-4964254 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 245
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 70, 190

Conread position: 460-803
Cow position: chr5:57001278-57001621 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 240
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 65, 86

Conread position: 462-803
Cow position: chr5:26626422-26626085 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 240
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 65, 179

Conread position: 500-797
Cow position: chr5:13407421-13407711 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 228
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 24, 147

Conread position: 522-799
Cow position: chr5:51167470-51167184 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 190
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 34, 0

Conread position: 525-797
Cow position: chr5:29031122-29031385 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 211
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 42, 120

Conread position: 540-797
Cow position: chr5:28344824-28345074 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 190
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 20, 107

Conread position: 552-799
Cow position: chr5:41066061-41066296 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 186
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 22, 90

Conread position: 557-803
Cow position: chr5:6527811-6528045 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 178
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 98, 13

Conread position: 564-803
Cow position: chr5:70616835-70617063 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 176
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 165, 71

Conread position: 586-803
Cow position: chr5:58244903-58244700 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 161
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 144, 63

Conread position: 595-803
Cow position: chr5:14523869-14523667 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 154
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 32, 53

Conread position: 628-831
Cow position: chr5:50391160-50390963 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 153
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 11, 51

Conread position: 642-797
Cow position: chr5:11923167-11923014 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 122
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 13, 36

Conread position: 642-797
Cow position: chr5:30567234-30567388 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 122
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 13, 36

Conread position: 658-799
Cow position: chr5:10514298-10514160 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 115
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 72, 19

Show alignments to all cow chromosomes.