Cow genome map
| Conread name: | Pig4-TMW8026F11 |
| Conread position: | 256-494 |
| Cow position: | chr12:43974521-43974278 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 16, 31 |
| Conread position: | 284-483 |
| Cow position: | chr12:38774039-38774242 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 80, 15 |
| Conread position: | 286-494 |
| Cow position: | chr12:3454909-3454684 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 287-484 |
| Cow position: | chr12:3371663-3371857 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 70, 21 |
| Conread position: | 289-502 |
| Cow position: | chr12:30590964-30590749 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 11, 65 |
| Conread position: | 295-484 |
| Cow position: | chr12:20479140-20479338 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 295-501 |
| Cow position: | chr12:12699442-12699658 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 160 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 65, 37 |
| Conread position: | 296-499 |
| Cow position: | chr12:42180942-42181144 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 5, 37 |
| Conread position: | 296-500 |
| Cow position: | chr12:25456614-25456393 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 68, 36 |
| Conread position: | 297-499 |
| Cow position: | chr12:21780354-21780147 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 36, 67 |
| Conread position: | 298-500 |
| Cow position: | chr12:6958413-6958204 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 61, 36 |
| Conread position: | 300-492 |
| Cow position: | chr12:20654298-20654486 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 33, 51 |
| Conread position: | 306-482 |
| Cow position: | chr12:23714859-23714676 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 307-499 |
| Cow position: | chr12:42286152-42285955 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 21, 91 |
| Conread position: | 307-503 |
| Cow position: | chr12:12301114-12300899 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 312-470 |
| Cow position: | chr12:19258458-19258290 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 312-499 |
| Cow position: | chr12:30042903-30042710 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 12, 52 |
| Conread position: | 313-493 |
| Cow position: | chr12:21903948-21903774 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 16, 45 |
| Conread position: | 314-499 |
| Cow position: | chr12:24396986-24397178 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 46, 159 |
| Conread position: | 314-499 |
| Cow position: | chr12:39149868-39150067 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 315-509 |
| Cow position: | chr12:43610694-43610884 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 10, 64 |
| Conread position: | 316-480 |
| Cow position: | chr12:26868639-26868810 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 13, 22 |
| Conread position: | 316-490 |
| Cow position: | chr12:43645329-43645504 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 15, 95 |
| Conread position: | 316-498 |
| Cow position: | chr12:35137095-35136904 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 316-500 |
| Cow position: | chr12:7110385-7110182 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 6, 15 |
| Conread position: | 318-499 |
| Cow position: | chr12:14223158-14222966 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 318-499 |
| Cow position: | chr12:26749774-26749967 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 318-499 |
| Cow position: | chr12:30806025-30805838 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 27, 14 |
| Conread position: | 318-499 |
| Cow position: | chr12:37123819-37123634 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 36, 32 |
| Conread position: | 318-499 |
| Cow position: | chr12:45001895-45002082 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 319-490 |
| Cow position: | chr12:43644001-43644173 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 12, 92 |
| Conread position: | 319-497 |
| Cow position: | chr12:7884505-7884694 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 319-498 |
| Cow position: | chr12:35770850-35771035 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 319-499 |
| Cow position: | chr12:48415346-48415531 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 43, 90 |
| Conread position: | 320-470 |
| Cow position: | chr12:19697568-19697414 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 18, 84 |
| Conread position: | 320-499 |
| Cow position: | chr12:4720107-4719932 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 12, 31 |
| Conread position: | 321-496 |
| Cow position: | chr12:46333516-46333333 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 16, 120 |
| Conread position: | 322-499 |
| Cow position: | chr12:3586285-3586103 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 37, 54 |
| Conread position: | 323-470 |
| Cow position: | chr12:21819592-21819446 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 84, 20 |
| Conread position: | 326-470 |
| Cow position: | chr12:44892376-44892221 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 35, 120 |
| Conread position: | 327-470 |
| Cow position: | chr12:26576058-26575910 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 34, 83 |
| Conread position: | 327-499 |
| Cow position: | chr12:33976369-33976184 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 328-552 |
| Cow position: | chr12:28598436-28598179 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 332-499 |
| Cow position: | chr12:8943054-8943239 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 334-483 |
| Cow position: | chr12:42562057-42561902 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 25, 84 |
| Conread position: | 334-493 |
| Cow position: | chr12:15509612-15509771 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 334-493 |
| Cow position: | chr12:24391461-24391310 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 92, 23 |
| Conread position: | 334-498 |
| Cow position: | chr12:43855049-43854879 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 30, 65 |
| Conread position: | 334-499 |
| Cow position: | chr12:6410577-6410750 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 25, 46 |
| Conread position: | 334-499 |
| Cow position: | chr12:26357208-26357386 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 334-501 |
| Cow position: | chr12:29057549-29057372 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 335-493 |
| Cow position: | chr12:26945687-26945844 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 91, 68 |
| Conread position: | 336-496 |
| Cow position: | chr12:22859607-22859450 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 90, 46 |
| Conread position: | 340-484 |
| Cow position: | chr12:29779773-29779914 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 7, 13 |
| Conread position: | 340-495 |
| Cow position: | chr12:41159734-41159576 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 134 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 344-456 |
| Cow position: | chr12:10861884-10861775 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 79, 52 |
| Conread position: | 360-484 |
| Cow position: | chr12:14987924-14987799 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 360-484 |
| Cow position: | chr12:17744740-17744864 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 105 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 51, 36 |
| Conread position: | 360-484 |
| Cow position: | chr12:21389998-21389871 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 99 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 360-490 |
| Cow position: | chr12:44861133-44861266 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 360-498 |
| Cow position: | chr12:5635328-5635468 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 360-498 |
| Cow position: | chr12:26147044-26147184 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 360-498 |
| Cow position: | chr12:33323370-33323510 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 360-499 |
| Cow position: | chr12:4866938-4866802 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 66, 28 |
| Conread position: | 360-499 |
| Cow position: | chr12:20355347-20355200 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 360-499 |
| Cow position: | chr12:25417451-25417585 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 63, 12 |
| Conread position: | 360-499 |
| Cow position: | chr12:38126397-38126539 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 362-499 |
| Cow position: | chr12:11106456-11106596 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 362-499 |
| Cow position: | chr12:23574892-23574748 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 369-499 |
| Cow position: | chr12:9514479-9514346 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 371-483 |
| Cow position: | chr12:35124005-35123890 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 376-499 |
| Cow position: | chr12:24222411-24222536 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 382-499 |
| Cow position: | chr12:27430610-27430491 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 94 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 388-500 |
| Cow position: | chr12:22341344-22341231 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 17, 102 |
| Conread position: | 389-499 |
| Cow position: | chr12:42698150-42698260 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 90 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 34, 98 |
| Conread position: | 390-499 |
| Cow position: | chr12:41474184-41474074 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 33, 0 |
Show alignments to all cow chromosomes.