Cow genome map
| Conread name: | Pig4-TMW8026F11 |
| Conread position: | 233-495 |
| Cow position: | chr28:7697679-7697950 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 128, 70 |
| Conread position: | 269-430 |
| Cow position: | chr28:25283855-25283694 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 117 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 29, 129 |
| Conread position: | 279-499 |
| Cow position: | chr28:3424037-3423805 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 33, 16 |
| Conread position: | 279-499 |
| Cow position: | chr28:4307639-4307869 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 43, 33 |
| Conread position: | 284-501 |
| Cow position: | chr28:7350900-7350680 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 157 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 45, 10 |
| Conread position: | 286-483 |
| Cow position: | chr28:17620110-17620317 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 74, 26 |
| Conread position: | 288-484 |
| Cow position: | chr28:2077742-2077543 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 71, 24 |
| Conread position: | 288-499 |
| Cow position: | chr28:26982499-26982710 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 42, 16 |
| Conread position: | 289-493 |
| Cow position: | chr28:2593915-2593715 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 136, 0 |
| Conread position: | 299-499 |
| Cow position: | chr28:10615713-10615918 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 64, 110 |
| Conread position: | 299-503 |
| Cow position: | chr28:2820004-2819798 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 21, 9 |
| Conread position: | 300-478 |
| Cow position: | chr28:24646821-24646640 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 22, 106 |
| Conread position: | 305-499 |
| Cow position: | chr28:13048054-13048256 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 305-499 |
| Cow position: | chr28:24707129-24706925 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 96, 32 |
| Conread position: | 308-484 |
| Cow position: | chr28:4027239-4027420 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 16, 70 |
| Conread position: | 310-483 |
| Cow position: | chr28:6563669-6563853 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 135 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 54, 26 |
| Conread position: | 312-484 |
| Cow position: | chr28:9740682-9740509 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 312-487 |
| Cow position: | chr28:24726226-24726397 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 27, 50 |
| Conread position: | 312-490 |
| Cow position: | chr28:1930686-1930859 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 114, 18 |
| Conread position: | 312-493 |
| Cow position: | chr28:24651391-24651572 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 17, 95 |
| Conread position: | 312-499 |
| Cow position: | chr28:11307295-11307491 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 49, 24 |
| Conread position: | 313-487 |
| Cow position: | chr28:5805885-5805707 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 50, 73 |
| Conread position: | 313-499 |
| Cow position: | chr28:7964464-7964650 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 135 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 13, 39 |
| Conread position: | 314-484 |
| Cow position: | chr28:3678582-3678405 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 314-498 |
| Cow position: | chr28:4022892-4022701 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 137 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 50, 13 |
| Conread position: | 314-498 |
| Cow position: | chr28:11866447-11866637 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 47, 22 |
| Conread position: | 314-499 |
| Cow position: | chr28:6059249-6059442 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 314-499 |
| Cow position: | chr28:10053109-10053297 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 19, 94 |
| Conread position: | 314-565 |
| Cow position: | chr28:6301305-6301044 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 51, 23 |
| Conread position: | 316-503 |
| Cow position: | chr28:21008452-21008641 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 46, 18 |
| Conread position: | 317-499 |
| Cow position: | chr28:3725991-3726181 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 45, 15 |
| Conread position: | 318-480 |
| Cow position: | chr28:16200522-16200696 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 318-490 |
| Cow position: | chr28:12974094-12973918 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 15, 35 |
| Conread position: | 318-496 |
| Cow position: | chr28:25728398-25728225 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 105, 19 |
| Conread position: | 318-497 |
| Cow position: | chr28:34830372-34830184 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 318-499 |
| Cow position: | chr28:19038800-19038991 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 10, 15 |
| Conread position: | 319-477 |
| Cow position: | chr28:11828742-11828912 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 319-490 |
| Cow position: | chr28:21845168-21844994 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 44, 88 |
| Conread position: | 319-499 |
| Cow position: | chr28:19217028-19216850 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 54, 17 |
| Conread position: | 321-490 |
| Cow position: | chr28:17740039-17739859 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 39, 13 |
| Conread position: | 321-497 |
| Cow position: | chr28:10959014-10958832 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 136 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 41, 84 |
| Conread position: | 321-499 |
| Cow position: | chr28:4881034-4881212 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 39, 79 |
| Conread position: | 321-499 |
| Cow position: | chr28:5204399-5204223 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 61, 9 |
| Conread position: | 321-503 |
| Cow position: | chr28:10978051-10977865 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 43, 11 |
| Conread position: | 322-483 |
| Cow position: | chr28:3143672-3143834 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 73, 10 |
| Conread position: | 322-484 |
| Cow position: | chr28:26960699-26960866 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 41, 88 |
| Conread position: | 322-499 |
| Cow position: | chr28:5144302-5144493 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 41, 13 |
| Conread position: | 322-499 |
| Cow position: | chr28:13448326-13448151 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 101, 8 |
| Conread position: | 323-499 |
| Cow position: | chr28:4823813-4823632 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 76, 7 |
| Conread position: | 325-483 |
| Cow position: | chr28:23410123-23410279 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 70, 39 |
| Conread position: | 325-484 |
| Cow position: | chr28:3492577-3492741 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 43, 5 |
| Conread position: | 325-501 |
| Cow position: | chr28:23793110-23793283 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 328-499 |
| Cow position: | chr28:8167158-8167326 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 100, 16 |
| Conread position: | 334-493 |
| Cow position: | chr28:22362445-22362287 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 88, 62 |
| Conread position: | 334-499 |
| Cow position: | chr28:7008779-7008950 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 26, 78 |
| Conread position: | 334-501 |
| Cow position: | chr28:4379498-4379666 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 335-493 |
| Cow position: | chr28:4016724-4016565 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 28, 68 |
| Conread position: | 338-492 |
| Cow position: | chr28:31649261-31649114 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 341-496 |
| Cow position: | chr28:25400062-25399900 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 54, 117 |
| Conread position: | 359-497 |
| Cow position: | chr28:5236042-5235911 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 106 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 360-495 |
| Cow position: | chr28:16569971-16569837 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 360-499 |
| Cow position: | chr28:5232105-5231966 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 33, 67 |
| Conread position: | 360-499 |
| Cow position: | chr28:5674039-5673903 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 70, 37 |
| Conread position: | 360-499 |
| Cow position: | chr28:20397201-20397342 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 360-499 |
| Cow position: | chr28:26743798-26743654 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 361-498 |
| Cow position: | chr28:26530701-26530837 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 65, 35 |
| Conread position: | 389-499 |
| Cow position: | chr28:8149493-8149604 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 90 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 37, 0 |
Show alignments to all cow chromosomes.