Cow genome map

Conread name: Pig4-TMW8036G22

Conread position: 1-320
Cow position: chr11:83287161-83286839 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 0

Conread position: 1-375
Cow position: chr11:24395903-24396281 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 0

Conread position: 1-377
Cow position: chr11:39806264-39806631 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 263
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 74, 110

Conread position: 1-527
Cow position: chr11:27725332-27724792 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 425

Conread position: 1-527
Cow position: chr11:63390907-63390373 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 29

Conread position: 1-527
Cow position: chr11:67296439-67295898 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 255, 132

Conread position: 1-527
Cow position: chr11:73799129-73798592 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 370

Conread position: 1-530
Cow position: chr11:35738773-35738232 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 0

Conread position: 1-531
Cow position: chr11:3495612-3496156 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 425

Conread position: 1-531
Cow position: chr11:10699177-10698633 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 425

Conread position: 1-531
Cow position: chr11:10958400-10958942 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 213

Conread position: 1-531
Cow position: chr11:12354323-12353779 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 0

Conread position: 1-531
Cow position: chr11:15835490-15836024 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 171

Conread position: 1-531
Cow position: chr11:17105120-17104589 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 379

Conread position: 1-531
Cow position: chr11:17548727-17549271 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 425

Conread position: 1-531
Cow position: chr11:19061505-19060961 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 425

Conread position: 1-531
Cow position: chr11:19099914-19099372 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 86

Conread position: 1-531
Cow position: chr11:20731653-20731109 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 0

Conread position: 1-531
Cow position: chr11:26122352-26121807 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 332

Conread position: 1-531
Cow position: chr11:30201123-30200586 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 93

Conread position: 1-531
Cow position: chr11:30928951-30929495 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 425

Conread position: 1-531
Cow position: chr11:38574913-38574372 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 27

Conread position: 1-531
Cow position: chr11:41168125-41167581 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 0

Conread position: 1-531
Cow position: chr11:41313865-41314408 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 446

Conread position: 1-531
Cow position: chr11:43511402-43510862 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 268

Conread position: 1-531
Cow position: chr11:44580661-44580121 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 179

Conread position: 1-531
Cow position: chr11:50834189-50833646 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 95

Conread position: 1-531
Cow position: chr11:56462931-56463475 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 0

Conread position: 1-531
Cow position: chr11:58139279-58139807 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 23

Conread position: 1-531
Cow position: chr11:65281588-65282123 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 36

Conread position: 1-531
Cow position: chr11:71332071-71332615 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 36

Conread position: 1-531
Cow position: chr11:84966683-84967221 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 293

Conread position: 1-533
Cow position: chr11:30190334-30190861 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 349
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 196, 112

Conread position: 1-534
Cow position: chr11:2834845-2835380 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 150

Conread position: 1-534
Cow position: chr11:18146976-18146434 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 178

Conread position: 1-535
Cow position: chr11:4205750-4206289 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 141

Conread position: 1-535
Cow position: chr11:11591553-11592097 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 156

Conread position: 1-535
Cow position: chr11:25564325-25564869 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 207

Conread position: 1-535
Cow position: chr11:48981865-48982406 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 84

Conread position: 1-535
Cow position: chr11:75553217-75552681 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 177

Conread position: 1-535
Cow position: chr11:84773740-84774282 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 17

Conread position: 1-537
Cow position: chr11:1505427-1504877 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 62

Conread position: 1-537
Cow position: chr11:58050351-58049808 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 59

Conread position: 1-539
Cow position: chr11:54728033-54728584 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 47

Conread position: 1-542
Cow position: chr11:7121394-7120839 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 0

Conread position: 1-542
Cow position: chr11:32078210-32077660 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 191

Conread position: 1-542
Cow position: chr11:85391276-85390739 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 137

Conread position: 1-544
Cow position: chr11:63653110-63652551 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 111

Conread position: 1-549
Cow position: chr11:47973282-47972721 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 0

Conread position: 1-582
Cow position: chr11:7680533-7681136 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 193

Conread position: 1-582
Cow position: chr11:11256641-11257224 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 233

Conread position: 1-747
Cow position: chr11:76566019-76566817 (view UCSC Genome Browser custom track)
Alignm length: 805
Alignm identity: 541
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 685

Conread position: 1-818
Cow position: chr11:26534409-26535255 (view UCSC Genome Browser custom track)
Alignm length: 859
Alignm identity: 560
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 65

Conread position: 1-841
Cow position: chr11:29663480-29662605 (view UCSC Genome Browser custom track)
Alignm length: 881
Alignm identity: 593
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 268

Conread position: 1-850
Cow position: chr11:3682265-3681385 (view UCSC Genome Browser custom track)
Alignm length: 892
Alignm identity: 611
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 11

Conread position: 1-866
Cow position: chr11:57754636-57753740 (view UCSC Genome Browser custom track)
Alignm length: 910
Alignm identity: 628
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 116

Conread position: 1-867
Cow position: chr11:49551439-49550541 (view UCSC Genome Browser custom track)
Alignm length: 916
Alignm identity: 633
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 49

Conread position: 3-710
Cow position: chr11:21477183-21477882 (view UCSC Genome Browser custom track)
Alignm length: 722
Alignm identity: 486
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 6

Conread position: 3-807
Cow position: chr11:2951513-2950694 (view UCSC Genome Browser custom track)
Alignm length: 837
Alignm identity: 518
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 63

Conread position: 4-329
Cow position: chr11:8242557-8242230 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 227
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 63, 40

Conread position: 4-464
Cow position: chr11:62224831-62225298 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 102

Conread position: 4-535
Cow position: chr11:17280009-17279490 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 334
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 142, 24

Conread position: 4-867
Cow position: chr11:28693394-28692499 (view UCSC Genome Browser custom track)
Alignm length: 904
Alignm identity: 614
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 17

Conread position: 5-148
Cow position: chr11:14734807-14734661 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 109
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 9, 0

Conread position: 5-478
Cow position: chr11:2568100-2567623 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 16

Conread position: 5-535
Cow position: chr11:44233010-44233538 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 13

Conread position: 5-535
Cow position: chr11:75511619-75511071 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 0

Conread position: 5-535
Cow position: chr11:83284470-83284998 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 21

Conread position: 5-537
Cow position: chr11:6343034-6343578 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 209

Conread position: 5-537
Cow position: chr11:25809170-25808631 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 228

Conread position: 5-582
Cow position: chr11:27834185-27833578 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 0

Conread position: 5-583
Cow position: chr11:49556750-49556151 (view UCSC Genome Browser custom track)
Alignm length: 610
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 16

Conread position: 8-527
Cow position: chr11:53429445-53428913 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 42

Conread position: 8-791
Cow position: chr11:49037819-49037011 (view UCSC Genome Browser custom track)
Alignm length: 825
Alignm identity: 552
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 13

Conread position: 11-539
Cow position: chr11:40486738-40487270 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 18

Conread position: 12-531
Cow position: chr11:61398032-61397508 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 12

Conread position: 15-535
Cow position: chr11:59871400-59871927 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 92

Conread position: 15-867
Cow position: chr11:39151182-39152073 (view UCSC Genome Browser custom track)
Alignm length: 900
Alignm identity: 575
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 85

Conread position: 31-535
Cow position: chr11:22934014-22933510 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 5

Conread position: 32-535
Cow position: chr11:53308295-53307786 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 339
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 71, 16

Conread position: 32-849
Cow position: chr11:75402901-75402063 (view UCSC Genome Browser custom track)
Alignm length: 851
Alignm identity: 583
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 30

Conread position: 42-531
Cow position: chr11:41261318-41260815 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 384

Conread position: 42-531
Cow position: chr11:67920722-67920229 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 258

Conread position: 45-535
Cow position: chr11:26400094-26400598 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 109

Conread position: 45-535
Cow position: chr11:73513748-73513256 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 89

Conread position: 46-355
Cow position: chr11:46687615-46687914 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 218
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 63, 88

Conread position: 47-535
Cow position: chr11:40773424-40772953 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 332
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 248, 65

Conread position: 47-582
Cow position: chr11:45652298-45651749 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 365

Conread position: 49-535
Cow position: chr11:46412266-46412752 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 224

Conread position: 52-535
Cow position: chr11:8830155-8829668 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 160

Conread position: 62-535
Cow position: chr11:44106306-44106799 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 0

Conread position: 63-531
Cow position: chr11:12177718-12178201 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 364

Conread position: 63-531
Cow position: chr11:14260327-14259848 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 227

Conread position: 63-531
Cow position: chr11:52846108-52846588 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 104

Conread position: 63-533
Cow position: chr11:21729384-21728906 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 82

Conread position: 63-535
Cow position: chr11:33733946-33733470 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 429

Conread position: 63-535
Cow position: chr11:48485443-48484957 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 157

Conread position: 64-531
Cow position: chr11:2285345-2285826 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 362

Conread position: 67-531
Cow position: chr11:24494173-24493695 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 359

Conread position: 71-531
Cow position: chr11:7719877-7719402 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 18

Conread position: 75-531
Cow position: chr11:51033930-51034389 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 205

Conread position: 77-535
Cow position: chr11:40457825-40458293 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 9

Conread position: 77-537
Cow position: chr11:58805171-58804703 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 57

Conread position: 78-531
Cow position: chr11:28631179-28631646 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 348

Conread position: 78-828
Cow position: chr11:21471281-21472067 (view UCSC Genome Browser custom track)
Alignm length: 792
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 311, 176

Conread position: 81-535
Cow position: chr11:15995133-15995611 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 118

Conread position: 81-535
Cow position: chr11:76767067-76767533 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 240

Conread position: 89-530
Cow position: chr11:36930865-36930422 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 204

Conread position: 90-537
Cow position: chr11:80789734-80789271 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 49

Conread position: 93-531
Cow position: chr11:22618285-22617833 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 333

Conread position: 93-574
Cow position: chr11:18889999-18890478 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 43

Conread position: 98-531
Cow position: chr11:32876277-32875830 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 328

Conread position: 99-535
Cow position: chr11:49936071-49935631 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 299, 184

Conread position: 102-535
Cow position: chr11:38793259-38793694 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 67

Conread position: 105-535
Cow position: chr11:1667302-1667738 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 187

Conread position: 108-531
Cow position: chr11:5273896-5273461 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 28

Conread position: 114-463
Cow position: chr11:26561619-26561279 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 247
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 33, 23

Conread position: 114-527
Cow position: chr11:62791579-62792004 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 0

Conread position: 114-531
Cow position: chr11:17853778-17854207 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 310

Conread position: 114-867
Cow position: chr11:3795923-3796688 (view UCSC Genome Browser custom track)
Alignm length: 784
Alignm identity: 545
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 98

Conread position: 115-534
Cow position: chr11:10365704-10365285 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 180

Conread position: 119-535
Cow position: chr11:25335829-25336256 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 304

Conread position: 120-537
Cow position: chr11:41106698-41106275 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 209

Conread position: 121-531
Cow position: chr11:10872134-10871712 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 0

Conread position: 122-789
Cow position: chr11:34608629-34609311 (view UCSC Genome Browser custom track)
Alignm length: 694
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 276

Conread position: 126-531
Cow position: chr11:26593082-26592664 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 299

Conread position: 127-531
Cow position: chr11:59444849-59444433 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 297

Conread position: 129-531
Cow position: chr11:15495089-15495501 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 55

Conread position: 133-583
Cow position: chr11:30056915-30057374 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 63

Conread position: 134-535
Cow position: chr11:27284142-27284552 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 6

Conread position: 144-535
Cow position: chr11:67348388-67348000 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 262
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 153, 36

Conread position: 146-531
Cow position: chr11:17998215-17997821 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 70

Conread position: 147-555
Cow position: chr11:48427865-48428278 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 155

Conread position: 148-537
Cow position: chr11:34297220-34297602 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 274
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 241, 44

Conread position: 166-507
Cow position: chr11:52854438-52854758 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 229
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 297, 85

Conread position: 166-531
Cow position: chr11:38599978-38599601 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 258

Conread position: 167-671
Cow position: chr11:12077664-12077137 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 108

Conread position: 172-530
Cow position: chr11:9154154-9153790 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 149

Conread position: 172-531
Cow position: chr11:30776705-30777076 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 252

Conread position: 173-532
Cow position: chr11:25759496-25759857 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 219

Conread position: 173-533
Cow position: chr11:59623854-59623478 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 245
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 22, 64

Conread position: 173-738
Cow position: chr11:35242127-35241531 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 0

Conread position: 176-535
Cow position: chr11:8551554-8551922 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 252
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 121, 247

Conread position: 182-531
Cow position: chr11:24334241-24333880 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 242

Conread position: 191-535
Cow position: chr11:77746446-77746089 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 253
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 85, 77

Conread position: 193-531
Cow position: chr11:3238065-3238415 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 7

Conread position: 194-531
Cow position: chr11:20285854-20285505 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 230

Conread position: 195-531
Cow position: chr11:83000795-83001142 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 7

Conread position: 212-531
Cow position: chr11:74990402-74990733 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 212

Conread position: 217-537
Cow position: chr11:9870288-9870619 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 244
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 51, 127

Conread position: 219-535
Cow position: chr11:51289358-51289674 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 219
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 78, 40

Conread position: 226-531
Cow position: chr11:21619938-21620254 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 15

Conread position: 226-531
Cow position: chr11:54302333-54302650 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 198

Conread position: 226-534
Cow position: chr11:59369237-59368919 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 215
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 75, 38

Conread position: 226-542
Cow position: chr11:80591156-80591480 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 236
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 67, 174

Conread position: 235-540
Cow position: chr11:58211581-58211275 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 219
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 62, 159

Conread position: 241-470
Cow position: chr11:9972050-9971828 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 176
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 61, 38

Conread position: 242-535
Cow position: chr11:63507320-63507627 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 214
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 61, 136

Conread position: 244-535
Cow position: chr11:12009896-12010187 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 208
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 148, 15

Conread position: 247-531
Cow position: chr11:7229177-7229473 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 205
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 54, 0

Conread position: 251-535
Cow position: chr11:87155177-87154893 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 198
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 143, 25

Conread position: 252-531
Cow position: chr11:23883169-23883460 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 201
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 49, 0

Conread position: 253-531
Cow position: chr11:59583253-59583543 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 211
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 44, 171

Conread position: 253-531
Cow position: chr11:75711430-75711140 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 210
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 46, 171

Conread position: 255-531
Cow position: chr11:62009977-62009688 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 212
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 42, 170

Conread position: 255-531
Cow position: chr11:67744213-67744495 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 204
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 42, 23

Conread position: 259-531
Cow position: chr11:38505402-38505118 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 199
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 40, 165

Conread position: 260-531
Cow position: chr11:8366390-8366673 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 202
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 37, 156

Conread position: 262-582
Cow position: chr11:18147795-18147467 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 229
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 35, 97

Conread position: 265-530
Cow position: chr11:15988123-15988400 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 203
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 32, 159

Conread position: 268-747
Cow position: chr11:48169784-48169288 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 336
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 29, 44

Conread position: 278-535
Cow position: chr11:31836038-31836301 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 189
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 19, 67

Conread position: 280-540
Cow position: chr11:31834410-31834139 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 190
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 110, 0

Conread position: 285-535
Cow position: chr11:8844032-8844296 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 179
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 12, 141

Conread position: 286-531
Cow position: chr11:15047315-15047572 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 183
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 11, 138

Conread position: 286-531
Cow position: chr11:70030277-70030532 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 178
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 15, 241

Conread position: 286-535
Cow position: chr11:56652383-56652125 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 179
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 11, 0

Conread position: 292-578
Cow position: chr11:5222647-5222347 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 213
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 97, 76

Conread position: 295-595
Cow position: chr11:8242240-8241917 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 223
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 40, 0

Conread position: 297-535
Cow position: chr11:26482440-26482687 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 186
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 93, 68

Conread position: 300-456
Cow position: chr11:42849075-42848912 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 126
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 20, 72

Conread position: 300-531
Cow position: chr11:7151871-7152113 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 168
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 89, 123

Conread position: 302-535
Cow position: chr11:21853378-21853134 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 175
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 88, 0

Conread position: 303-537
Cow position: chr11:69403347-69403104 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 172
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 89, 126

Conread position: 305-867
Cow position: chr11:49411678-49411093 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 108

Conread position: 306-531
Cow position: chr11:32762329-32762565 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 163
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 84, 0

Conread position: 306-867
Cow position: chr11:28381548-28382144 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 60

Conread position: 312-561
Cow position: chr11:56227812-56228072 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 175
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 86, 0

Conread position: 314-821
Cow position: chr11:16119057-16118534 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 337

Conread position: 326-535
Cow position: chr11:3230221-3230437 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 148
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 66, 0

Conread position: 337-765
Cow position: chr11:30194393-30194845 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 310
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 54, 332

Conread position: 342-537
Cow position: chr11:67746326-67746531 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 143
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 56, 0

Conread position: 430-867
Cow position: chr11:32977993-32977541 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 168

Conread position: 537-867
Cow position: chr11:69565447-69565776 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 239
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 48, 76

Show alignments to all cow chromosomes.