Cow genome map

Conread name: Pig4-TMW8036G22

Conread position: 1-232
Cow position: chr12:36213109-36213342 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 158
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 108, 0

Conread position: 1-250
Cow position: chr12:1500001-1500248 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 176
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 167, 55

Conread position: 1-336
Cow position: chr12:8641631-8641969 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 0

Conread position: 1-389
Cow position: chr12:13259272-13259660 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 194

Conread position: 1-485
Cow position: chr12:42232162-42232660 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 0

Conread position: 1-527
Cow position: chr12:20459866-20459330 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 284

Conread position: 1-531
Cow position: chr12:62355-61811 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 425

Conread position: 1-531
Cow position: chr12:10358551-10359092 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 23

Conread position: 1-531
Cow position: chr12:11101101-11101644 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 261

Conread position: 1-531
Cow position: chr12:12929051-12928514 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 40

Conread position: 1-531
Cow position: chr12:14568962-14568428 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 465

Conread position: 1-531
Cow position: chr12:18585529-18586069 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 49

Conread position: 1-531
Cow position: chr12:20994906-20994370 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 300, 96

Conread position: 1-531
Cow position: chr12:22748067-22748612 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 36

Conread position: 1-531
Cow position: chr12:25148765-25148222 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 347

Conread position: 1-531
Cow position: chr12:25266480-25265937 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 242

Conread position: 1-531
Cow position: chr12:27506796-27506253 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 209

Conread position: 1-531
Cow position: chr12:27993953-27994497 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 179

Conread position: 1-531
Cow position: chr12:31027964-31027424 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 23

Conread position: 1-531
Cow position: chr12:32757549-32758093 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 425

Conread position: 1-531
Cow position: chr12:35548274-35547732 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 302

Conread position: 1-531
Cow position: chr12:38893215-38893760 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 426

Conread position: 1-531
Cow position: chr12:39930021-39930561 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 425

Conread position: 1-531
Cow position: chr12:41338377-41337836 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 133

Conread position: 1-531
Cow position: chr12:42605323-42604787 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 36

Conread position: 1-533
Cow position: chr12:1511911-1511366 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 425

Conread position: 1-535
Cow position: chr12:19155996-19155462 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 75

Conread position: 1-536
Cow position: chr12:37561861-37562405 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 275

Conread position: 1-537
Cow position: chr12:17662827-17663351 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 91

Conread position: 1-537
Cow position: chr12:21664989-21665538 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 88

Conread position: 1-542
Cow position: chr12:27958673-27958119 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 425

Conread position: 1-555
Cow position: chr12:758274-758825 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 26

Conread position: 1-701
Cow position: chr12:6106494-6105770 (view UCSC Genome Browser custom track)
Alignm length: 730
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 69

Conread position: 1-867
Cow position: chr12:25097411-25096533 (view UCSC Genome Browser custom track)
Alignm length: 887
Alignm identity: 575
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 216

Conread position: 1-867
Cow position: chr12:35367258-35368145 (view UCSC Genome Browser custom track)
Alignm length: 898
Alignm identity: 607
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 316

Conread position: 2-545
Cow position: chr12:21074692-21075238 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 15

Conread position: 4-827
Cow position: chr12:30501496-30502344 (view UCSC Genome Browser custom track)
Alignm length: 861
Alignm identity: 596
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 461

Conread position: 8-550
Cow position: chr12:21314570-21314016 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 417

Conread position: 9-532
Cow position: chr12:30686601-30687139 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 0

Conread position: 9-542
Cow position: chr12:10930937-10931492 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 262

Conread position: 9-577
Cow position: chr12:32284761-32285328 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 170

Conread position: 17-531
Cow position: chr12:3717405-3716877 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 0

Conread position: 23-537
Cow position: chr12:8137106-8136586 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 66

Conread position: 31-555
Cow position: chr12:19871098-19871634 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 5

Conread position: 35-542
Cow position: chr12:32219984-32220508 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 41

Conread position: 42-531
Cow position: chr12:5106951-5107454 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 384

Conread position: 42-535
Cow position: chr12:42558159-42557670 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 244, 95

Conread position: 47-531
Cow position: chr12:1006914-1007413 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 380

Conread position: 52-582
Cow position: chr12:10165049-10164504 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 44

Conread position: 56-535
Cow position: chr12:32848479-32848959 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 106

Conread position: 63-531
Cow position: chr12:21251397-21250918 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 104

Conread position: 63-535
Cow position: chr12:5712877-5713367 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 75-531
Cow position: chr12:8839181-8839650 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 350

Conread position: 81-537
Cow position: chr12:8842119-8841656 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 88

Conread position: 89-533
Cow position: chr12:8773606-8774062 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 103

Conread position: 99-535
Cow position: chr12:15230978-15231431 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 32

Conread position: 102-534
Cow position: chr12:9988732-9988288 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 0

Conread position: 119-535
Cow position: chr12:32105611-32106042 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 273
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 181, 404

Conread position: 129-555
Cow position: chr12:28737507-28737942 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 213

Conread position: 133-531
Cow position: chr12:33925711-33925301 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 291

Conread position: 133-531
Cow position: chr12:36288026-36287619 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 288

Conread position: 133-867
Cow position: chr12:25313727-25312950 (view UCSC Genome Browser custom track)
Alignm length: 783
Alignm identity: 556
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 109

Conread position: 134-867
Cow position: chr12:5540197-5539462 (view UCSC Genome Browser custom track)
Alignm length: 764
Alignm identity: 539
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 129

Conread position: 141-535
Cow position: chr12:21561743-21562135 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 262
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 135, 66

Conread position: 145-531
Cow position: chr12:16302340-16301942 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 279

Conread position: 145-535
Cow position: chr12:43681003-43681405 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 0

Conread position: 151-535
Cow position: chr12:24557584-24557976 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 217

Conread position: 154-531
Cow position: chr12:5111051-5110668 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 9

Conread position: 159-531
Cow position: chr12:32147615-32147233 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 116

Conread position: 161-531
Cow position: chr12:28013219-28012835 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 265

Conread position: 172-531
Cow position: chr12:258755-259126 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 0

Conread position: 172-531
Cow position: chr12:31829424-31829053 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 252

Conread position: 172-531
Cow position: chr12:32340231-32339860 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 252

Conread position: 172-531
Cow position: chr12:46112092-46111721 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 252

Conread position: 177-531
Cow position: chr12:7673932-7674298 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 247

Conread position: 179-583
Cow position: chr12:21497856-21497446 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 282
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 16, 45

Conread position: 193-531
Cow position: chr12:21888996-21888646 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 0

Conread position: 206-531
Cow position: chr12:22517792-22517458 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 107

Conread position: 221-535
Cow position: chr12:42794998-42795315 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 70

Conread position: 232-531
Cow position: chr12:21452892-21452581 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 192

Conread position: 236-867
Cow position: chr12:23378221-23378883 (view UCSC Genome Browser custom track)
Alignm length: 664
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 146

Conread position: 240-540
Cow position: chr12:36569250-36568940 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 200
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 60, 13

Conread position: 242-531
Cow position: chr12:24029384-24029086 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 206
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 59, 0

Conread position: 244-531
Cow position: chr12:36213376-36213674 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 215
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 54, 70

Conread position: 260-531
Cow position: chr12:22979778-22979497 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 205
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 37, 162

Conread position: 260-537
Cow position: chr12:29427855-29427574 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 191
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 107, 41

Conread position: 260-680
Cow position: chr12:15760154-15760602 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 23

Conread position: 278-535
Cow position: chr12:23294366-23294634 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 191
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 19, 165

Conread position: 293-531
Cow position: chr12:13043094-13042845 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 174
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 97, 0

Conread position: 296-531
Cow position: chr12:2228721-2228967 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 175
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 94, 127

Conread position: 296-683
Cow position: chr12:7961591-7961207 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 263
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 104, 35

Conread position: 299-531
Cow position: chr12:24447715-24447477 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 164
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 81, 71

Conread position: 306-534
Cow position: chr12:21658987-21659230 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 176
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 84, 61

Conread position: 306-867
Cow position: chr12:22450540-22451128 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 382
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 52, 93

Conread position: 308-537
Cow position: chr12:26870094-26869854 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 170
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 82, 184

Conread position: 353-535
Cow position: chr12:25365810-25365622 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 140
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 23, 12

Conread position: 419-841
Cow position: chr12:45540674-45541103 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 301
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 37, 183

Show alignments to all cow chromosomes.