Cow genome map

Conread name: Pig4-TMW8036G22

Conread position: 1-527
Cow position: chr17:452584-453116 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 127

Conread position: 1-530
Cow position: chr17:21770410-21770953 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 425

Conread position: 1-531
Cow position: chr17:183877-184421 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 0

Conread position: 1-531
Cow position: chr17:1969881-1970425 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 425

Conread position: 1-531
Cow position: chr17:2245325-2244798 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 16

Conread position: 1-531
Cow position: chr17:2264924-2265462 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 36

Conread position: 1-531
Cow position: chr17:6262587-6263128 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 153

Conread position: 1-531
Cow position: chr17:8222425-8222979 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 0

Conread position: 1-531
Cow position: chr17:14871408-14871957 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 268, 45

Conread position: 1-531
Cow position: chr17:15117547-15118091 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 425

Conread position: 1-531
Cow position: chr17:15438534-15439065 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 393, 106

Conread position: 1-531
Cow position: chr17:15709263-15708719 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 425

Conread position: 1-531
Cow position: chr17:15808720-15809261 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 23

Conread position: 1-531
Cow position: chr17:20390504-20391048 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 425

Conread position: 1-531
Cow position: chr17:20545868-20546411 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 84

Conread position: 1-531
Cow position: chr17:22249520-22248978 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 35

Conread position: 1-531
Cow position: chr17:23321692-23321146 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 362

Conread position: 1-531
Cow position: chr17:24784926-24785464 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 301, 107

Conread position: 1-531
Cow position: chr17:25739034-25739570 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 248

Conread position: 1-531
Cow position: chr17:27792043-27791514 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 193

Conread position: 1-531
Cow position: chr17:29825231-29824686 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 424

Conread position: 1-534
Cow position: chr17:4210659-4211206 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 135

Conread position: 1-535
Cow position: chr17:1312032-1311485 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 0

Conread position: 1-535
Cow position: chr17:1655028-1654485 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 296, 20

Conread position: 1-535
Cow position: chr17:16870530-16870019 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 91

Conread position: 1-535
Cow position: chr17:29156113-29156651 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 134

Conread position: 1-537
Cow position: chr17:4063071-4063618 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 366

Conread position: 1-537
Cow position: chr17:16118716-16118185 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 296, 65

Conread position: 1-540
Cow position: chr17:1457651-1457097 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 160

Conread position: 1-583
Cow position: chr17:4084801-4085403 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 23

Conread position: 1-865
Cow position: chr17:8204666-8205574 (view UCSC Genome Browser custom track)
Alignm length: 917
Alignm identity: 621
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 194

Conread position: 1-867
Cow position: chr17:2078388-2079280 (view UCSC Genome Browser custom track)
Alignm length: 913
Alignm identity: 632
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 8

Conread position: 3-209
Cow position: chr17:17087862-17087656 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 147
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 108, 124

Conread position: 4-534
Cow position: chr17:2176716-2177256 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 205

Conread position: 4-535
Cow position: chr17:12133269-12132732 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 77

Conread position: 5-295
Cow position: chr17:36816400-36816685 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 69

Conread position: 5-348
Cow position: chr17:31092990-31092656 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 216
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 109, 75

Conread position: 5-535
Cow position: chr17:241024-241573 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 130

Conread position: 5-535
Cow position: chr17:5043854-5043314 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 165

Conread position: 5-561
Cow position: chr17:33791842-33792376 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 365
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 111, 13

Conread position: 5-828
Cow position: chr17:145438-144617 (view UCSC Genome Browser custom track)
Alignm length: 858
Alignm identity: 561
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 94

Conread position: 5-867
Cow position: chr17:23722355-23723245 (view UCSC Genome Browser custom track)
Alignm length: 914
Alignm identity: 610
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 76

Conread position: 8-531
Cow position: chr17:29949955-29950486 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 68

Conread position: 8-533
Cow position: chr17:22774704-22774187 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 60

Conread position: 8-535
Cow position: chr17:20214839-20215361 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 77

Conread position: 9-382
Cow position: chr17:4161715-4161352 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 243
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 96, 89

Conread position: 9-527
Cow position: chr17:19215656-19215141 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 271

Conread position: 9-531
Cow position: chr17:15853468-15854009 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 0

Conread position: 10-531
Cow position: chr17:18100336-18099800 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 157

Conread position: 13-535
Cow position: chr17:6081252-6081767 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 148

Conread position: 17-535
Cow position: chr17:10270601-10270081 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 117

Conread position: 30-534
Cow position: chr17:158045-158563 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 9

Conread position: 47-535
Cow position: chr17:22562922-22563422 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 114

Conread position: 63-747
Cow position: chr17:2838825-2839534 (view UCSC Genome Browser custom track)
Alignm length: 721
Alignm identity: 498
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 262

Conread position: 88-534
Cow position: chr17:31425585-31426031 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 309
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 28, 19

Conread position: 88-535
Cow position: chr17:44865490-44865036 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 137

Conread position: 89-478
Cow position: chr17:11024717-11025125 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 85

Conread position: 90-537
Cow position: chr17:11084305-11083855 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 71

Conread position: 95-527
Cow position: chr17:29212456-29212902 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 236

Conread position: 95-531
Cow position: chr17:34236425-34235977 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 329

Conread position: 99-867
Cow position: chr17:20210055-20209229 (view UCSC Genome Browser custom track)
Alignm length: 832
Alignm identity: 555
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 106

Conread position: 103-531
Cow position: chr17:6611858-6612296 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 60

Conread position: 112-535
Cow position: chr17:17221160-17221591 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 278, 189

Conread position: 153-531
Cow position: chr17:5806603-5806215 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 10

Conread position: 159-535
Cow position: chr17:16447588-16447204 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 212

Conread position: 159-535
Cow position: chr17:21304185-21304567 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 266
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 222, 18

Conread position: 162-535
Cow position: chr17:23338158-23337774 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 269
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 32, 28

Conread position: 166-537
Cow position: chr17:18198251-18198634 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 30

Conread position: 171-865
Cow position: chr17:8068326-8067625 (view UCSC Genome Browser custom track)
Alignm length: 720
Alignm identity: 508
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 21

Conread position: 172-527
Cow position: chr17:17957507-17957867 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 119

Conread position: 173-865
Cow position: chr17:13689269-13688561 (view UCSC Genome Browser custom track)
Alignm length: 722
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 129

Conread position: 199-535
Cow position: chr17:11032081-11032427 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 240
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 98, 224

Conread position: 199-582
Cow position: chr17:13921176-13921553 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 242
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 185, 78

Conread position: 206-531
Cow position: chr17:8211998-8212330 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 216

Conread position: 206-533
Cow position: chr17:36790008-36790342 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 228
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 96, 46

Conread position: 206-867
Cow position: chr17:2698490-2699172 (view UCSC Genome Browser custom track)
Alignm length: 693
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 321

Conread position: 211-531
Cow position: chr17:16903527-16903853 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 125

Conread position: 226-504
Cow position: chr17:14232747-14232457 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 202
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 77, 0

Conread position: 229-535
Cow position: chr17:20078707-20078397 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 225
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 68, 184

Conread position: 233-531
Cow position: chr17:6955612-6955913 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 216
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 64, 53

Conread position: 244-531
Cow position: chr17:1672275-1672572 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 212
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 53, 69

Conread position: 257-534
Cow position: chr17:16896877-16896584 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 199
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 40, 0

Conread position: 267-535
Cow position: chr17:32407684-32407406 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 195
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 126, 53

Conread position: 268-527
Cow position: chr17:4570211-4570482 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 195
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 8, 200

Conread position: 268-537
Cow position: chr17:8351497-8351774 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 185
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 29, 238

Conread position: 280-531
Cow position: chr17:21666015-21666273 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 174
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 21, 0

Conread position: 285-582
Cow position: chr17:36816903-36817205 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 94

Conread position: 285-859
Cow position: chr17:40282030-40282634 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 167

Conread position: 286-531
Cow position: chr17:39824173-39823920 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 179
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 9, 24

Conread position: 286-676
Cow position: chr17:20135773-20135376 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 259
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 108, 19

Conread position: 296-867
Cow position: chr17:29897671-29898221 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 373
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 44, 101

Conread position: 297-552
Cow position: chr17:7054228-7053970 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 182
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 96, 70

Conread position: 307-531
Cow position: chr17:38991792-38992026 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 168
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 83, 115

Conread position: 312-533
Cow position: chr17:3780699-3780926 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 157
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 18, 156

Conread position: 318-535
Cow position: chr17:3237457-3237689 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 170
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 12, 0

Conread position: 326-558
Cow position: chr17:11913691-11913448 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 162
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 72, 0

Conread position: 529-837
Cow position: chr17:31427028-31427337 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 222
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 10, 221

Conread position: 529-867
Cow position: chr17:158579-158918 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 8

Conread position: 537-867
Cow position: chr17:5748547-5748215 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 244
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 57, 98

Show alignments to all cow chromosomes.