Cow genome map

Conread name: Pig4-TMW8036G22

Conread position: 1-186
Cow position: chr18:38090403-38090219 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 132
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 85, 0

Conread position: 1-368
Cow position: chr18:48529067-48529440 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 0

Conread position: 1-387
Cow position: chr18:54167695-54167314 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 135

Conread position: 1-450
Cow position: chr18:3362025-3362473 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 300
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 115, 208

Conread position: 1-485
Cow position: chr18:19310122-19310603 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 16

Conread position: 1-527
Cow position: chr18:37583505-37582965 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 426

Conread position: 1-531
Cow position: chr18:603511-602967 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 425

Conread position: 1-531
Cow position: chr18:11869440-11869984 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 425

Conread position: 1-531
Cow position: chr18:14128322-14127789 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 55

Conread position: 1-531
Cow position: chr18:14418931-14419474 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 217

Conread position: 1-531
Cow position: chr18:16173659-16173116 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 172

Conread position: 1-531
Cow position: chr18:19355468-19356010 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 268

Conread position: 1-531
Cow position: chr18:23801977-23802520 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 181

Conread position: 1-531
Cow position: chr18:24037890-24037349 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 191

Conread position: 1-531
Cow position: chr18:27989710-27990254 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 0

Conread position: 1-531
Cow position: chr18:29071376-29071918 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 35

Conread position: 1-531
Cow position: chr18:29863651-29863107 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 0

Conread position: 1-531
Cow position: chr18:32164978-32164434 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 425

Conread position: 1-531
Cow position: chr18:38158588-38158045 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 159

Conread position: 1-531
Cow position: chr18:47744705-47745250 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 426

Conread position: 1-531
Cow position: chr18:51484544-51485084 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 278

Conread position: 1-531
Cow position: chr18:51602712-51602168 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 36

Conread position: 1-532
Cow position: chr18:2297148-2296605 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 129

Conread position: 1-534
Cow position: chr18:35056979-35057525 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 150

Conread position: 1-535
Cow position: chr18:17323349-17323876 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 41

Conread position: 1-535
Cow position: chr18:24619382-24619924 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 425

Conread position: 1-535
Cow position: chr18:36648356-36648895 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 412

Conread position: 1-535
Cow position: chr18:37491756-37492293 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 84

Conread position: 1-542
Cow position: chr18:28969332-28968782 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 188

Conread position: 1-561
Cow position: chr18:6104451-6103877 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 27

Conread position: 1-561
Cow position: chr18:12201553-12201000 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 374
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 23, 11

Conread position: 1-583
Cow position: chr18:28083996-28084610 (view UCSC Genome Browser custom track)
Alignm length: 620
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 20

Conread position: 1-866
Cow position: chr18:27539386-27540289 (view UCSC Genome Browser custom track)
Alignm length: 907
Alignm identity: 606
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 213

Conread position: 4-531
Cow position: chr18:36776232-36776773 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 360

Conread position: 4-531
Cow position: chr18:50093487-50092947 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 0

Conread position: 5-531
Cow position: chr18:52574073-52574598 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 253

Conread position: 5-866
Cow position: chr18:33271597-33272472 (view UCSC Genome Browser custom track)
Alignm length: 893
Alignm identity: 615
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 47

Conread position: 8-531
Cow position: chr18:6734002-6733468 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 286

Conread position: 8-531
Cow position: chr18:37732650-37733186 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 417

Conread position: 8-531
Cow position: chr18:51697606-51698137 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 362

Conread position: 9-531
Cow position: chr18:40483957-40484496 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 214

Conread position: 16-535
Cow position: chr18:17335761-17335240 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 281, 95

Conread position: 18-766
Cow position: chr18:24452784-24453548 (view UCSC Genome Browser custom track)
Alignm length: 787
Alignm identity: 542
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 35

Conread position: 23-534
Cow position: chr18:29798110-29797585 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 28

Conread position: 25-533
Cow position: chr18:35293099-35293614 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 64

Conread position: 36-293
Cow position: chr18:4953722-4953983 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 182
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 73, 0

Conread position: 42-531
Cow position: chr18:55554245-55554748 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 384

Conread position: 48-535
Cow position: chr18:17670958-17670470 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 134

Conread position: 63-531
Cow position: chr18:36511649-36512131 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 0

Conread position: 63-867
Cow position: chr18:29044689-29043866 (view UCSC Genome Browser custom track)
Alignm length: 835
Alignm identity: 552
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 45

Conread position: 68-527
Cow position: chr18:40195136-40195605 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 7

Conread position: 89-527
Cow position: chr18:23701756-23701310 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 90

Conread position: 95-535
Cow position: chr18:1145495-1145050 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 220

Conread position: 102-678
Cow position: chr18:15486124-15485531 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 89

Conread position: 102-866
Cow position: chr18:30232484-30231703 (view UCSC Genome Browser custom track)
Alignm length: 803
Alignm identity: 567
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 72

Conread position: 110-531
Cow position: chr18:23688236-23688669 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 49

Conread position: 134-474
Cow position: chr18:32859934-32859583 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 0

Conread position: 143-531
Cow position: chr18:16463549-16463149 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 0

Conread position: 147-531
Cow position: chr18:18215913-18215516 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 22

Conread position: 147-531
Cow position: chr18:51653701-51654092 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 194

Conread position: 153-531
Cow position: chr18:54046978-54047376 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 279

Conread position: 153-535
Cow position: chr18:42080917-42080523 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 210

Conread position: 159-535
Cow position: chr18:33522340-33522719 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 264

Conread position: 161-531
Cow position: chr18:30606811-30607193 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 263

Conread position: 162-535
Cow position: chr18:23659779-23659394 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 284

Conread position: 168-867
Cow position: chr18:4889644-4890360 (view UCSC Genome Browser custom track)
Alignm length: 737
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 237, 49

Conread position: 171-867
Cow position: chr18:40693362-40694092 (view UCSC Genome Browser custom track)
Alignm length: 736
Alignm identity: 536
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 276

Conread position: 181-535
Cow position: chr18:16226370-16226723 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 239, 114

Conread position: 193-531
Cow position: chr18:10291878-10292228 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 231

Conread position: 204-531
Cow position: chr18:16094043-16094382 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 0

Conread position: 216-527
Cow position: chr18:43430177-43430498 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 107

Conread position: 217-867
Cow position: chr18:25972890-25972210 (view UCSC Genome Browser custom track)
Alignm length: 689
Alignm identity: 467
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 155

Conread position: 235-535
Cow position: chr18:44261257-44261566 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 211
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 13, 255

Conread position: 244-696
Cow position: chr18:969973-970451 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 199

Conread position: 245-537
Cow position: chr18:12269354-12269656 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 206
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 61, 76

Conread position: 252-741
Cow position: chr18:53872099-53872614 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 119

Conread position: 260-531
Cow position: chr18:3189978-3190241 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 184
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 145, 41

Conread position: 260-535
Cow position: chr18:43464559-43464271 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 203
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 37, 0

Conread position: 261-537
Cow position: chr18:21797307-21797596 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 197
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 26, 13

Conread position: 265-527
Cow position: chr18:43472817-43473090 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 197
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 32, 159

Conread position: 266-531
Cow position: chr18:10221464-10221187 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 201
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 31, 158

Conread position: 268-535
Cow position: chr18:43060361-43060101 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 193
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 27, 38

Conread position: 268-866
Cow position: chr18:32280197-32280812 (view UCSC Genome Browser custom track)
Alignm length: 626
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 33

Conread position: 270-531
Cow position: chr18:29078961-29079234 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 190
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 27, 154

Conread position: 275-531
Cow position: chr18:51690026-51690294 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 193
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 22, 149

Conread position: 280-534
Cow position: chr18:36908608-36908360 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 187
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 17, 64

Conread position: 280-583
Cow position: chr18:36913137-36912843 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 212
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 17, 64

Conread position: 286-531
Cow position: chr18:41837850-41837593 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 182
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 15, 0

Conread position: 288-527
Cow position: chr18:17943755-17944005 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 173
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 102, 0

Conread position: 296-531
Cow position: chr18:19461531-19461777 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 171
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 94, 127

Conread position: 296-531
Cow position: chr18:30844661-30844409 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 183
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 19, 135

Conread position: 296-534
Cow position: chr18:34053037-34052796 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 175
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 100, 72

Conread position: 327-535
Cow position: chr18:30035447-30035228 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 150
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 63, 0

Conread position: 398-866
Cow position: chr18:39494150-39494636 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 39

Conread position: 529-739
Cow position: chr18:23344589-23344387 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 152
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 8, 0

Show alignments to all cow chromosomes.