Cow genome map

Conread name: Pig4-TMW8036G22

Conread position: 1-373
Cow position: chr20:37169304-37168931 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 254

Conread position: 1-450
Cow position: chr20:14741108-14741567 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 417

Conread position: 1-455
Cow position: chr20:33181561-33181112 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 93

Conread position: 1-525
Cow position: chr20:28444426-28443889 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 0

Conread position: 1-527
Cow position: chr20:30385324-30384783 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 0

Conread position: 1-530
Cow position: chr20:10494124-10494657 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 17

Conread position: 1-531
Cow position: chr20:753360-753907 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 428

Conread position: 1-531
Cow position: chr20:825702-826246 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 425

Conread position: 1-531
Cow position: chr20:3808847-3808307 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 296, 113

Conread position: 1-531
Cow position: chr20:5086415-5085871 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 425

Conread position: 1-531
Cow position: chr20:6136067-6135525 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 36

Conread position: 1-531
Cow position: chr20:12435473-12434934 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 166

Conread position: 1-531
Cow position: chr20:14925720-14925176 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 425

Conread position: 1-531
Cow position: chr20:16106370-16106914 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 37

Conread position: 1-531
Cow position: chr20:16515279-16515789 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 357
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 113, 44

Conread position: 1-531
Cow position: chr20:16559619-16559066 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 434

Conread position: 1-531
Cow position: chr20:19844701-19845241 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 36

Conread position: 1-531
Cow position: chr20:20440048-20439503 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 426

Conread position: 1-531
Cow position: chr20:23466728-23466183 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 0

Conread position: 1-531
Cow position: chr20:24568347-24567806 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 376

Conread position: 1-531
Cow position: chr20:28560962-28560428 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 248

Conread position: 1-531
Cow position: chr20:30578785-30579329 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 447

Conread position: 1-531
Cow position: chr20:30688797-30689339 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 312

Conread position: 1-531
Cow position: chr20:34642932-34643475 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 130

Conread position: 1-534
Cow position: chr20:25331225-25330697 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 20

Conread position: 1-535
Cow position: chr20:6240209-6239671 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 25

Conread position: 1-535
Cow position: chr20:24399943-24399395 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 425

Conread position: 1-535
Cow position: chr20:25987691-25988219 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 296, 20

Conread position: 1-542
Cow position: chr20:10921999-10921450 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 36

Conread position: 1-542
Cow position: chr20:35159658-35159114 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 62

Conread position: 1-547
Cow position: chr20:31846910-31846346 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 36

Conread position: 1-836
Cow position: chr20:7593531-7592681 (view UCSC Genome Browser custom track)
Alignm length: 855
Alignm identity: 564
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 377

Conread position: 1-867
Cow position: chr20:21719480-21720374 (view UCSC Genome Browser custom track)
Alignm length: 901
Alignm identity: 615
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 314

Conread position: 5-448
Cow position: chr20:18489873-18490325 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 31

Conread position: 8-534
Cow position: chr20:5794703-5795243 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 207

Conread position: 9-533
Cow position: chr20:14867453-14866924 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 295

Conread position: 9-536
Cow position: chr20:10404632-10405165 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 28

Conread position: 14-531
Cow position: chr20:22048298-22048832 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 54

Conread position: 23-533
Cow position: chr20:6259349-6258831 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 319

Conread position: 24-534
Cow position: chr20:3782759-3782234 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 63

Conread position: 42-531
Cow position: chr20:34231893-34231404 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 285

Conread position: 42-867
Cow position: chr20:35093503-35094359 (view UCSC Genome Browser custom track)
Alignm length: 862
Alignm identity: 593
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 149

Conread position: 47-531
Cow position: chr20:8445381-8445878 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 296

Conread position: 47-531
Cow position: chr20:30146403-30146897 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 379

Conread position: 47-534
Cow position: chr20:9996500-9997005 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 0

Conread position: 60-535
Cow position: chr20:13654347-13653870 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 158

Conread position: 60-759
Cow position: chr20:28102415-28103127 (view UCSC Genome Browser custom track)
Alignm length: 734
Alignm identity: 467
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 126

Conread position: 63-535
Cow position: chr20:12685599-12685112 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 166

Conread position: 63-792
Cow position: chr20:38654871-38654115 (view UCSC Genome Browser custom track)
Alignm length: 768
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 230, 190

Conread position: 68-537
Cow position: chr20:14511687-14512167 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 120

Conread position: 77-583
Cow position: chr20:28887374-28887892 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 131

Conread position: 78-531
Cow position: chr20:5503748-5503281 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 348

Conread position: 90-535
Cow position: chr20:24904530-24904074 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 69

Conread position: 91-535
Cow position: chr20:13050558-13050088 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 68

Conread position: 92-531
Cow position: chr20:774671-775124 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 334

Conread position: 96-864
Cow position: chr20:10685758-10686553 (view UCSC Genome Browser custom track)
Alignm length: 811
Alignm identity: 577
Alignm E-value: 0
Alignm gaps (pig, cow): 256, 121

Conread position: 99-535
Cow position: chr20:15526765-15527215 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 99-556
Cow position: chr20:19018382-19017921 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 385

Conread position: 102-531
Cow position: chr20:6550973-6550532 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 199, 0

Conread position: 102-534
Cow position: chr20:8350072-8349638 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 284
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 56, 65

Conread position: 103-561
Cow position: chr20:28956927-28956455 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 0

Conread position: 121-531
Cow position: chr20:30479153-30479575 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 97

Conread position: 133-534
Cow position: chr20:29371362-29370952 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 62

Conread position: 137-533
Cow position: chr20:20213986-20214382 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 265
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 62, 130

Conread position: 140-533
Cow position: chr20:8890381-8890774 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 269
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 228, 113

Conread position: 140-535
Cow position: chr20:37104437-37104030 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 288
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 55, 22

Conread position: 147-544
Cow position: chr20:37154898-37154487 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 278

Conread position: 152-535
Cow position: chr20:20364667-20364275 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 201

Conread position: 158-548
Cow position: chr20:9535986-9536378 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 256, 126

Conread position: 159-535
Cow position: chr20:5269946-5269564 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 56

Conread position: 168-535
Cow position: chr20:40255747-40256132 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 34

Conread position: 173-738
Cow position: chr20:13661249-13660646 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 498

Conread position: 174-539
Cow position: chr20:22185915-22185540 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 166

Conread position: 181-535
Cow position: chr20:19156053-19155693 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 121

Conread position: 193-531
Cow position: chr20:9222968-9223318 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 231

Conread position: 193-531
Cow position: chr20:12177374-12177024 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 231

Conread position: 193-531
Cow position: chr20:13304182-13303832 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 231

Conread position: 193-531
Cow position: chr20:26053237-26052887 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 231

Conread position: 208-531
Cow position: chr20:26737908-26738243 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 216

Conread position: 225-652
Cow position: chr20:27896294-27895835 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 318
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 54, 43

Conread position: 240-527
Cow position: chr20:36375034-36374739 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 196
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 57, 0

Conread position: 253-531
Cow position: chr20:11331498-11331208 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 205
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 44, 171

Conread position: 264-535
Cow position: chr20:28113177-28113452 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 190
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 33, 59

Conread position: 281-535
Cow position: chr20:37271475-37271740 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 186
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 16, 58

Conread position: 284-531
Cow position: chr20:23802357-23802616 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 185
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 18, 0

Conread position: 285-534
Cow position: chr20:34598147-34597891 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 185
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 12, 44

Conread position: 286-531
Cow position: chr20:5958936-5958679 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 176
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 15, 0

Conread position: 286-535
Cow position: chr20:7995334-7995073 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 188
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 11, 0

Conread position: 292-583
Cow position: chr20:26999711-27000027 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 229
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 5, 76

Conread position: 294-541
Cow position: chr20:12827250-12827000 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 174
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 99, 18

Conread position: 296-535
Cow position: chr20:20935910-20935667 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 163
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 98, 56

Conread position: 306-767
Cow position: chr20:29314084-29314581 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 128

Conread position: 311-533
Cow position: chr20:14877295-14877526 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 161
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 83, 197

Conread position: 315-537
Cow position: chr20:17667980-17668217 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 163
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 75, 0

Conread position: 316-535
Cow position: chr20:26075797-26076026 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 166
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 78, 182

Conread position: 327-535
Cow position: chr20:24660345-24660559 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 151
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 62, 191

Conread position: 398-540
Cow position: chr20:12489816-12489671 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 110
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 60, 101

Conread position: 406-866
Cow position: chr20:35145141-35145602 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 9

Conread position: 491-867
Cow position: chr20:7804013-7803616 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 159

Conread position: 530-754
Cow position: chr20:21387449-21387683 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 167
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 55, 7

Show alignments to all cow chromosomes.